2022 SISMID Module Class Website: Spatial Statistics for Epidemiology and Public Health

Instructors:

• Jon Wakefield
• Lance Waller

Lecture Material

• Schedule: here
  
  
• Lecture 1 Part 1: here
• Lecture 1 Part 2 (pdf): here
• Lecture 1 Part 2 (Rmd): here
  
  
• Lecture 2 Part 1: here
• Lecture 2 Part 2 (pdf): here
• Lecture 2 Part 2 (Rmd): here
  
  
• Lecture 3 Part 1: here
• Lecture 3 Part 2 (pdf): here
• Lecture 3 Part 2 (Rmd): here
  
  
• Lecture 4 Part 1: here
• Lecture 4 Part 2 (pdf): here
• Lecture 4 Part 2 (Rmd): here
  
  
• Lecture 5 Part 1: here
• Lecture 5 Part 2 (pdf): here
• Lecture 5 Part 2 (Rmd): here
  
  
• Lecture 6 Part 1: here
• Lecture 6 Part 2 (pdf): here
• Lecture 6 Part 2 (Rmd): here
  
  
• Lecture 7: Part 1: here
• Lecture 7 Part 2 (pdf) CSR: here
• Lecture 7 Part 2 (Rmd) CSR: here
• Lecture 7 Part 3 (pdf) Intensities: here
• Lecture 7 Part 3 (Rmd) Intensities: here
• Lecture 7 Part 4 (pdf) K-functions: here
• Lecture 7 Part 4 (Rmd) K-functions: here
  
  
• Lecture 8 Part 1: here
• Lecture 8 Part 2 (pdf): here
• Lecture 8 Part 2 (Rmd): here
  
  
• Lecture 9 Part 1: here
• No R notes for this material.
  
  
• Lecture 10 Part 1: here
• Lecture 10 Part 2 (pdf): here
• Lecture 10 Part 2 (Rmd): here

Datasets and R Resources

• Waller and Gotway Book Website: here
• Graph file for Scotland: here
• Shapefile for Germany Measles Data: here
• R Code for Empirical Bayes Summaries and Ohio Map: here
• INLA Homepage: here
• Lecture 3 Material: dental.INTENSITIES.R, dental.reduced.dat,dentalKrl.r,mypoly.dat
• HoustonENAR2012final.dbf: here
• HoustonENAR2012final.shx: here
• HoustonENAR2012final.shp: here
• HoustonENAR2012final.sbn: here
• HoustonENAR2012final.sbx: here
• HoustonGWR.SlipperySlopes.SISMID2020.pdf here
• HoustonGWR.SlipperySlopes.SISMID2020.Rmd here
• HoustonGWR.SlipperySlopes.R here
• Ohio Data and Description: ohio.dat, ohio.readme
• North Carolina Graph File: NC.graph
• R Code for North Carolina SIDS Data Analysis Code
• wacounty.shp file for Lecture 1 example wacounty.shp
• wacounty.shx file for Lecture 1 example wacounty.shx
• wacounty.dbf file for Lecture 1 example wacounty.dbf
• gadm36_MWI_1.shp file for Lecture 1 example gadm36_MWI_1.shp
• gadm36_MWI_1.shx file for Lecture 1 example gadm36_MWI_1.shx
• gadm36_MWI_1.dbf file for Lecture 1 example gadm36_MWI_1.dbf
• watract.shp file for Lecture 1 example watract.shp
• watract.shx file for Lecture 1 example watract.shx
• watract.dbf file for Lecture 1 example watract.dbf
• binom.csv file for Lecture 1 example binom.csv
• direct.csv file for Lecture 1 example direct.csv
• urban_prop_sample_df.csv file for Lecture 1 example urban_prop_sample_df.csv
• Lecture 3 data: myrtles.d
• Lecture 3 data: myrtles_diseased.d
• Lecture 3 data: myrtles_healthy.d
• Lecture 3 R code: dental.Kfunctions.SISMID2020.r
• Lecture 3 R code: dental.intensities.SISMID2020.R
• Lecture 3 R data: dental.reduced.dat
• Lecture 3 R data: mypoly.dat
• Lance 1 file for Lecture 8 example File 1
• Lance 2 file for Lecture 8 example File 2
• Lance 3 file for Lecture 8 example File 3
• scot.shp file scot.shp
• scot.shx file scot.shx
• scot.dbf file scot.dbf
• NY WinBUGS Code myleuk.odc
• Asthma spbdry.dbf
• Asthma spbdry.shp
• Asthma spbdry.shx
• Asthma sproads.dbf
• Asthma sproads.shp
• Asthma sproads.shx
• Asthma spsrc.dbf
• Asthma spsrc.shp
• Asthma spsrc.shx
• Asthma spasthma.dbf
• Asthma spasthma.shp
• Asthma spasthma.shx
• Point Source Example dems.txt
• Foreclosures foreclosures.dbf
• Foreclosures foreclosures.shp
• Foreclosures foreclosures.shx

Papers and Technical Reports

• SpatialEpi Package Vignette: here
• Wakefield and Albert (2013): here
• Waller and Carlin (2010): here
• Waller et al (2006) Geography of Power: here
• Roger Bivand Technical Report on Spatial Analysis of SIDS data: here
• Hills, Plummer and Carstensen (2006) R Intro: here

Useful Links

• Spatial R Packages Spatial Task View: Analysis of Spatial Data

Daniel Simpson's INLA Spatial Course

• R-INLA: here
• Spatial: here
• LGCPs: here
• Grouped Models: here
• SPDEs: here