Malaria Theory
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About
Introduction
Four Basic Malaria Models
6. Using SimBA
Introduction
The Parasite Life Cycle
In a Mosquito
In a Human
Quantitative Logic
The SIS Model
Four Basic Malaria Models
1. A Discrete Time System (DTS)
2. A Stochastic DTS
3. Ordinary Differential Equations
4. Asynchronous Stochastic Process
5. Comparing Models
6. Using SimBA
A Ross-Macdonald Model
Vectorial Capacity
Dynamical Systems
Qualitative Analysis
Model Building
Theory for Malaria Analysts
AGENTS
Human Malaria Epidemiology
Exposure
Heterogeneous Biting
Environmental Heterogeneity
Tracking Variables
Infection
Superinfection & Queuing
A Hybrid Model
A Superinfection Solution
Age of Infection (AoI)
Stage of Infection (SoI)
Tracking Infection
Disease
Treatment & Chemprotection
Infectiousness
Diagnostics & Detection
Immunity
Stage Structured Immunity
Pre-Erythrocytic Immunity
Transmission Blocking Immunity
Vaccines
Stratification
Simulating Malaria
Pf
-LOME
probabilistic.qmd
PDG Malaria Models
SIPd
Parasite Transmission
Blood Feeding & Transmission
Vectorial Capacity: A Framework
Human Transmitting Capacity
Heterogeneous Transmission
Reproductive Numbers
Mosquito Ecology
Search & Resource Availability
Resource Availability
Behavioral State Models
Mosquito Demography
Egg Laying
Sugar Feeding
Forcing
Aquatic Ecology
Larval Dynamics
Dynamics of Aquatic Habitats
Malaria Control
Vector Control
Indoor Residual Spraying
Bed Nets
Larval Source Management
Care Seeking
Malaria Therapeutics
Mass Treatment
SMC
REALISM
Space
Spatial Concepts
Mosquito Dispersal
Human Mobility
Time Spent at Risk
Travel Malaria
Vectorial Capacity Matrix
The HTC Matrix
Malaria Connectivity
Spatial Thresholds
Microsimulation
Mosquito Microecology
Microepidemiology
Forcing
Weather
Extrinsic Incubation Period
Seasonality
Index of Seasonal Dispersion (IoSD)
Seasonal Exposure
Seasonal Thresholds
Age and Time
Aging & Cohorts
Age Specific Mortality
Computing Thresholds
Stability Analysis
A Generation: In the Mosquitoes
One Parasite Generation
Across Generations
Perturbations
POLICY
Scaling
Scaling: EIR-FoI
foi_pr.qmd
Scaling: Mosquitoes & Transmission
Malaria Landscapes & Targeting
Malaria Populations
Malaria Foci
Area Effects
Tailoring Vector Control
Tailoring Vector Control
Evolution
Malaria Parasites
Parasite Genetics
Drug Resistance
Insecticide Resistance
The Burden of Malaria
Severe Malaria
Malaria & Anemia
Pregnancy & Malaria
Nutrition & Malaria
Malaria Elimination
eliminatinon_timelines.qmd
Is Elimination Sticky?
Stuttering Chains
Introduction
Four Basic Malaria Models
6. Using SimBA
6. Using SimBA
A Primer, Part 6
Author
Affiliation
David L Smith
University of Washington
