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Journal Articles

  1. P. K. Crane, C. Groot, R. Ossenkoppele, S. Mukherjee, S-E. Choi, M. Lee, P. Scollard, L. E. Gibbons, R. E. Sanders, E. Trittschuh, A. J. Saykin, J. Mez, V. Dore, C. L. MacDonald, H. Sohi, E. Iannopollo, K. Garcia, for the Alzheimer's Disease Neuroimaging Initiative, S. Risacher (2023): ‘‘Cognitively-defined Alzheimer's dementia subgroups have distinct atrophy patterns,’’ Alzheimer’s & Dementia, doi: 10.1002/alz.13567.

  2. M. Kang, T. F. A. Ang, S. A. Devine, R. Sherva, S. Mukherjee, E. H. Trittschuh, L. E. Gibbons, Ph. Scollard, M. Lee, S-E. Choi, B. Klinedinst, C. Nakano, L. C. Dumitrescu, A. Durant, T. J. Hohman, M. L. Cuccaro, A. J. Saykin, W. A. Kukull, D. A. Bennett, L-S. Wang, R. P. Mayeux, J. L. Haines, M. A. Pericak-Vance, G. D. Schellenberg, P. K. Crane, R. Au, K. L. Lunetta, J. B. Mez, L. A. Farrer (2023): ‘‘A genome-wide search for pleiotropy in more than 100,000 harmonized longitudinal cognitive domain scores.’’ Molecular Degeneration, 18 (1):40. doi: 10.1186/s13024-023-00633-4.

  3. C. B. Haas, K. M. Jordahl, R. M. Nance, B. M. Whitney, L. Wang, J. A. C. Delaney, S. Ruderman, T. Jia, W. J. Lee, W. C. Mathews, M. S. Saag, S. A. Lee, S. Napravnik, J. M. Jacobson, G. Chander, E. M. McCall, R. D. Moore, K. H. Mayer, S. Mukherjee, P. K. Crane, H. Crane, I. Peter, S. Lindstrom (2023): ‘‘Assessing the association between known genetic variants and substance use in a multi-ancestry population of people with HIV in the United States,’’ PLoS One, 18 (10):e0292068.

  4. J. M. Eissman, D. B. Archer , S. Mukherjee, M. Lee, S-E. Choi, P. Scollard, E. Trittschuh, J. Mez, W. S. Bush, B. W.. Kunkle, A. C. Naj, K. A. Gifford, The Alzheimer's Disease Neuroimaging Initiative (ADNI); Alzheimer's Disease Genetics Consortium (ADGC); The Alzheimer's Disease Sequencing Project (ADSP); M. L. Cuccaro, C. Cruchaga, M. A. Pericak-Vance, L. A. Farrer, L-S. Wang, J. L. Haines, A. L. Jefferson, W. A. Kukull, C. D. Keene, A. J. Saykin, P. M. Thompson, E. R. Martin, D. A. Bennett, L. L. Barnes, J. A. Schneider, P. K. Crane, T. J. Hohman, and Logan Dumitrescu (2023): ‘‘Sex-specific genetic architecture of late-life memory performance.’’ Alzheimer’s & Dementia, 20 (2): 1250 - 1267.

  5. D. B. Archer, J. M. Eissman, S. Mukherjee, M. L. Lee, S-E. Choi, P. Scollard, E. Trittschuh, J. Mez, W. S. Bush, B. W.. Kunkle, A. C. Naj K. A. Gifford, The Alzheimer's Disease Neuroimaging Initiative (ADNI), Alzheimer's Disease Genetics Consortium (ADGC), The Alzheimer’s Disease Sequencing Project (ADSP), M. A. Pericak-Vance, L. A. Farrer, L-S. Wang, G. D. Schellenberg, R. P. Mayeux, J. L. Haines, A. L. Jefferson, W. A. Kukull, C. D. Keene, A. J. Saykin, P. M. Thompson, E. R. Martin, D. A. Bennett, L. L. Barnes, J. A. Schneider, P. K. Crane, L. Dumitrescu, T. J. Hohman (2023): ‘‘Longitudinal change in memory performance as a strong endophenotype for Alzheimer's disease,’’ Alzheimer’s & Dementia, 20 (2): 1268 - 1283.

