Index

_

__init__() (mmf.archive.ArchiveError method) (mmf.archive.DataSet method) (mmf.archive.DuplicateError method) (mmf.async.client.ISync method) (mmf.async.client.TkSync method) (mmf.async.logger.BufferingFormatter method) (mmf.async.logger.FileHandler method) (mmf.async.logger.Filter method) (mmf.async.logger.Formatter method) (mmf.async.logger.Handler method) (mmf.async.logger.LogRecord method) (mmf.async.logger.Logger method) (mmf.async.logger.LoggerAdapter method) (mmf.async.logger.MyLogger method) (mmf.async.logger.NullHandler method) (mmf.async.logger.StreamHandler method) (mmf.async.pb.IDict method) (mmf.async.pp.ManageRemoteServer method) (mmf.async.pp.ServerMMF method) (mmf.async.pp.Task method) (mmf.async.pp.decorate_logger method) (mmf.async.queueserver.QueueServer method) (mmf.async.server.IDict method) (mmf.async.twisted_utils.RIDict method) (mmf.async.twisted_utils.TwistedThread method) (mmf.async.utils.IntStringFormatter method) (mmf.async.utils.MyCondition method) (mmf.async.utils.MySet method) (mmf.async.utils.ProtocolError method) (mmf.contrib.odict.odict method) (mmf.interfaces.Attribute method) (mmf.math.earray.earray method) (mmf.math.fermi_functions method) (mmf.math.integrate.IntParam method) (mmf.math.integrate.IntegrationError method) (mmf.math.integrate.integrate_1d.quadrature.Decay method) (mmf.math.integrate.integrate_1d.quadrature.ExpDecay method) (mmf.math.integrate.integrate_1d.quadrature.IntegrationError method) (mmf.math.integrate.integrate_1d.quadrature.PowerDecay method) (mmf.math.interp.DegenerateRefinement method) (mmf.math.interp.Discontinuity method) (mmf.math.interp.EvenUnivariateSpline method) (mmf.math.interp.InterpolatedUnivariateSpline method) (mmf.math.interp.NoRefinement method) (mmf.math.interp.Options method) (mmf.math.interp.Rbf method) (mmf.math.interp.RectBivariateSpline method) (mmf.math.interp.TolMet method) (mmf.math.interp.UnivariateSpline method) (mmf.math.linalg.pardiso.Pardiso method) (mmf.math.linalg.pardiso.PardisoError method) (mmf.math.multigrid.DivergenceError method) (mmf.math.multigrid.MG method) (mmf.math.multigrid.WignerSeitz method) (mmf.math.multigrid.notes.multigrid_notes.Galerkin method) (mmf.math.multigrid.stencil.Code method) (mmf.math.multigrid.stencil.Interpolator method) (mmf.math.multigrid.stencil.Poisson1D method) (mmf.math.multigrid.stencil.Poisson2D method) (mmf.math.multigrid.stencil.Poisson3D method) (mmf.math.multigrid.stencil.PoissonBase method) (mmf.math.ode.deq.IDict method) (mmf.math.ode.deq.ODE_1_2 method) (mmf.math.ode.deq.SympyODE method) (mmf.math.ode.deq.Transform method) (mmf.math.ode.deq.log_transform method) (mmf.math.special.fermi.fermi_functions method) (mmf.math.special.fermi_functions method) (mmf.objects.Archivable method) (mmf.objects.Attr method) (mmf.objects.ClassVar method) (mmf.objects.Computed method) (mmf.objects.Container method) (mmf.objects.Delegate method) (mmf.objects.Excluded method) (mmf.objects.Fast method) (mmf.objects.InitializationError method) (mmf.objects.Internal method) (mmf.objects.MemoizedContainer method) (mmf.objects.NameClashWarning method) (mmf.objects.NameClashWarning1 method) (mmf.objects.NameClashWarning2 method) (mmf.objects.NoCopy method) (mmf.objects.Options method) (mmf.objects.RecView method) (mmf.objects.Ref method) (mmf.objects.StateVars method) (mmf.objects.attribute method) (mmf.objects.calculate method) (mmf.objects.option method) (mmf.objects.parameter method) (mmf.physics.potentials.separable.EffectiveRange method) (mmf.physics.potentials.separable.Separable method) (mmf.physics.potentials.separable.SharpCutoff method) (mmf.physics.potentials.separable.SmoothCutoff method) (mmf.physics.potentials.separable.VPoschlTeller method) (mmf.physics.potentials.separable.Yamaguchi method) (mmf.physics.potentials.two_body.BargmannPotential method) (mmf.physics.potentials.two_body.DoubleExponential method) (mmf.physics.potentials.two_body.DoubleGaussian method) (mmf.physics.potentials.two_body.PoschlTeller method) (mmf.physics.potentials.two_body.Potential method) (mmf.physics.potentials.two_body.PotentialV0R0 method) (mmf.physics.potentials.two_body.SoonYongPotential2 method) (mmf.plotting.matplotlib.figures.Figures method) (mmf.solve.broyden.DyadicSum method) (mmf.solve.broyden._JinvExtendedBroyden method) (mmf.solve.broyden_solvers.Broyden method) (mmf.solve.broyden_solvers.ExtendedBroyden method) (mmf.solve.broyden_solvers.ModifiedBroyden method) (mmf.solve.solver_interface.BareState method) (mmf.solve.solver_interface.IterationError method) (mmf.solve.solver_interface.Problem method) (mmf.solve.solver_interface.Solver method) (mmf.solve.solver_interface.SolverData method) (mmf.solve.solver_interface.State method) (mmf.solve.solver_interface.State_x method) (mmf.solve.solver_utils.IterationError method) (mmf.solve.solver_utils.NoDescentError method) (mmf.solve.solvers.Broyden method) (mmf.solve.solvers.LineSearch method) (mmf.solve.solvers.ModifiedBroyden method) (mmf.solve.solvers.SimpleIteration method) (mmf.solve.test_problems.DennisSchnabel method) (mmf.solve.test_problems.MediumScale method) (mmf.solve.test_problems.Mine method) (mmf.solve.test_problems.TwoDimensional method) (mmf.sphinx.ext.apigen.ApiDocWriter method) (mmf.sphinx.ext.matplotlibext.mathmpl.latex_math method) (mmf.sphinx.ext.matplotlibext.only_directives.html_only method) (mmf.sphinx.ext.matplotlibext.only_directives.latex_only method) (mmf.sphinx.ext.matplotlibext.only_directives.only_base method) (mmf.utils.StatusBar method) (mmf.utils.Timer method) (mmf.utils.debug.Memory method) (mmf.utils.input.Cancel method) (mmf.utils.input.Invalid method) (mmf.utils.logging.LoggerTraceback method) (mmf.utils.logging.MMFFormatter method) (mmf.utils.logging.MMFLogger method) (mmf.utils.logging.NullHandler method) (mmf.utils.mdb.MDBBreak method) (mmf.utils.mmf_plot.ListCollection method) (mmf.utils.mmf_profile.LineData method) (mmf.utils.mmf_test.TestCase method) (mmf.utils.mmf_test.TimeExpired method) (mmf.utils.mmf_theano.Elemwise method) (mmf.utils.mmf_theano.InverseUnaryScalarOp method) (mmf.utils.mmf_theano.Polynomial method) (mmf.utils.mmf_theano.ScalarOpFromExpr method) (mmf.utils.mmf_theano.UnaryScalarOp method) (mmf.utils.mmf_theano.UnaryScalarOpFromExpr method) (mmf.utils.mmf_warnings.catch_warnings method) (mmf.utils.myvectorize.vectorize method) (mmf.utils.script.AttributeError method) _b (mmf.solve.broyden._JinvExtendedBroyden attribute) _check (mmf.solve.broyden._JinvExtendedBroyden attribute) _debug (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) _f_evals (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) _interpolator (mmf.math.multigrid.MG attribute) _JinvExtendedBroyden (class in mmf.solve.broyden)

_L (mmf.math.multigrid.MG attribute) _Linv (mmf.math.multigrid.MG attribute) _packing_profile (mmf.solve.solver_interface.State attribute) (mmf.solve.solver_interface.State_x attribute) _solver_setting_x_ (mmf.solve.solver_interface.BareState attribute) (mmf.solve.solver_interface.State attribute) (mmf.solve.solver_interface.State_x attribute) _stencil (mmf.math.multigrid.MG attribute) _x_ (mmf.solve.solver_interface.State attribute) (mmf.solve.solver_interface.State_x attribute)

