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|PROCEEDINGS and CHAPTERS
- Chemical master equation. (with Ge, H.) In Springer Encyclopedia of Systems Biology (W. Dubitzky, O. Wolkenhauer, K.-H. Cho & H. Yokota, eds.) Springer, 396-399 (2013).
- Stochastic processes, Fokker-Planck equation. (with Ge, H.) In
Springer Encyclopedia of Systems Biology (W. Dubitzky, O. Wolkenhauer, K.-H. Cho & H. Yokota, eds.) Springer, 2000-2004 (2013).
stochastic processes, coupled diffusions and
systems biochemistry. (with Shi, P.-Z.) In
Frontiers in Computational
and Systems Biology (Computational Biology Series, Vol. 15,
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Springer-Verlag, 175-201 (2010).
- Chemical fluxes in cellular steady states measured by
fluorescence correlation spectroscopy. (with Elson, E.L.) In
Molecule Spectroscopy in Chemistry, Physics and Biology
(Nobel Symposium: Springer Series in Chemical Physics,
Vol. 96, A. Gräslund, R. Rigler & J. Widengren, eds.)
Springer, 119-137 (2009).
modeling of cardiac cellular energetics. (with Bassingthwaighte,
J.B., Chizeck, H.J. & Atlas, L.E.) In The Communicative Cardiac Cell
(Annual of the New York Academy of Science, Vol. 1047, S. Sideman,
R. Beyar & A. Landesberg, eds.) 395-426 (2005).
- Constraint-based modeling of metabolomic systems. (with Beard, D.A.)
In Encyclopedia of Genetics, Genomics, Proteomics, and Bioinformatics,
Vol. 3: Proteomics (M. Dunn, ed.) Sec. 8: Systems Biology
(R.L. Winslow, ed.) John Wiley & Sons, (2005).
- Stoichiometric foundation of large-scale biochemical system
analysis. (with Beard, D.A. & Bassingthwaighte, J.B.) In
Modelling in Molecular Biology (Natural Computing
Series, G. Ciobanu & G. Rozenberg, eds.) Springer, 1-19 (2004).
- Mathematical Biology. In Dictionary of Applied Math for Engineers and Scientists
- A Volume in the Comprehensive Dictionary of Mathematics (E. Previato ed.) CRC Press (2003).
- Fractional Brownian motion and fractional Gaussian noise.
In Processes with Long-Range
Correlations: Theory and Applications (Lecture Notes in Physics,
Vol. 621, G. Rangarajan & M.Z. Ding, eds.) Springer, 22-33 (2003).
- Strain-dependent fluorescence correlation spectroscopy:
proposing a new measurement for conformational fluctuations of
biological macromolecules. (with Elson, E.L.) In
Fluorescence Correlation Spectroscopy: Theory and Applications
(Springer Series in Chemical Physics, Vol. 65, R. Rigler & E.L. Elson eds.)
Springer, 65-83 (2001).
cardiome project: An integrated view of cardiac
metabolism and regional mechanical function. (with Bassingthwaighte,
J.B. & Li, Z.) In Oxygen Transport to Tissue,
Vol. 21, (Advances in Experimental Medicine and Biology, Vol. 471,
A. Eke & D.T. Delpy Eds.) Kluwer Academic/Plenum Publishers,
- Measurements of molecular transport in small systems. (with Elson,
E.L.) In Cell Biology (AMS Lectures on Mathematics in the Life Science,
Vol. 24, B. Goldstein & C. Wofsy eds.) American Mathematical Society,
- Characterization of confocal laser based microscope - an optical
sectioning microscopy approach. (with Elson, E.L.) In Optical Microscopy for
Biology (B. Herman & K.A. Jacobson eds.) Alan R. Liss, 119-130 (1990).
of fluorescence correlation spectroscopy and photobleaching
recovery in terms of molecular interactions. (with Elson, E.L.)
In Quantitative Fluorescence Microscopy - Imaging and Spectroscopy
(Methods in Cell Biology, Vol. 30, D.L. Taylor & Y.-L. Wang eds.)
Academic Press, 307-332 (1989).
- Fluorescence microscopic analysis of molecular interactions in
3-dimensional samples by means of fluorescence correlation spectroscopy
and photobleaching recovery. (with Elson, E.L.) Proceedings of
Electron Microscopy Society of America, Vol. 46, 38-39 (1988).
- 3-D fluorescence correlation spectroscopy in bulk solution.
(with Elson, E.L.) Proceedings of the Society of Photo-Optical
Instrumentation Engineers, Vol. 909, 352-359 (1988).
- Stochastic Chemical Kinetics: Theory
and (Mostly) Systems Biology Applications by
Péter Érdi and Gárbo Lente, SIAM Review,
57, 475-477 (2015).
- Random Perturbations of Dynamical Systems by
Mark I. Freidlin and Alexander D. Wentzell, SIAM Review,
55, 569-574 (2013).
- Theory and Applications of Stochastic Processes:
An Analytical Approach by Zeev Schuss, SIAM Review, 53,
- Molecular Modeling and Simulation: An Interdisciplinary
Guide by Tamar Schlick, SIAM Review, 47, 843-845 (2005).
- Mathematical Physiology by James Keener and James Sneyd,
SIAM Review, 46, 587-590 (2004).
- Computational Molecular Biology: An Algorithmic Approach
by Pavel A. Pevzner, SIAM Review, 43, 733-735(2001).
An Introduction to Chaos in Nonequilibrium Statistical Mechanics by J. R. Dorfman, Bulletin of Mathematical Biology, 63,
- Stochastic Processes in Quantum Physics by Masao Nagasawa,
SIAM Review, 43, 218-220 (2001).
- A Polymer "Sensibility": On the Occasion of My Grandfather's 100th
Birthday. Dong Hua Da Xue Bao, 200, October, 17 (2007).
- Bruno H. Zimm
(1920-2005) (with E.L. Elson and J.M. Schurr) Biophysical Chemistry, 121, 155-156 (2006).
- Mark Greener: Enzymology's New Frontiers.
The Scientist, 18, 16-20 (2004).
- John Schellman
and Biophysical Chemistry. University of Oregon, Chemistry Department
News Letters,12-13 (2004).
Chemistry of Proteins and Nucleic Acids: A Festschrift For John A. Schellman. (with J. Hofrichter and R.L. Baldwin) Biophysical Chemistry, 101,