  6. S. Walters, A. G. Contreras, J. M. Eissman, S. Mukherjee, M. Lee, S-E. Choi, P. Scollard, E. Trittschuh, J. Mez, W. S. Bush, B. W.. Kunkle, A. C. Naj, A. Peterson, K. A. Gifford, The Alzheimer's Disease Neuroimaging Initiative (ADNI), Alzheimer's Disease Genetics Consortium (ADGC), The Alzheimer's Disease Sequencing Project (ADSP), M. L. Cuccaro, C. Cruchaga, M. A. Pericak-Vance, L. A. Farrer, L-S. Wang, G. D. Schellenberg, J. L. Haines, A. L. Jefferson, W. A. Kukull, C. D. Keene, A. J. Saykin, P. M. Thompson, E. R. Martin, D. A. Bennett, L. L. Barnes, J. A. Schneider, P. K. Crane, T. J. Hohman, and Logan Dumitrescu (2022): ‘‘Associations of Sex, Race, and Apolipoprotein E Alleles With Multiple Domains of Cognition Among Older Adults,’’ JAMA Neurology, 80 (9): 929 - 939.

  7. P. Scollard, M. L. Lee, S. Mukherjee, E. H. Trittschuh, R. E. Sanders, L. E. Gibbons, P. Joshi, S. Devine, R. Au, K. Dams-O'Connor, A. J. Saykin, S. Seshadri, A. Beiser, H. J. Aparicio, J. Salinas, M. M. Gonzales, M. P. Pase, S. Ghosh, R. Finney, J. Mez and P. K. Crane (2023): ‘‘Ceiling effects and differential measurement precision across calibrated cognitive scores in the Framingham study,’’ Neuropsychology, 37 (4): 383 - 397.

  8. P. K. Crane, S-E. Choi, M. Lee, R. E. Sanders, E. Trittschuh, J. Mez, A. J. Saykin, L. E. Gibbons, C. Wang, D. Mungas, R. Zhu, N. S. Foldi, M. Lamar, R. Jutten, S. A. M. Sikkes, E. Grandoit, L. A. .Rabin, R. N. Jones, D. Tommet, for the Alzheimer's Disease Neuroimaging Initiative, and S. Mukherjee (2023): ‘‘Measurement precision across cognitive domains in the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset,’’ Neuropsychology, 37 (4): 373 - 382.

  9. P. Scaduto, J. C. Lauterborn, C. D. Cox, A. Fracassi, T. Zeppillo, B. A. Gutierrez, C. D. Keene, P. K. Crane, S. Mukherjee, W. K. Russell, G. Taglialatela, A. Limon (2023): ‘‘Functional excitatory to inhibitory synaptic imbalance and loss of cognitive performance in people with Alzheimer's disease neuropathologic change,’’ Acta Neuropathologica, 145 (3): 303 - 324.

  10. C. E. Shaaban, D. L. Tudorascu, M. M. Glymour, A. D. Cohen, R. C. Thurston, H. M. Snyder, T. J. Hohman, S. Mukherjee, L. Yu, B. E. Snitz (2022)" ‘‘A guide for researchers seeking training in retrospective data harmonization for population neuroscience studies of Alzheimer's disease and related dementias,’’ Frontiers in Neuroimaging, 1:978350; doi: 10.3389/fnimg.2022.978350.

  11. S. Mukherjee, S-E. Choi, M. L. Lee, P. Scollard, E, H. Trittschuh, J. Mez, A. J. Saykin, L. E. Gibbons, R. E. Sanders, A. F. Zaman, M. A. Teylan, W. A. Kukull, L. L. Barnes, D. A. Bennett, A. Z. Lacroix, E. B. Larson, M. Cuccaro, S. Mercado, L. Dumitrescu, T. J. Hohman, P. K. Crane (2022): ‘‘Cognitive domain harmonization and cocalibration in studies of older adults,’’ Neuropsychology, 37 (4): 409 - 423.