A

A (mmf.physics.seq.S attribute) a (mmf.physics.seq.S attribute) A() (mmf.math.multigrid.MG method) (mmf.math.multigrid.notes.multigrid_notes.Galerkin method) a_ (mmf.physics.potentials.two_body.PoschlTeller attribute) A_sphericalWS() (mmf.math.multigrid.WignerSeitz method) AB() (mmf.math.multigrid.stencil.PoissonBase class method) abs_tol (mmf.math.interp.Options attribute) (mmf.math.multigrid.MG attribute) AbsTol (mmf.math.integrate.IntParam attribute) acquire() (mmf.async.logger.Handler method) active (mmf.solve.solver_interface.IPlotProblem attribute) (mmf.solve.solver_interface.IProblem attribute) (mmf.solve.solver_interface.Problem attribute), [1] active_parameters (mmf.solve.solver_interface.Problem attribute) adaptive_angular_average() (in module mmf.math.integrate) adaptive_angular_average_no_r() (in module mmf.math.integrate) add() (mmf.async.utils.MySet method) add_callback() (mmf.async.pb.IDict method) (mmf.async.server.IDict method) add_dyad() (mmf.solve.broyden.DyadicSum method) add_point() (mmf.solve.solver_interface.IJinv method) addHandler() (mmf.async.logger.Logger method) addLevelName() (in module mmf.async.logger) ainv() (mmf.physics.potentials.separable.Separable method) air_modchol() (in module mmf.math.linalg.cholesky.se99) algorithm (mmf.math.interp.Options attribute) all_bases() (in module mmf.utils) all_items() (mmf.objects.StateVars method) almost_equal() (in module mmf.math) almost_zero() (in module mmf.math) alpha (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) angular_average() (in module mmf.math.integrate) angular_average_no_r() (in module mmf.math.integrate) animate() (in module mmf.async.tst)

annotate_files() (mmf.utils.mmf_profile.LineData method) ApiDocWriter (class in mmf.sphinx.ext.apigen) apigen_autosummary configuration value apigen_headings configuration value apigen_inherited_members configuration value apigen_label configuration value apigen_module_skip_patterns configuration value apigen_outdir configuration value apigen_package_skip_patterns configuration value apigen_packages configuration value apply_transform() (mmf.solve.broyden.DyadicSum method) Archivable (class in mmf.objects) Archive (class in mmf.archive) archive() (mmf.objects.Archivable method) archive_1() (mmf.interfaces.IArchivable method) (mmf.objects.Archivable method) (mmf.objects.StateVars method) ArchiveError (class in mmf.archive) are_ (mmf.physics.potentials.two_body.PoschlTeller attribute) argsfrom() (in module mmf.objects.attributes) asarray() (mmf.solve.broyden._JinvExtendedBroyden method) (mmf.solve.broyden.DyadicSum method) assertAlmostEqual() (mmf.utils.mmf_test.TestCase method) at (mmf.solve.broyden.DyadicSum attribute) Attr (class in mmf.objects) Attribute (class in mmf.interfaces) attribute (class in mmf.objects) AttributeError (class in mmf.utils.script) autodoc_preprocess_docstring() (in module mmf.sphinx.ext.mmfext) autodoc_process_signature() (in module mmf.sphinx.ext.mmfext) autodoc_skip_member() (in module mmf.sphinx.ext.mmfext) average() (mmf.math.multigrid.MG method) (mmf.math.multigrid.WignerSeitz method)

B

B (mmf.physics.seq.S attribute) b (mmf.solve.broyden.DyadicSum attribute) backup() (in module mmf.utils.script) bad_step_factor (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) BareState (class in mmf.solve.solver_interface) BargmannPotential (class in mmf.physics.potentials.two_body) basicConfig() (in module mmf.async.logger) bcs (mmf.math.ode.deq.SympyODE attribute) block_diag() (in module mmf.math.linalg)

boundary_conditions (mmf.math.multigrid.MG attribute) (mmf.math.multigrid.stencil.Interpolator attribute) bracket_root() (in module mmf.solve) breakout() (in module mmf.utils.mdb) Broyden (class in mmf.solve.broyden_solvers) (class in mmf.solve.solvers) BroydenData (class in mmf.solve.broyden_solvers) BufferingFormatter (class in mmf.async.logger) builder_inited() (in module mmf.sphinx.ext.matplotlibext.only_directives) byindex() (mmf.contrib.odict.odict method)

C

C_d (mmf.math.multigrid.WignerSeitz attribute) c_min (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.SimpleIteration attribute) calculate (class in mmf.objects) calculate() (mmf.objects.Calculator method) Calculator (class in mmf.objects) callback() (in module mmf.examples.pp_example) callHandlers() (mmf.async.logger.Logger method) callTwisted() (in module mmf.async.twisted_utils) can_document_member() (mmf.sphinx.ext.apigen.MonkeypatchAutodoc.MyAttributeDocumenter class method) (mmf.sphinx.ext.apigen.MonkeypatchAutodoc.MyDataDocumenter class method) (mmf.sphinx.ext.apigen.MonkeypatchAutodoc.MyMethodDocumenter class method) (mmf.sphinx.ext.apigen.MonkeypatchAutodoc.MyModuleDocumenter class method) Cancel (class in mmf.utils.input) captureWarnings() (in module mmf.async.logger) (in module mmf.utils.logging) catch_warnings (class in mmf.utils.mmf_warnings) cbrt() (in module mmf.math) ceil_root() (in module mmf.solve) change_basis() (mmf.solve.solver_interface.ISolverData method) check_access() (in module mmf.utils.script) check_hosts() (in module mmf.async.pp) check_point() (in module mmf.utils.debug) checkpoint() (mmf.utils.debug.Memory method) class_keys() (mmf.objects.StateVars class method) class_NamedArray() (in module mmf.objects) ClassVar (class in mmf.objects) clear() (mmf.contrib.odict.odict method) (mmf.solve.solver_interface.IMesg method) (mmf.utils.StatusBar class method) (mmf.utils.StatusBar.Bar method) clenshaw_curtis() (in module mmf.math.integrate.integrate_1d.clenshaw_curtis) close() (mmf.async.logger.FileHandler method) (mmf.async.logger.Handler method) (mmf.utils.StatusBar class method)

Code (class in mmf.math.multigrid.stencil), [1] colmod() (in module mmf.math.linalg.cholesky.gmw81) compare() (in module mmf.signal.spectrum) comparing_periodic() (in module mmf.math.multigrid.notes.multigrid_notes) Complex (class in mmf.utils.examples.mmf_test_example) compute() (mmf.physics.potentials.optical_traps.Model method) compute_R() (mmf.physics.potentials.two_body.Potential method) Computed (class in mmf.objects) configuration value apigen_autosummary apigen_headings apigen_inherited_members apigen_label apigen_module_skip_patterns apigen_outdir apigen_package_skip_patterns apigen_packages connect() (mmf.async.twisted_utils.RIDict method) Container (class in mmf.objects) contourf() (in module mmf.utils.mmf_plot) converged (mmf.solve.solver_interface.BareState attribute) (mmf.solve.solver_interface.IState attribute) (mmf.solve.solver_interface.State attribute) (mmf.solve.solver_interface.State_x attribute) converged() (mmf.solve.solver_interface.Solver method) converter() (mmf.async.logger.Formatter method) copy (mmf.objects.NoCopy attribute) copy() (mmf.contrib.odict.odict method) copy_from() (mmf.solve.solver_interface.BareState method) (mmf.solve.solver_interface.IState method) (mmf.solve.solver_interface.State_x method) copy_from_x_() (mmf.solve.solver_interface.BareState method) (mmf.solve.solver_interface.IState method) count() (mmf.math.multigrid.MG method) (mmf.math.multigrid.WignerSeitz method) count_objects() (in module mmf.utils.debug) createLock() (mmf.async.logger.Handler method) (mmf.async.logger.NullHandler method) critical() (in module mmf.async.logger) (mmf.async.logger.Logger method) (mmf.async.logger.LoggerAdapter method) current_state_dir (mmf.math.multigrid.MG attribute)

D

d (mmf.math.multigrid.MG attribute) (mmf.math.multigrid.WignerSeitz attribute) (mmf.math.multigrid.stencil.Poisson1D attribute) (mmf.math.multigrid.stencil.Poisson2D attribute) (mmf.math.multigrid.stencil.Poisson3D attribute) (mmf.math.multigrid.stencil.PoissonBase attribute) D() (in module mmf.math.differentiate) D1() (in module mmf.math.differentiate) D2() (in module mmf.math.differentiate) D_Hermitian() (in module mmf.math.differentiate) DataSet (class in mmf.archive) dcuhre() (in module mmf.math.integrate.multidimen) ddump() (mmf.async.logger.MyLogger method) debug (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) debug() (in module mmf.async.logger) (mmf.async.logger.Logger method) (mmf.async.logger.LoggerAdapter method) debug_level (mmf.utils.logging.MMFLogger attribute) Decay (class in mmf.math.integrate.integrate_1d.quadrature) decorate_logger (class in mmf.async.pp) default_action (mmf.objects.NameClashWarning attribute) (mmf.objects.NameClashWarning1 attribute) (mmf.objects.NameClashWarning2 attribute) define_active() (mmf.solve.solver_interface.Problem method) define_G_scale() (mmf.solve.solver_interface.Problem method) DegenerateRefinement (class in mmf.math.interp) Delegate (class in mmf.objects) delete() (mmf.solve.solver_interface.IMesg method) (mmf.utils.StatusBar.Bar method) delete_sub() (mmf.solve.solver_interface.IMesg method) Delta() (in module mmf.fit.lsq) DennisSchnabel (class in mmf.solve.test_problems) DennisSchnabel.ExtendedPowell (class in mmf.solve.test_problems) destroy() (mmf.async.pp.ServerMMF method) df (mmf.utils.mmf_theano.InverseUnaryScalarOp attribute) dh() (mmf.physics.potentials.optical_traps.Model method)

diag() (mmf.solve.broyden.DyadicSum method) differentiate() (in module mmf.math.differentiate) DIIS (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) Dimension (mmf.math.integrate.IntParam attribute) disable() (in module mmf.async.logger) Discontinuity (class in mmf.math.interp) discretized_volume() (mmf.math.multigrid.WignerSeitz method) DivergenceError (class in mmf.math.multigrid) dN_dm() (mmf.math.fermi_functions class method) (mmf.math.special.fermi.fermi_functions class method) (mmf.math.special.fermi_functions class method) dN_dmu() (mmf.math.fermi_functions class method) (mmf.math.special.fermi.fermi_functions class method) (mmf.math.special.fermi_functions class method) do() (in module mmf.utils.script) do_f() (in module mmf.utils.script) DocWrapper (class in mmf.utils.text) dont_traverse() (mmf.sphinx.ext.matplotlibext.only_directives.only_base method) DoubleExponential (class in mmf.physics.potentials.two_body) DoubleGaussian (class in mmf.physics.potentials.two_body) draw() (mmf.utils.mmf_plot.ListCollection method) dump() (mmf.async.logger.MyLogger method) DuplicateError (class in mmf.archive) dVdV() (mmf.physics.potentials.two_body.BargmannPotential method) (mmf.physics.potentials.two_body.PoschlTeller method) (mmf.physics.potentials.two_body.Potential method) (mmf.physics.potentials.two_body.SoonYongPotential2 method) dx() (mmf.math.multigrid.MG method) dx_inv() (mmf.math.multigrid.MG method) dyadic (mmf.solve.broyden_solvers.ExtendedBroyden attribute) DyadicSum (class in mmf.solve.broyden) dynamic_range (mmf.solve.broyden.DyadicSum attribute)