  12. O. L. Hampton, S. Mukherjee, M. J. Properzi, A. P. Schultz, P. K. Crane, L. E. Gibbons, T. J. Hohman, P. Maruff, Y. Y. Lim, R. E. Amariglio, K. V. Papp, K. A. Johnson, D. M. Rentz, R. A. Sperling, R. F. Buckley (2022): ‘‘Harmonizing the preclinical Alzheimer cognitive composite for multicohort studies,’’ Neuropsychology, 37 (4): 436 - 449.

  13. J. M. Eissman, L. Dumitrescu, E. R. Mahoney, A. N. Smith, S. Mukherjee, M. L. Lee, P. Scollard, S-E. Choi, W. S. Bush, C. D. Engelman, Q. Lu, D. W. Fardo, E. H. Trittschuh, J. Mez, C. C. Kaczorowski, H. H. Saucedo, K. F. Widaman, R. F. Buckley, M. J. Properzi, E. C. Mormino, H-S. Yang, T. M. Harrison, T. Hedden, K. Nho, S. J. Andrews, D. Tommet, N. Hadad, R E. Sanders, D. M. Ruderfer, K. A. Gifford, X. Zhong, N. S. Raghavan, B. N. Vardarajan, Alzheimer's Disease Neuroimaging Initiative (ADNI), Alzheimer's Disease Genetics Consortium (ADGC), A4 Study Team, M. A. Pericak-Vance, L. A. Farrer, L. S. Wang, C. Cruchaga, G. D. Schellenberg, N. J. Cox, J. L. Haines, C. D. Keene, A. J. Saykin, E. B. Larson, R. A. Sperling, R. Mayeux, M. L. Cuccaro, D. A. Bennett, J. A. Schneider, P. K. Crane, A. L. Jefferson, T. J. Hohman (2022): ‘‘Sex differences in the genetic architecture of cognitive resilience to Alzheimer's disease,’’ Brain, 145: 2541 - 2554.

  14. C. Bellenguez, F. Kucukali, I. E. Jansen, L. Kleineidam, …, S. Mukherjee, …, A. Ruiz, A. Ramirez, J-C. Lambert (2022): ‘‘New insights into the genetic etiology of Alzheimer's disease and related dementias,’’ Nature Genetics, 54: 412 - 436.

  15. A. J. Dugan, P. T. Nelson, Y. Katsumata, L. M. P. Shade, M. A. Teylan, K. L. Boehme, S. Mukherjee, J. S. K. Kauwe, T. J. Hohman, J. A. Schneider, , Alzheimer's Disease Genetics Consortium, D. W. Fardo (2021): ‘‘Association between WWOX/MAF variants and dementia-related neuropathologic endophenotypes,’’ Neurobiology of Aging, 111: 95 - 106.

  16. L. M. P. Shade, Y. Katsumata, T. J. Hohman, K. Nho, A. J. Saykin, S. Mukherjee, K. L. Boehme, J. S. K. Kauwe, J. A. Schneider, P. T. Nelson, D. W. Fardo, Alzheimer's Disease Genetics Consortium, for the Alzheimer's Disease Neuroimaging Initiative (2021): ‘‘Genome-Wide Association Study of Brain Arteriolosclerosis,’’ Journal of Cerebral Blood Flow and Metabolism, 42 (8):1437 - 1450.

  17. A. J. Dugan, P. T. Nelson, Y. Katsumata, L. M. P. Shade, K. L. Boehme, M. A. Teylan, M. D. Cykowski, S. Mukherjee, J. S. K. Kauwe, T. J. Hohman, J. A. Schneider, D. W.Fardo (2021): ‘‘Analysis of genes (TMEM106B, GRN, ABCC9, KCNMB2, and APOE) implicated in risk for LATE-NC and hippocampal sclerosis provides pathogenetic insights: a retrospective genetic association study,’’ Acta Neuropathologica Communications, 9 (1):152.

  18. M. Uretsky, L. E. Gibbons, S. Mukherjee, E. H. Trittschuh, D. W. Fardo, P. A. Boyle, C. D. Keene, A. J. Saykin, P. K. Crane, J. A. Schneider, J. Mez (2021): ‘‘Longitudinal cognitive performance of Alzheimer's disease neuropathological subtypes,’’ Alzheimer's & Dementia: Translational Research & Clinical Interventions, 7 (1):e12201.

  19. C. Groot, S. L Risacher, J Q. A. Chen, E. Dicks, A. J. Saykin, C. L. Mac Donald, J. Mez, E. H. Trittschuh, S. Mukherjee, F. Barkhof, P. Scheltens, W. M. van Der Flier, R. Ossenkoppele, P. K. Crane, Alzheimer's disease neuroimaging initiative (ADNI) (2021): ‘‘Differential trajectories of hypometabolism across cognitively-defined Alzheimer's disease subgroups,’’ NeuroImage: Clinical, 31:102725.

  20. C. Groot, M. J. Grothe, S. Mukherjee, I. Jelistratova, I. Jansen, A. C. van Loenhoud, S. L. Risacher, A. J. Saykin, C. L. Mac Donald, J. Mez, E. H. Trittschuh, G. Gryglewski, R. Lanzenberger, Y. A. L. Pijnenburg, F. Barkhof, P. Scheltens, W. M. van der Flier, P. K. Crane, R. Ossenkoppele (2021): ‘‘Differential patterns of gray matter volumes and associated gene expression profiles in cognitively-defined Alzheimer's disease subgroups,’’ NeuroImage: Clinical, 30:102660.

  21. B. W. Kunkle, M. Schmidt, H-U. Klein, A. C. Naj, K.L. Hamilton-Nelson, …, S. Mukherjee, …, J. P. Vonsattel, S. Weintraub, K. A. Hall, K. C. Wilhelmsen (2021): ‘‘Novel Alzheimer disease risk loci and pathways in African American individuals using the African genome resources panel: a meta-analysis,’’ JAMA Neurology; 78 (1):102 - 113.

  22. S-E. Choi, S. Mukherjee, L. E. Gibbons, R. E. Sanders, R. N. Jones, D. Tommett, J. Mez, E. H. Trittschuh, A. J. Saykin, M. Lamar, L. Rabin, N. S. Foldi, S. Sikkes, R. J. Jutten, E. Grandoit, C. L. MacDonald, PhD, S. Risacher, C. Groot, R. Ossenkoppele, for the Alzheimer's Disease Neuroimaging Initiative, and P. K. Crane (2020): ‘‘Development and validation of language and visuospatial composite scores in ADNI,’’ Alzheimer's & Dementia: Translational Research & Clinical Intervention, 6 (1): e12072.

  23. L. C. Kobayashi, A. L. Gross, L. E. Gibbons, D. Tommet, R. E. Sanders, S-E. Choi, S. Mukherjee, M. M. Glymour, J. J. Manly, L. F. Berkman, P. K. Crane, D. M. Mungas, R. N. Jones (2020): ‘‘You say tomato, I say radish: can brief cognitive assessments in the US Health Retirement Study be harmonized with its International Partner Studies?,’’ The Journals of Gerontology: Series B, 76 (9):1767 - 1776.

  24. Y. Katsumata, E. L. Abner, S. Karanth, M. A. Teylan, C. N. Mock, M. D. Cykowski, E. B. Lee, K. L. Boehme, S. Mukherjee, J. SK. Kauwe, R. J. Kryscio, F. A. Schmitt, D. W. Fardo, P. T. Nelson (2020): ‘‘Distinct clinicopathologic clusters of persons with TDP-43 proteinopathy,’’ Acta Neuropathologica; doi: 10.1007s00401-020-02211-0.Y. Katsumata, E. L. Abner, S. Karanth, M. A. Teylan, C. N. Mock, M. D. Cykowski, E. B. Lee, K. L. Boehme, textbf{S. Mukherjee}, J. SK. Kauwe, R. J. Kryscio, F. A. Schmitt, D. W. Fardo, P. T. Nelson (2020): ‘‘Distinct clinicopathologic clusters of persons with TDP-43 proteinopathy,’’ Acta Neuropathologica/, 140 (5): 659 – 674.