E

earray (class in mmf.math.earray) EffectiveRange (class in mmf.physics.potentials.separable) Elemwise (class in mmf.utils.mmf_theano) elemwise (mmf.utils.mmf_theano.UnaryScalarOp attribute) ellipse_perimeter() (in module mmf.math) ellipsoid_area() (in module mmf.math) EllipticE() (in module mmf.math) EllipticF() (in module mmf.math) emit() (mmf.async.logger.FileHandler method) (mmf.async.logger.Handler method) (mmf.async.logger.NullHandler method) (mmf.async.logger.StreamHandler method) (mmf.utils.logging.NullHandler method) eq_() (in module mmf.utils.mmf_test) eqs (mmf.math.ode.deq.SympyODE attribute) error() (in module mmf.async.logger) (mmf.async.logger.Logger method) (mmf.async.logger.LoggerAdapter method) (mmf.solve.solver_interface.IMesg method) error_line() (in module mmf.utils.mmf_plot)

eschol() (in module mmf.math.linalg.cholesky.se99) EvenUnivariateSpline (class in mmf.math.interp) exact_add() (in module mmf.math.integrate) exact_sum() (in module mmf.math.integrate) example1() (in module mmf.examples.inline_example) exception() (in module mmf.async.logger) (mmf.async.logger.Logger method) (mmf.async.logger.LoggerAdapter method) Excluded (class in mmf.objects) execute() (in module mmf.utils.script) ExpDecay (class in mmf.math.integrate.integrate_1d.quadrature) extend() (in module mmf.signal.spectrum) ExtendedBroyden (class in mmf.solve.broyden) (class in mmf.solve.broyden_solvers) ExtendedBroydenData (class in mmf.solve.broyden_solvers) extrapolate_range() (in module mmf.solve.solvers)

F

f (mmf.utils.mmf_theano.InverseUnaryScalarOp attribute) f() (in module mmf.examples.pp_example) F() (mmf.solve.solver_interface.Problem method) (mmf.solve.test_problems.TwoDimensional.Himmelblau method) f() (mmf.solve.test_problems.TwoDimensional.Himmelblau method) F() (mmf.solve.test_problems.TwoDimensional.MexicanHat method) f() (mmf.solve.test_problems.TwoDimensional.MexicanHat method) F() (mmf.solve.test_problems.TwoDimensional.SensitiveParameter method) f() (mmf.solve.test_problems.TwoDimensional.SensitiveParameter method) f1() (in module mmf.examples.init_example.mod1) f4() (in module mmf.examples.init_example.mod4.mod4a) f_x() (mmf.solve.test_problems.TwoDimensional.Himmelblau method) (mmf.solve.test_problems.TwoDimensional.MexicanHat method) (mmf.solve.test_problems.TwoDimensional.SensitiveParameter method) f_y() (mmf.solve.test_problems.TwoDimensional.Himmelblau method) (mmf.solve.test_problems.TwoDimensional.MexicanHat method) (mmf.solve.test_problems.TwoDimensional.SensitiveParameter method) Fast (class in mmf.objects) fatal() (in module mmf.async.logger) (mmf.async.logger.Logger method) fermi_functions (class in mmf.math) (class in mmf.math.special) (class in mmf.math.special.fermi) fermi_integral() (in module mmf.math) (in module mmf.math.special) (in module mmf.math.special.fermi) fft() (in module mmf.math.fft) fftfreq() (in module mmf.math.fft) fftn() (in module mmf.math.fft) fftshift() (in module mmf.math.fft) Fi() (in module mmf.math) (in module mmf.math.special) (in module mmf.math.special.lerch) Figure (class in mmf.utils.mmf_plot) Figures (class in mmf.plotting.matplotlib.figures)

FileHandler (class in mmf.async.logger) Filter (class in mmf.async.logger) filter() (mmf.async.logger.Filter method) filterwarnings() (in module mmf.utils.mmf_warnings) findCaller() (mmf.async.logger.Logger method) finished (mmf.async.pp.Task attribute) finished_tasks() (mmf.async.pp.ServerMMF method) fixedpoint() (in module mmf.solve.solver_interface) flush() (mmf.async.logger.Handler method) (mmf.async.logger.StreamHandler method) (mmf.async.pp.decorate_logger method) fn_rep (mmf.solve.solver_interface.State_x attribute) fontset_choice() (in module mmf.sphinx.ext.matplotlibext.mathmpl) force_real (mmf.solve.solver_interface.State attribute) (mmf.solve.solver_interface.State_x attribute) format() (mmf.async.logger.BufferingFormatter method) (mmf.async.logger.Formatter method) (mmf.async.logger.Handler method) (mmf.async.utils.IFormatter method) (mmf.async.utils.IntStringFormatter static method) (mmf.utils.logging.MMFFormatter method) format_data() (mmf.utils.mmf_profile.LineData method) formatException() (mmf.async.logger.Formatter method) formatFooter() (mmf.async.logger.BufferingFormatter method) formatHeader() (mmf.async.logger.BufferingFormatter method) formatStack() (mmf.utils.logging.MMFFormatter method) Formatter (class in mmf.async.logger) (mmf.async.utils.MsgQueue attribute) formatTime() (mmf.async.logger.Formatter method) formatwarning() (in module mmf.utils.mmf_warnings) fromkeys() (mmf.contrib.odict.odict class method)

G

g (mmf.physics.potentials.separable.EffectiveRange attribute) (mmf.physics.potentials.separable.Separable attribute) (mmf.physics.potentials.separable.SharpCutoff attribute) (mmf.physics.potentials.separable.SmoothCutoff attribute) (mmf.physics.potentials.separable.Yamaguchi attribute) G (mmf.solve.broyden._JinvExtendedBroyden attribute) g (mmf.solve.solver_interface.IJinv attribute) g() (in module mmf.examples.init_example) G() (mmf.solve.solver_interface.Problem method) (mmf.solve.test_problems.TwoDimensional.Himmelblau method) (mmf.solve.test_problems.TwoDimensional.MexicanHat method) (mmf.solve.test_problems.TwoDimensional.SensitiveParameter method) g0 (mmf.solve.solver_interface.IJinv attribute) G_scale (mmf.solve.solver_interface.IPlotProblem attribute) (mmf.solve.solver_interface.IProblem attribute) (mmf.solve.solver_interface.Problem attribute), [1] G_scale_parameters (mmf.solve.solver_interface.Problem attribute) G_tol (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.ISolver attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) Galerkin (class in mmf.math.multigrid.notes.multigrid_notes) gE() (mmf.physics.potentials.two_body.Potential method) generate_api() (in module mmf.sphinx.ext.apigen) get_A() (mmf.math.multigrid.MG method) get_A_sphericalWS() (mmf.math.multigrid.WignerSeitz method) get_all_objects() (in module mmf.utils.debug) get_ar() (mmf.physics.potentials.two_body.Potential method) get_args() (in module mmf.utils) (mmf.objects.StateVars class method) get_collections() (mmf.utils.mmf_plot.ListCollection method) get_conf_string() (in module mmf.sphinx) get_d_dr() (mmf.math.multigrid.WignerSeitz method) get_deq() (mmf.physics.potentials.two_body.Potential method) get_deq_ar() (mmf.physics.potentials.two_body.Potential method) get_deq_E() (mmf.physics.potentials.two_body.Potential method) get_deq_gE() (mmf.physics.potentials.two_body.Potential method) get_deq_gE_old() (mmf.physics.potentials.two_body.Potential method) get_function() (mmf.utils.mmf_theano.UnaryScalarOp method) get_g() (mmf.math.integrate.integrate_1d.quadrature.ExpDecay method) (mmf.math.integrate.integrate_1d.quadrature.PowerDecay method) get_hg_checksum() (in module mmf.utils.run) get_history() (mmf.solve.solver_interface.BareState method) (mmf.solve.solver_interface.IState method) get_imports() (in module mmf.archive) (in module mmf.utils.init)

get_imt() (mmf.math.fermi_functions class method) (mmf.math.special.fermi.fermi_functions class method) (mmf.math.special.fermi_functions class method) get_initial_state() (mmf.solve.solver_interface.IPlotProblem method) (mmf.solve.solver_interface.IProblem method) (mmf.solve.solver_interface.Problem method) get_logger() (mmf.async.pp.ServerMMF method) get_MAop() (mmf.math.multigrid.MG method) get_MAopWS() (mmf.math.multigrid.WignerSeitz method) get_mats() (mmf.math.multigrid.MG method) get_mu0() (mmf.physics.potentials.two_body.DoubleExponential method) (mmf.physics.potentials.two_body.DoubleGaussian method) get_N() (mmf.math.multigrid.MG method) get_name() (mmf.async.logger.Handler method) get_pip_requirements() (in module mmf.utils.run) get_score() (in module mmf.math.interp) get_w() (mmf.solve.broyden._JinvExtendedBroyden method) get_weights() (in module mmf.math.integrate.integrate_1d.quadrature) get_weights_y() (in module mmf.math.integrate.integrate_1d.quadrature) get_x() (mmf.solve.solver_interface.IJinv method) get_x_() (mmf.solve.solver_interface.State method) getargspec() (mmf.objects.StateVars class method) getChild() (mmf.async.logger.Logger method) getEffectiveLevel() (mmf.async.logger.Logger method) getLevelName() (in module mmf.async.logger) getLogger() (in module mmf.async.logger), [1] getLoggerClass() (in module mmf.async.logger) getMessage() (mmf.async.logger.LogRecord method) getStateFor() (mmf.async.pb.IDict method) (mmf.async.server.IDict method) globals (mmf.solve.solver_interface.IPlotProblem attribute) (mmf.solve.solver_interface.IProblem attribute) (mmf.solve.solver_interface.Problem attribute) gmchol() (in module mmf.math.linalg.cholesky.gmw81) go_trivial() (in module mmf.async.example) grad() (mmf.utils.mmf_theano.InverseUnaryScalarOp method) (mmf.utils.mmf_theano.Polynomial method) (mmf.utils.mmf_theano.ScalarOpFromExpr method) (mmf.utils.mmf_theano.UnaryScalarOp method) (mmf.utils.mmf_theano.UnaryScalarOpFromExpr method) groupSize (mmf.math.interp.Options attribute) guess (mmf.math.interp.Options attribute)

H

h() (mmf.physics.potentials.optical_traps.Model method) h_roots() (in module mmf.math.integrate.integrate_1d.quadrature) handle() (mmf.async.logger.Handler method) (mmf.async.logger.Logger method) (mmf.async.logger.NullHandler method) handleError() (mmf.async.logger.Handler method) Handler (class in mmf.async.logger) has_dx (mmf.solve.solver_interface.IPlotProblem attribute) (mmf.solve.solver_interface.IProblem attribute) (mmf.solve.solver_interface.Problem attribute), [1] has_F (mmf.solve.solver_interface.IPlotProblem attribute) (mmf.solve.solver_interface.IProblem attribute) (mmf.solve.solver_interface.Problem attribute), [1] has_G (mmf.solve.solver_interface.IPlotProblem attribute) (mmf.solve.solver_interface.IProblem attribute) (mmf.solve.solver_interface.Problem attribute), [1]

hasargs() (in module mmf.async.utils) hbar (mmf.physics.seq.S attribute) history (mmf.solve.solver_interface.BareState attribute) (mmf.solve.solver_interface.IState attribute) (mmf.solve.solver_interface.State attribute) (mmf.solve.solver_interface.State_x attribute) HO_radial (class in mmf.physics.seq) html_only (class in mmf.sphinx.ext.matplotlibext.only_directives) html_only_directive() (in module mmf.sphinx.ext.matplotlibext.only_directives) Hulet (class in mmf.physics.potentials.optical_traps)

I

I_inline() (mmf.math.multigrid.stencil.Interpolator method) I_mat() (mmf.math.multigrid.stencil.Interpolator method) IArchivable (mmf.interfaces interface) IDict (class in mmf.async.pb) (class in mmf.async.server) (class in mmf.math.ode.deq) ifft() (in module mmf.math.fft) ifftn() (in module mmf.math.fft) ifftshift() (in module mmf.math.fft) IFormatter (mmf.async.utils interface) ignore() (mmf.utils.debug.Memory method) IJinv (mmf.solve.solver_interface interface) imcontourf() (in module mmf.utils.mmf_plot) IMesg (mmf.solve.solver_interface interface) impl() (mmf.utils.mmf_theano.InverseUnaryScalarOp method) (mmf.utils.mmf_theano.ScalarOpFromExpr method) (mmf.utils.mmf_theano.UnaryScalarOp method) (mmf.utils.mmf_theano.UnaryScalarOpFromExpr method) implements() (in module mmf.interfaces) IMT (class in mmf.math.integrate.integrate_1d.imt) inactive_parameters (mmf.solve.solver_interface.Problem attribute) incompatibility() (mmf.solve.solver_interface.IJinv method) ind2sub() (in module mmf.math) index() (mmf.contrib.odict.odict method) index_support_code (mmf.math.multigrid.stencil.Code attribute) indices() (mmf.solve.solver_interface.State method) inf (mmf.physics.potentials.separable.EffectiveRange attribute) (mmf.physics.potentials.separable.Separable attribute) (mmf.physics.potentials.separable.SharpCutoff attribute) (mmf.physics.potentials.separable.SmoothCutoff attribute) (mmf.physics.potentials.separable.Yamaguchi attribute) info() (in module mmf.async.logger) (mmf.async.logger.Logger method) (mmf.async.logger.LoggerAdapter method) (mmf.solve.solver_interface.IMesg method) initial_recession_factor (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) InitializationError (class in mmf.objects) initialize() (mmf.objects.StateVars method) inline() (in module mmf.utils) (in module scipy.weave) inplace (mmf.solve.broyden.DyadicSum attribute) input() (in module mmf.utils.input) integral() (mmf.math.interp.EvenUnivariateSpline method) (mmf.math.interp.UnivariateSpline method) integrate() (in module mmf.math.integrate.integrate_1d.quadrature) (mmf.math.multigrid.MG method) IntegrationError (class in mmf.math.integrate) (class in mmf.math.integrate.integrate_1d.quadrature) Interface (mmf.interfaces interface) interface (mmf.interfaces.Attribute attribute)

Internal (class in mmf.objects) interp_mat() (in module mmf.math.interp) interpolate() (mmf.math.multigrid.MG method) InterpolatedUnivariateSpline (class in mmf.math.interp) Interpolator (class in mmf.math.interp) (class in mmf.math.multigrid.stencil) IntParam (class in mmf.math.integrate) IntStringFormatter (class in mmf.async.utils) Invalid (class in mmf.utils.input) InverseUnaryScalarOp (class in mmf.utils.mmf_theano) IPlotProblem (mmf.solve.solver_interface interface) IProblem (mmf.solve.solver_interface interface) IR() (mmf.math.multigrid.stencil.Interpolator method) IR_mat() (mmf.math.multigrid.stencil.Interpolator method) irfft() (in module mmf.math.fft) irfftn() (in module mmf.math.fft) isclass() (in module mmf.sphinx.ext.apigen) isEnabledFor() (mmf.async.logger.Logger method) (mmf.async.logger.LoggerAdapter method) isequal() (in module mmf.utils) isinterface() (in module mmf.sphinx.ext.apigen) ISolver (mmf.solve.solver_interface interface) ISolverData (mmf.solve.solver_interface interface) IState (mmf.solve.solver_interface interface) istest() (in module mmf.utils.mmf_test) ISync (class in mmf.async.client) items() (mmf.contrib.odict.odict method) (mmf.math.interp.UnivariateSpline method) (mmf.objects.Archivable method) (mmf.objects.Attr method) (mmf.objects.Computed method) (mmf.objects.StateVars method) iter() (mmf.solve.solver_interface.IMesg method) iter_data (mmf.solve.solver_interface.ISolverData attribute) (mmf.solve.solver_interface.SolverData attribute) iter_data() (mmf.solve.solver_interface.IPlotProblem method) (mmf.solve.solver_interface.IProblem method) (mmf.solve.solver_interface.Problem method) iterate() (mmf.solve.broyden_solvers.ExtendedBroyden method) (mmf.solve.solver_interface.Solver method) (mmf.solve.solvers.LineSearch method) (mmf.solve.solvers.SimpleIteration method) iteration_number (mmf.solve.solver_interface.ISolverData attribute) (mmf.solve.solver_interface.SolverData attribute) IterationError (class in mmf.solve.solver_interface) (class in mmf.solve.solver_utils) iteritems() (mmf.contrib.odict.odict method) iterkeys() (mmf.contrib.odict.odict method) itervalues() (mmf.contrib.odict.odict method)

J

J() (mmf.solve.test_problems.TwoDimensional.Himmelblau method) (mmf.solve.test_problems.TwoDimensional.MexicanHat method) (mmf.solve.test_problems.TwoDimensional.SensitiveParameter method) j0_diag (mmf.solve.solver_interface.IPlotProblem attribute) (mmf.solve.solver_interface.IProblem attribute) (mmf.solve.solver_interface.Problem attribute), [1] j_inv_F (mmf.solve.solver_interface.SolverData attribute) j_inv_G (mmf.solve.solver_interface.SolverData attribute) j_inv_incompatibility (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute)

Jinv() (mmf.solve.test_problems.TwoDimensional.Himmelblau method) (mmf.solve.test_problems.TwoDimensional.MexicanHat method) (mmf.solve.test_problems.TwoDimensional.SensitiveParameter method) Jinv_tol (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) JinvBroyden (class in mmf.solve.broyden) JinvExtendedBroydenFull (class in mmf.solve.broyden)

K

k (mmf.math.interp.Options attribute) k_cot_delta() (mmf.physics.potentials.separable.Separable method) k_cot_delta_analytic() (mmf.physics.potentials.two_body.PoschlTeller method)

keys() (mmf.contrib.odict.odict method) (mmf.solve.solver_interface.State method) kill_hosts() (in module mmf.async.pp) ksum() (in module mmf.math.integrate)

L

L (mmf.math.multigrid.MG attribute) Lambda (mmf.math.integrate.IntParam attribute) (mmf.physics.potentials.separable.EffectiveRange attribute) (mmf.physics.potentials.separable.SharpCutoff attribute) (mmf.physics.potentials.separable.SmoothCutoff attribute) (mmf.physics.potentials.separable.Yamaguchi attribute) lambdify_cse() (in module mmf.utils.mmf_sympy) LambertW() (in module mmf.math) (in module mmf.math.special) Laplacian (mmf.math.multigrid.stencil.Poisson1D attribute) (mmf.math.multigrid.stencil.Poisson2D attribute) (mmf.math.multigrid.stencil.Poisson3D attribute) last_state (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.ISolver attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) latex2html() (in module mmf.sphinx.ext.matplotlibext.mathmpl) latex2png() (in module mmf.sphinx.ext.matplotlibext.mathmpl) latex_math (class in mmf.sphinx.ext.matplotlibext.mathmpl) latex_only (class in mmf.sphinx.ext.matplotlibext.only_directives) latex_only_directive() (in module mmf.sphinx.ext.matplotlibext.only_directives) LaTeXPlotProperties (class in mmf.utils.mmf_plot) launch() (in module mmf.examples.pp_example) launch_pp_terminals() (in module mmf.utils.pymacs) leastsq() (in module mmf.fit.lsq) LerchPhi() (in module mmf.math) (in module mmf.math.special) (in module mmf.math.special.lerch) levin() (in module mmf.math.integrate.acceleration) levin_sum() (in module mmf.math.integrate) Li() (in module mmf.math) (in module mmf.math.special) (in module mmf.math.special.lerch) line_search() (in module mmf.solve.solver_utils) linear_refinement (mmf.math.interp.Options attribute) LineData (class in mmf.utils.mmf_profile) LineSearch (class in mmf.solve.solvers) ListCollection (class in mmf.utils.mmf_plot) listen() (in module mmf.async.remote_debug) load() (in module mmf.utils.mmf_profile)

log() (in module mmf.async.logger) (mmf.async.logger.Logger method) (mmf.async.logger.LoggerAdapter method) log_to_file() (in module mmf.utils.logging) log_to_stream() (in module mmf.utils.logging) log_transform (class in mmf.math.ode.deq) Logger (class in mmf.async.logger) LoggerAdapter (class in mmf.async.logger) LoggerTraceback (class in mmf.utils.logging) LogRecord (class in mmf.async.logger) ls_allow_backstep (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) ls_allow_bad_steps (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) ls_avg_descent_factor (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) ls_exact (mmf.solve.solvers.LineSearch attribute) ls_exact_rel_tol (mmf.solve.solvers.LineSearch attribute) ls_linear (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) ls_linear_min_step (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) ls_max (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) ls_max_scale_factor (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) ls_max_steps (mmf.solve.solvers.LineSearch attribute) ls_min_scale_factor (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) ls_min_step (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) ls_n_bad_steps (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) ls_r (mmf.math.multigrid.WignerSeitz attribute) ls_strategy (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) lsq() (in module mmf.fit.lsq) lsqf() (in module mmf.fit.lsq) lsqm() (in module mmf.fit.lsq)

M

m (mmf.physics.potentials.separable.EffectiveRange attribute) (mmf.physics.potentials.separable.Separable attribute) (mmf.physics.potentials.separable.SharpCutoff attribute) (mmf.physics.potentials.separable.SmoothCutoff attribute) (mmf.physics.potentials.separable.Yamaguchi attribute) (mmf.physics.seq.S attribute) make_decorator() (in module mmf.utils.mmf_test) make_node() (mmf.utils.mmf_theano.Polynomial method) makefig() (in module mmf.sphinx.ext.matplotlibext.plot_directive) makeLogRecord() (in module mmf.async.logger) makeRecord() (mmf.async.logger.Logger method) (mmf.utils.logging.MMFLogger method) manager (mmf.async.logger.Logger attribute) ManageRemoteServer (class in mmf.async.pp) math_directive() (in module mmf.sphinx.ext.matplotlibext.mathmpl) math_role() (in module mmf.sphinx.ext.matplotlibext.mathmpl) max_iter (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) max_step (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) max_time (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) max_weighted_step (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) maxTime (mmf.math.interp.Options attribute) mc_angular_average() (in module mmf.math.integrate) mc_integrate() (in module mmf.math.integrate) mchol2() (in module mmf.math.linalg.cholesky.gmw81) mdb() (in module mmf.utils.mdb) MDBBreak (class in mmf.utils.mdb) MediumScale (class in mmf.solve.test_problems) MediumScale.GomexRuggiero (class in mmf.solve.test_problems) memoize() (in module mmf.utils) MemoizedContainer (class in mmf.objects) Memory (class in mmf.utils.debug) memory() (in module mmf.utils) Mesg (class in mmf.solve.solver_interface) mesgs (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.ISolver attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) message_indent (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) messages (mmf.solve.solver_interface.BareState attribute) (mmf.solve.solver_interface.IMesg attribute) (mmf.solve.solver_interface.IState attribute) (mmf.solve.solver_interface.State attribute) (mmf.solve.solver_interface.State_x attribute) method (mmf.solve.broyden._JinvExtendedBroyden attribute) MG (class in mmf.math.multigrid) mg (mmf.math.multigrid.WignerSeitz attribute) mg_sparse_tol_factor (mmf.math.multigrid.MG attribute) mgWS (mmf.math.multigrid.WignerSeitz attribute) min_abs_step (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) min_rel_step (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) min_step (mmf.solve.solvers.LineSearch attribute) Mine (class in mmf.solve.test_problems) Mine.Sqrt (class in mmf.solve.test_problems) mmf (module) mmf.archive (module) mmf.async (module) mmf.async.client (module) mmf.async.example (module) mmf.async.logger (module) mmf.async.pb (module) mmf.async.pp (module) mmf.async.queueserver (module) mmf.async.remote_debug (module) mmf.async.server (module) mmf.async.tst (module) mmf.async.twisted_utils (module) mmf.async.utils (module) mmf.contrib (module) mmf.contrib.odict (module) mmf.examples (module) mmf.examples.init_example (module) mmf.examples.init_example.mod1 (module) mmf.examples.init_example.mod2 (module) mmf.examples.init_example.mod3 (module) mmf.examples.init_example.mod4 (module) mmf.examples.init_example.mod4.mod4a (module) mmf.examples.inline_example (module) mmf.examples.pp_example (module) mmf.fit (module) mmf.fit.lsq (module) mmf.interfaces (module) mmf.math (module) mmf.math.differentiate (module) mmf.math.earray (module) mmf.math.fft (module) mmf.math.integrate (module) mmf.math.integrate.acceleration (module) mmf.math.integrate.integrate_1d (module) mmf.math.integrate.integrate_1d.clenshaw_curtis (module) mmf.math.integrate.integrate_1d.imt (module) mmf.math.integrate.integrate_1d.quadrature (module) mmf.math.integrate.multidimen (module) mmf.math.integrate.odepack (module) mmf.math.interp (module) mmf.math.linalg (module) mmf.math.linalg.cholesky (module) mmf.math.linalg.cholesky.cholesky_ (module) mmf.math.linalg.cholesky.gmw81 (module) mmf.math.linalg.cholesky.se99 (module) mmf.math.linalg.pardiso (module)

mmf.math.multigrid (module) mmf.math.multigrid.notes (module) mmf.math.multigrid.notes.multigrid_notes (module) mmf.math.multigrid.stencil (module) mmf.math.ode (module) mmf.math.ode.deq (module) mmf.math.ode.test_deq (module) mmf.math.special (module) mmf.math.special.fermi (module) mmf.math.special.lerch (module) mmf.objects (module) mmf.objects.attributes (module) mmf.physics (module) mmf.physics.potentials (module) mmf.physics.potentials.optical_traps (module) mmf.physics.potentials.separable (module) mmf.physics.potentials.two_body (module) mmf.physics.seq (module) mmf.plotting (module) mmf.plotting.matplotlib (module) mmf.plotting.matplotlib.figures (module) mmf.signal (module) mmf.signal.spectrum (module) mmf.solve (module) mmf.solve.broyden (module) mmf.solve.broyden_solvers (module) mmf.solve.solver_interface (module) mmf.solve.solver_utils (module) mmf.solve.solvers (module) mmf.solve.test_problems (module) mmf.sphinx (module) mmf.sphinx.ext (module) mmf.sphinx.ext.apigen (module) mmf.sphinx.ext.matplotlibext (module) mmf.sphinx.ext.matplotlibext.mathmpl (module) mmf.sphinx.ext.matplotlibext.only_directives (module) mmf.sphinx.ext.matplotlibext.plot_directive (module) mmf.sphinx.ext.mmfext (module) mmf.utils (module) mmf.utils.debug (module) mmf.utils.decorators (module) mmf.utils.examples (module) mmf.utils.examples.mmf_test_example (module) mmf.utils.init (module) mmf.utils.input (module) mmf.utils.logging (module) mmf.utils.mdb (module) mmf.utils.mmf_plot (module) mmf.utils.mmf_profile (module) mmf.utils.mmf_sympy (module) mmf.utils.mmf_test (module) mmf.utils.mmf_theano (module) mmf.utils.mmf_warnings (module) mmf.utils.myvectorize (module) mmf.utils.pymacs (module) mmf.utils.run (module) mmf.utils.script (module) mmf.utils.text (module) mmf_method (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) MMFFormatter (class in mmf.utils.logging) MMFLogger (class in mmf.utils.logging) MMFTracebackType (class in mmf.utils.logging) modchol() (in module mmf.math.linalg) (in module mmf.math.linalg.cholesky.se99) Model (class in mmf.physics.potentials.optical_traps) ModifiedBroyden (class in mmf.solve.broyden_solvers) (class in mmf.solve.solvers) monkey_patch_inset_locator() (in module mmf.utils.mmf_plot) MonkeypatchAutodoc (class in mmf.sphinx.ext.apigen) MonkeypatchAutodoc.MyAttributeDocumenter (class in mmf.sphinx.ext.apigen) MonkeypatchAutodoc.MyDataDocumenter (class in mmf.sphinx.ext.apigen) MonkeypatchAutodoc.MyMethodDocumenter (class in mmf.sphinx.ext.apigen) MonkeypatchAutodoc.MyModuleDocumenter (class in mmf.sphinx.ext.apigen) mquad() (in module mmf.math.integrate) (in module mmf.math.integrate.integrate_1d.quadrature) msg() (mmf.solve.solver_interface.IMesg method) (mmf.utils.StatusBar.Bar method) MsgQueue (class in mmf.async.utils) mtype() (mmf.math.linalg.pardiso.Pardiso method) mu0 (mmf.physics.potentials.two_body.DoubleExponential attribute) (mmf.physics.potentials.two_body.DoubleGaussian attribute) (mmf.physics.potentials.two_body.PoschlTeller attribute) muab2mupm() (in module mmf.physics.potentials.optical_traps) MultiGrid (in module mmf.math.multigrid) MultigridBase (class in mmf.math.multigrid.notes.multigrid_notes), [1] MultigridNeumann (class in mmf.math.multigrid.notes.multigrid_notes), [1] MultigridPeriodic (class in mmf.math.multigrid.notes.multigrid_notes), [1] mup_eff() (in module mmf.physics.potentials.optical_traps) mupm2muab() (in module mmf.physics.potentials.optical_traps) MyCondition (class in mmf.async.utils) MyLogger (class in mmf.async.logger) mynorm() (mmf.math.multigrid.MG method) MySet (class in mmf.async.utils)

N

n (mmf.math.multigrid.MG attribute) (mmf.math.multigrid.WignerSeitz attribute) N() (mmf.math.fermi_functions class method) (mmf.math.special.fermi.fermi_functions class method) (mmf.math.special.fermi_functions class method) n_0 (mmf.math.multigrid.MG attribute) n_bad (mmf.solve.broyden_solvers.ExtendedBroyden attribute) N_bad_steps (mmf.solve.solvers.LineSearch attribute) n_max (mmf.math.interp.Options attribute) (mmf.solve.broyden.DyadicSum attribute) n_min (mmf.math.interp.Options attribute) (mmf.math.multigrid.MG attribute) n_new (mmf.math.interp.Options attribute) n_prev_steps (mmf.solve.broyden._JinvExtendedBroyden attribute) N_s() (mmf.math.fermi_functions class method) (mmf.math.special.fermi.fermi_functions class method) (mmf.math.special.fermi_functions class method) n_smooth (mmf.math.multigrid.MG attribute) nab() (in module mmf.physics.potentials.optical_traps) (mmf.physics.potentials.optical_traps.Model method) name (mmf.async.logger.Handler attribute) NameClashWarning (class in mmf.objects) NameClashWarning1 (class in mmf.objects)

NameClashWarning2 (class in mmf.objects) new() (in module mmf.utils.debug) (mmf.solve.solver_interface.IMesg method) (mmf.solve.solver_interface.ISolverData method) (mmf.solve.solver_interface.SolverData method) (mmf.utils.debug.Memory method) new_bar() (mmf.utils.StatusBar class method) Nfunc (mmf.math.integrate.IntParam attribute) nin (mmf.utils.mmf_theano.UnaryScalarOpFromExpr attribute) no_restart (mmf.solve.broyden_solvers.ExtendedBroyden attribute) NoCopy (class in mmf.objects) NoDescentError (class in mmf.solve.solver_utils) NoRefinement (class in mmf.math.interp) norm_p (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.ISolver attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) notify_update() (mmf.async.pb.IDict method) (mmf.async.server.IDict method) (mmf.math.ode.deq.IDict method) nottest() (in module mmf.utils.mmf_test) nout (mmf.utils.mmf_theano.UnaryScalarOpFromExpr attribute) NullHandler (class in mmf.async.logger) (class in mmf.utils.logging)

O

ODE (class in mmf.math.ode.deq) ODE_1_2 (class in mmf.math.ode.deq) odeint() (in module mmf.math.integrate.odepack) odict (class in mmf.contrib.odict) offset (mmf.math.multigrid.stencil.Interpolator attribute) ok_() (in module mmf.utils.mmf_test) (mmf.utils.mmf_test.TestCase method) okay() (in module mmf.utils.input) onConnect() (mmf.async.twisted_utils.RIDict method) onFail() (mmf.async.twisted_utils.RIDict method) only_base (class in mmf.sphinx.ext.matplotlibext.only_directives)

onRequest() (mmf.async.queueserver.QueueServer method) onUpdate() (mmf.async.queueserver.QueueServer method) (mmf.async.twisted_utils.RIDict method) option (class in mmf.objects) OptionParser (class in mmf.utils.script) Options (class in mmf.math.interp) (class in mmf.objects) orthogonalize() (mmf.solve.broyden.DyadicSum method) os_do() (in module mmf.utils.script) out_of_date() (in module mmf.sphinx.ext.matplotlibext.plot_directive) output_types() (mmf.utils.mmf_theano.ScalarOpFromExpr method) (mmf.utils.mmf_theano.UnaryScalarOpFromExpr method)

P

P() (mmf.math.fermi_functions class method) (mmf.math.special.fermi.fermi_functions class method) (mmf.math.special.fermi_functions class method) p_c (mmf.physics.potentials.separable.EffectiveRange attribute) (mmf.physics.potentials.separable.Separable attribute), [1] (mmf.physics.potentials.separable.SharpCutoff attribute) (mmf.physics.potentials.separable.SmoothCutoff attribute) (mmf.physics.potentials.separable.Yamaguchi attribute) param (mmf.physics.potentials.optical_traps.Model attribute) parameter (class in mmf.objects) parameters (mmf.solve.solver_interface.State attribute), [1] (mmf.solve.solver_interface.State_x attribute), [1] params (mmf.math.ode.deq.SympyODE attribute) Pardiso (class in mmf.math.linalg.pardiso) PardisoError (class in mmf.math.linalg.pardiso) parse_args() (mmf.utils.script.OptionParser method) perform() (mmf.utils.mmf_theano.Polynomial method) periodic_center (mmf.math.multigrid.MG attribute) plot (mmf.math.interp.Options attribute) (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) plot() (mmf.physics.potentials.two_body.Potential method) plot3d() (in module mmf.utils.mmf_plot) plot3dmpl() (in module mmf.utils.mmf_plot) plot_directive() (in module mmf.sphinx.ext.matplotlibext.plot_directive) plot_err() (in module mmf.utils.mmf_plot) plot_errorbars() (in module mmf.utils.mmf_plot) plot_exact (mmf.math.interp.Options attribute) plot_gE() (mmf.physics.potentials.two_body.Potential method) plot_iteration() (mmf.solve.solver_interface.IPlotProblem method) plot_N (mmf.math.interp.Options attribute) plot_spline (mmf.math.interp.Options attribute) plot_u() (mmf.physics.potentials.two_body.Potential method) PlotProblem (class in mmf.solve.solver_interface) Poisson1D (class in mmf.math.multigrid.stencil) Poisson2D (class in mmf.math.multigrid.stencil) Poisson3D (class in mmf.math.multigrid.stencil) PoissonBase (class in mmf.math.multigrid.stencil) poll_delay (mmf.async.client.TkSync attribute)

Polynomial (class in mmf.utils.mmf_theano) pop() (mmf.contrib.odict.odict method) popitem() (mmf.contrib.odict.odict method) PoschlTeller (class in mmf.physics.potentials.two_body) Potential (class in mmf.physics.potentials.two_body) PotentialV0R0 (class in mmf.physics.potentials.two_body) PowerDecay (class in mmf.math.integrate.integrate_1d.quadrature) pre_solve_hook() (mmf.solve.solver_interface.IPlotProblem method) (mmf.solve.solver_interface.IProblem method) preconditioner (mmf.math.multigrid.MG attribute) preprocess() (in module mmf.sphinx.ext.mmfext) print_() (mmf.utils.StatusBar class method) (mmf.utils.StatusBar.Bar method) print_data() (mmf.utils.mmf_profile.LineData method) print_iter_frequency (mmf.math.multigrid.WignerSeitz attribute) print_iteration_info() (mmf.solve.solver_interface.ISolver method) (mmf.solve.solver_interface.Solver method) print_mem() (in module mmf.utils) Problem (class in mmf.async.example) (class in mmf.math.multigrid.notes.multigrid_notes), [1] (class in mmf.solve.solver_interface) problem_F() (mmf.solve.solver_interface.Solver method) problem_G() (mmf.solve.solver_interface.Solver method) problem_step() (mmf.solve.solver_interface.Solver method) Problem_x (class in mmf.solve.solver_interface) process() (mmf.async.logger.LoggerAdapter method) process_job() (in module mmf.examples.pp_example) process_requests() (mmf.async.queueserver.QueueServer method) process_updates() (mmf.async.queueserver.QueueServer method) process_vars() (in module mmf.objects) Profile (class in mmf.utils.mmf_profile) ProtocolError (class in mmf.async.utils) put_request() (mmf.async.queueserver.QueueServer method) put_update() (mmf.async.queueserver.QueueServer method)

Q

quad() (in module mmf.math.integrate) (in module mmf.math.integrate.integrate_1d.quadrature)

QueueServer (class in mmf.async.queueserver)

R

R (mmf.math.multigrid.WignerSeitz attribute) (mmf.physics.potentials.two_body.Potential attribute) R() (in module mmf.physics.seq) r0 (mmf.physics.potentials.separable.VPoschlTeller attribute) R_inline() (mmf.math.multigrid.stencil.Interpolator method) R_mat() (mmf.math.multigrid.stencil.Interpolator method) r_tiny (mmf.math.multigrid.WignerSeitz attribute) raises() (in module mmf.utils.mmf_test) Rbf (class in mmf.math.interp) rdot() (mmf.math.ode.deq.log_transform method) (mmf.math.ode.deq.Transform method) rdot_r() (mmf.math.ode.deq.log_transform method) (mmf.math.ode.deq.Transform method) re_ (mmf.physics.potentials.two_body.PoschlTeller attribute) recession_factor (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) RecLimit (mmf.math.integrate.IntParam attribute) record_history() (mmf.solve.solver_interface.BareState method) (mmf.solve.solver_interface.IState method) RectBivariateSpline (class in mmf.math.interp) RecView (class in mmf.objects) recview() (in module mmf.objects) Ref (class in mmf.objects) reff() (mmf.physics.potentials.separable.Separable method) register() (mmf.async.client.ISync method) (mmf.async.client.TkSync method) register_plotter() (in module mmf.async.client) rel_tol (mmf.math.interp.Options attribute) (mmf.math.multigrid.MG attribute) release() (mmf.async.logger.Handler method) RelTol (mmf.math.integrate.IntParam attribute) remaining() (mmf.utils.Timer method) remove() (mmf.async.utils.MySet method) removeHandler() (mmf.async.logger.Logger method)

repr_() (in module mmf.archive) reset() (mmf.solve.broyden.DyadicSum method) (mmf.solve.solver_interface.IJinv method) (mmf.utils.StatusBar class method) (mmf.utils.Timer method) reset_Jinv (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) resetwarnings() (in module mmf.utils.mmf_warnings) reshape() (mmf.math.multigrid.MG method) restore() (in module mmf.archive) restrict() (mmf.math.multigrid.MG method) result (mmf.async.pp.Task attribute) resume() (mmf.objects.StateVars method) return_Dprecon() (mmf.math.multigrid.MG method) return_DpreconWS() (mmf.math.multigrid.WignerSeitz method) reverse() (mmf.contrib.odict.odict method) rfft() (in module mmf.math.fft) rfftn() (in module mmf.math.fft) Richardson() (in module mmf.math.integrate) RIDict (class in mmf.async.twisted_utils) robust_solve() (mmf.math.multigrid.MG method) robust_solve2() (mmf.math.multigrid.MG method) root (mmf.async.logger.Logger attribute) roots() (mmf.math.interp.EvenUnivariateSpline method) (mmf.math.interp.UnivariateSpline method) rsum() (in module mmf.math.integrate) run() (in module mmf.async.client) (in module mmf.examples.pp_example) (in module mmf.sphinx.ext.matplotlibext.only_directives) (in module mmf.utils.mmf_test) (mmf.async.pp.ManageRemoteServer method) (mmf.async.twisted_utils.TwistedThread method) run_cmd() (in module mmf.utils.run) run_reactor() (in module mmf.async.twisted_utils) run_reactor_as_thread() (in module mmf.async.twisted_utils) runfile() (in module mmf.sphinx.ext.matplotlibext.plot_directive)

S

S (class in mmf.physics.seq) S() (in module mmf.math) (in module mmf.math.special) S_d (mmf.math.multigrid.WignerSeitz attribute) save (mmf.objects.Computed attribute) save_current_state() (mmf.math.multigrid.MG method) savefig() (mmf.plotting.matplotlib.figures.Figures method) ScalarOpFromExpr (class in mmf.utils.mmf_theano) ScarfII (class in mmf.physics.seq) schedule (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.ISolver attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) scipy.weave (module) se99() (in module mmf.math.linalg.cholesky.cholesky_) (in module mmf.math.linalg.cholesky.se99) sensitive (mmf.solve.solver_interface.BareState attribute) (mmf.solve.solver_interface.IState attribute) (mmf.solve.solver_interface.State attribute) (mmf.solve.solver_interface.State_x attribute) sensitive_abs_tol (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) sensitive_parameters (mmf.solve.solver_interface.State attribute), [1] (mmf.solve.solver_interface.State_x attribute), [1] sensitive_rel_tol (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) Separable (class in mmf.physics.potentials.separable) ServerMMF (class in mmf.async.pp) set_ainv() (mmf.physics.potentials.two_body.PoschlTeller method) (mmf.physics.potentials.two_body.SoonYongPotential2 method) set_ainv_re() (mmf.physics.potentials.two_body.PoschlTeller method) (mmf.physics.potentials.two_body.PotentialV0R0 method) (mmf.physics.potentials.two_body.SoonYongPotential2 method) set_ainv_re_VV() (mmf.physics.potentials.two_body.SoonYongPotential2 method) set_collections() (mmf.utils.mmf_plot.ListCollection method) set_g() (mmf.physics.potentials.separable.EffectiveRange method) (mmf.physics.potentials.separable.Separable method) (mmf.physics.potentials.separable.SharpCutoff method) (mmf.physics.potentials.separable.SmoothCutoff method) (mmf.physics.potentials.separable.Yamaguchi method) set_mu0() (mmf.physics.potentials.two_body.DoubleExponential method) (mmf.physics.potentials.two_body.DoubleGaussian method) set_name() (mmf.async.logger.Handler method) set_point() (mmf.solve.solver_interface.IJinv method) set_smoothing_factor() (mmf.math.interp.UnivariateSpline method) set_trace() (in module mmf.utils.mmf_test) set_x_() (mmf.solve.solver_interface.State method) setastest() (in module mmf.utils.decorators) (in module mmf.utils.mmf_test) setdefault() (mmf.contrib.odict.odict method) setFormatter() (mmf.async.logger.Handler method) setLevel() (mmf.async.logger.Handler method) (mmf.async.logger.Logger method) setLoggerClass() (in module mmf.async.logger) (in module mmf.utils.logging) setStateFor() (mmf.async.pb.IDict method) (mmf.async.server.IDict method) setup() (in module mmf.sphinx.ext.apigen) (in module mmf.sphinx.ext.matplotlibext.mathmpl) (in module mmf.sphinx.ext.matplotlibext.only_directives) (in module mmf.sphinx.ext.matplotlibext.plot_directive) (in module mmf.sphinx.ext.mmfext) setup_figure() (mmf.plotting.matplotlib.figures.Figures method) setup_sphinx() (in module mmf) shape (mmf.math.multigrid.MG attribute) SharpCutoff (class in mmf.physics.potentials.separable) show (mmf.solve.solver_interface.IMesg attribute) showwarning() (in module mmf.utils.mmf_warnings) sigma (mmf.solve.broyden.DyadicSum attribute) simplefilter() (mmf.objects.NameClashWarning class method) SimpleIteration (class in mmf.solve.solvers) skipif() (in module mmf.utils.decorators) (in module mmf.utils.mmf_test) skipknownfailure() (in module mmf.utils.decorators) (in module mmf.utils.mmf_test) slow() (in module mmf.utils.decorators) (in module mmf.utils.mmf_test) smooth_inplace() (mmf.math.multigrid.MG method) SmoothCutoff (class in mmf.physics.potentials.separable) smoothing_algorithm (mmf.math.multigrid.MG attribute) smoothing_weight (mmf.math.multigrid.MG attribute) Solution (class in mmf.math.ode.deq)

solve() (in module mmf.solve.solver_interface) (mmf.math.linalg.pardiso.Pardiso method) (mmf.math.multigrid.stencil.Code static method), [1] (mmf.solve.solver_interface.ISolver method) (mmf.solve.solver_interface.Solver method) solve_() (mmf.math.multigrid.MG method) solve_using_preconditioner() (mmf.math.multigrid.MG method) solve_using_preconditionerWS() (mmf.math.multigrid.WignerSeitz method) Solver (class in mmf.solve.solver_interface) solver (mmf.math.linalg.pardiso.Pardiso attribute) solver() (mmf.math.multigrid.MG method) solver_data (mmf.solve.solver_interface.BareState attribute) (mmf.solve.solver_interface.IState attribute) (mmf.solve.solver_interface.State attribute) (mmf.solve.solver_interface.State_x attribute) solver_data0 (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.SimpleIteration attribute) solver_set_x_() (mmf.solve.solver_interface.BareState method) (mmf.solve.solver_interface.IState method) solver_update() (mmf.solve.solver_interface.IPlotProblem method) (mmf.solve.solver_interface.IProblem method) (mmf.solve.solver_interface.Problem method) SolverData (class in mmf.solve.solver_interface) SoonYongPotential (in module mmf.physics.potentials.two_body) SoonYongPotential2 (class in mmf.physics.potentials.two_body) sort() (mmf.contrib.odict.odict method) sparse_solver (mmf.math.multigrid.MG attribute) sparse_solver_iterations (mmf.math.multigrid.MG attribute) (mmf.math.multigrid.WignerSeitz attribute) special_y() (mmf.physics.potentials.optical_traps.Model method) spectrum() (in module mmf.signal.spectrum) spherical_int() (in module mmf.math.integrate) spherical_int2() (in module mmf.math.integrate) spherical_int2_no_r() (in module mmf.math.integrate) spherical_int_no_r() (in module mmf.math.integrate) split() (mmf.async.utils.IFormatter method) (mmf.async.utils.IntStringFormatter static method) ssh_connect() (mmf.async.pp.ManageRemoteServer method) ssum() (in module mmf.math.integrate) start_logging() (in module mmf.utils.logging) start_remote_servers() (mmf.async.pp.ServerMMF method) State (class in mmf.solve.solver_interface) state0 (mmf.solve.solver_interface.IPlotProblem attribute) (mmf.solve.solver_interface.IProblem attribute) (mmf.solve.solver_interface.Problem attribute) State_x (class in mmf.solve.solver_interface) StateVars (class in mmf.objects) status() (mmf.solve.solver_interface.IMesg method) StatusBar (class in mmf.utils) StatusBar.Bar (class in mmf.utils) StatusMesg (class in mmf.solve.solver_interface) Stencil (class in mmf.math.multigrid.stencil) stencil_0 (mmf.math.multigrid.WignerSeitz attribute) stencil_d2r (mmf.math.multigrid.WignerSeitz attribute) stencil_dr (mmf.math.multigrid.WignerSeitz attribute) step() (in module mmf.math) (in module mmf.math.special) (mmf.solve.solver_interface.IPlotProblem method) (mmf.solve.solver_interface.IProblem method) (mmf.solve.solver_interface.Problem method) stop() (mmf.async.twisted_utils.TwistedThread method) stop_reactor() (in module mmf.async.twisted_utils) store (mmf.solve.solver_interface.IMesg attribute) store_history (mmf.solve.solver_interface.BareState attribute) (mmf.solve.solver_interface.IState attribute) (mmf.solve.solver_interface.State attribute) (mmf.solve.solver_interface.State_x attribute) StreamHandler (class in mmf.async.logger) sub2ind() (in module mmf.math) submit() (mmf.async.pp.ServerMMF method) subscribe() (mmf.async.twisted_utils.RIDict method) suspend() (mmf.objects.StateVars method) SympyODE (class in mmf.math.ode.deq)

T

T (mmf.math.multigrid.stencil.Poisson1D attribute) (mmf.math.multigrid.stencil.Poisson2D attribute) (mmf.math.multigrid.stencil.Poisson3D attribute) tabulate() (in module mmf.math.interp) Task (class in mmf.async.pp) terminate() (mmf.async.pb.IDict method) (mmf.async.server.IDict method) terminated (mmf.async.pb.IDict attribute) (mmf.async.server.IDict attribute) test() (mmf.solve.test_problems.TwoDimensional method) TestCase (class in mmf.utils.mmf_test) text() (mmf.plotting.matplotlib.figures.Figures method) threads (mmf.math.linalg.pardiso.Pardiso attribute) timed() (in module mmf.utils.mmf_test) TimeExpired (class in mmf.utils.mmf_test) Timer (class in mmf.utils) TkSync (class in mmf.async.client)

tol_safety_factor (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) TolMet (class in mmf.math.interp) Transform (class in mmf.math.ode.deq) trim() (in module mmf.utils.text) try_linsolve (mmf.math.multigrid.MG attribute) try_weighted_step (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) tst() (in module mmf.solve.broyden_solvers) TwistedThread (class in mmf.async.twisted_utils) TwoDimensional (class in mmf.solve.test_problems) TwoDimensional.Himmelblau (class in mmf.solve.test_problems) TwoDimensional.MexicanHat (class in mmf.solve.test_problems) TwoDimensional.SensitiveParameter (class in mmf.solve.test_problems)

U

UnaryScalarOp (class in mmf.utils.mmf_theano) UnaryScalarOpFromExpr (class in mmf.utils.mmf_theano) unique_list() (in module mmf.utils) Units (class in mmf.physics.potentials.optical_traps) UnivariateSpline (class in mmf.math.interp)

update() (mmf.async.client.ISync method) (mmf.async.client.TkSync method) (mmf.async.utils.MySet method) (mmf.contrib.odict.odict method) (mmf.objects.Container method) (mmf.solve.broyden._JinvExtendedBroyden method) (mmf.solve.solver_interface.IJinv method) use_cache (mmf.solve.solver_interface.State attribute) (mmf.solve.solver_interface.State_x attribute) use_svd (mmf.solve.broyden.DyadicSum attribute) usesTime() (mmf.async.logger.Formatter method)

V

v() (mmf.physics.potentials.separable.EffectiveRange method) (mmf.physics.potentials.separable.Separable method) (mmf.physics.potentials.separable.SharpCutoff method) (mmf.physics.potentials.separable.SmoothCutoff method) V() (mmf.physics.potentials.separable.VPoschlTeller method) v() (mmf.physics.potentials.separable.Yamaguchi method) V0 (mmf.physics.potentials.separable.VPoschlTeller attribute) values() (mmf.contrib.odict.odict method) vars (mmf.math.ode.deq.SympyODE attribute) vectorize (class in mmf.utils.myvectorize) vectorize() (in module mmf.utils)

Verbose (mmf.math.integrate.IntParam attribute) verbose (mmf.math.interp.Options attribute) (mmf.math.linalg.pardiso.Pardiso attribute) verbosity (mmf.math.multigrid.MG attribute) (mmf.math.multigrid.WignerSeitz attribute) (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) volume() (mmf.math.multigrid.MG method) (mmf.math.multigrid.WignerSeitz method) Vp() (mmf.physics.potentials.separable.VPoschlTeller method) VPoschlTeller (class in mmf.physics.potentials.separable) Vpq() (mmf.physics.potentials.separable.VPoschlTeller method)

W

W (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.ModifiedBroyden attribute) wait() (mmf.async.pb.IDict method) (mmf.async.server.IDict method) (mmf.async.utils.MyCondition method) wait_for_update() (mmf.async.twisted_utils.RIDict method) warn() (in module mmf.async.logger) (in module mmf.utils.mmf_warnings) (mmf.async.logger.Logger method) (mmf.solve.solver_interface.IMesg method) (mmf.utils.logging.MMFLogger method) warning() (in module mmf.async.logger) (mmf.async.logger.Logger method) (mmf.async.logger.LoggerAdapter method) weight (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) weighted (mmf.math.interp.Options attribute)

WignerSeitz (class in mmf.math.multigrid) with_args() (in module mmf.utils.decorators) (in module mmf.utils.mmf_test) with_setup() (in module mmf.utils.mmf_test) wrap() (mmf.utils.text.DocWrapper method) write() (mmf.async.pp.decorate_logger method) write_() (mmf.utils.StatusBar class method) write_char() (in module mmf.sphinx.ext.matplotlibext.plot_directive)

X

X (mmf.math.multigrid.MG attribute) (mmf.solve.broyden._JinvExtendedBroyden attribute) x (mmf.solve.solver_interface.IJinv attribute) x() (mmf.math.multigrid.MG method) (mmf.math.ode.deq.Transform method) (mmf.math.ode.deq.log_transform method) x0 (mmf.solve.solver_interface.IJinv attribute) x_ (mmf.solve.solver_interface.BareState attribute) (mmf.solve.solver_interface.IState attribute) (mmf.solve.solver_interface.State attribute) x_scale (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.solver_interface.IPlotProblem attribute) (mmf.solve.solver_interface.IProblem attribute) (mmf.solve.solver_interface.Problem attribute)

x_tol (mmf.math.interp.Options attribute) (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.ISolver attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) x_tol_rel (mmf.solve.broyden_solvers.ExtendedBroyden attribute) (mmf.solve.broyden_solvers.ModifiedBroyden attribute) (mmf.solve.solver_interface.ISolver attribute) (mmf.solve.solver_interface.Solver attribute) (mmf.solve.solvers.LineSearch attribute) (mmf.solve.solvers.ModifiedBroyden attribute) (mmf.solve.solvers.SimpleIteration attribute) x_y() (mmf.math.integrate.integrate_1d.quadrature.ExpDecay method) (mmf.math.integrate.integrate_1d.quadrature.PowerDecay method) xticks() (in module mmf.utils.mmf_plot) xy (mmf.math.interp.Options attribute)

Y

y_x() (mmf.math.integrate.integrate_1d.quadrature.ExpDecay method) (mmf.math.integrate.integrate_1d.quadrature.PowerDecay method) Yamaguchi (class in mmf.physics.potentials.separable)

yes_no() (in module mmf.utils.script) yticks() (in module mmf.utils.mmf_plot)