  25. R. Sherva, A. Gross, S. Mukherjee, R. Koesterer, P. Amouyel, C. Bellenguez, C. Dufouil, D. A. Bennett, L. Chibnik, C. Cruchaga, J. del-Aguila, L. A. Farrer, R. Mayeux, L. Munsie, A. Winslow, S. Newhouse, A. J. Saykin, J. SK. Kauwe, Alzheimer's Disease Genetics Consortium, P. K. Crane, R. C. Green (2020): ‘‘Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways,’’ Alzheimer's & Dementia, 16 (8): 1134 - 1145.R. Sherva, A. Gross, textbf{S. Mukherjee}, R. Koesterer, P. Amouyel, C. Bellenguez, C. Dufouil, D. A. Bennett, L. Chibnik, C. Cruchaga, J. del-Aguila, L. A. Farrer, R. Mayeux, L. Munsie, A. Winslow, S. Newhouse, A. J. Saykin, J. SK. Kauwe, Alzheimer's Disease Genetics Consortium, P. K. Crane, R. C. Green (2020): ‘‘Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways,’’ Alzheimer's & Dementia, 16 (8): 1134 - 1145.

  26. L. Dumitrescu, E. R. Mahoney, S. Mukherjee, M. L. Lee, W. S. Bush, C. D. Engelman, Q. Lu, D. W. Fardo, E. H. Trittschuh, J. Mez, C. Kaczorowski, H. Hernandez Saucedo, K. F. Widaman, R. Buckley, M. Properzi, E. Mormino, H. Yang, T. Harrison, T. Hedden, K. Nho, S. J. Andrews, D. Tommet, N. Hadad, R. E. Sanders, D. M. Ruderfer, K. A. Gifford, A. M. Moore, F. Cambroner, X. Zhong, N. S. Raghavan, B. Vardarajan, The Alzheimer's Disease Neuroimaging Initiative (ADNI), Alzheimer's Disease Genetics Consortium (ADGC), A4 Study Team, M. A. Pericak-Vance, L. A. Farrer, L-S. Wang, C. Cruchaga, G. Schellenberg, N. J. Cox, J. L. Haines, C. D. Keene, A. J. Saykin, E. B. Larson, R. A. Sperling, R. Mayeux, D. A. Bennett, J. A. Schneider, P. K. Crane, A. L. Jefferson , T. J. Hohman (2020): ‘‘Genetic Variants and Functional Pathways Associated with Resilience to Alzheimer's Disease,’’ Brain, 143 (8): 2561 - 2575.

  27. N. Milind, C. Preuss, A. Haber, G. Ananda, S. Mukherjee, C. John, S. Shapley, B. Logsdon, P. K. Crane, G. W. Carter (2020): ‘‘Transcriptome stratification of late-onset Alzheimer's cases reveals novel genetic modifiers of disease pathology,’’ PLoS Genetics, 16 (6): e1008775.

  28. E. Vance, J. D. Gonzalez Murcia, J. B. Miller, Alzheimer's Disease Genetics Consortium (ADGC), L. Staley, P. K. Crane, S. Mukherjee, J. S. K. Kauwe (2020): ‘‘Failure to detect synergy between variants in transferrin and hemochromatosis and Alzheimer's disease in large cohort,’’ Neurobiology of Aging; doi: 10.1016/j.neurobiolaging.2020.01.013.

  29. S. L. Strickland, J. S. Reddy, M. Allen M, A. N’Songo, J. D. Burgess, M. M. Corda, T. Ballard, X. Wang, M. M. Carrasquillo, J. M. Biernacka, G. D. Jenkins, S. Mukherjee, K. Boehme, P. K. Crane, J. S. K. Kauwe, the Alzheimer's Disease Genetics Consortium, N. Ertekin-Taner (2020): ‘‘MAPT haplotype stratified GWAS reveals differential association for AD risk variants,’’ Alzheimer's & Dementia, 16 (7): 1983 - 1002.

  30. E. E. Blue, A. RVR. Horimoto, S. Mukherjee, E. M. Wijsman, T. A. Thornton (2019): ‘‘Local ancestry at APOE modifies Alzheimer's disease risk in Caribbean Hispanics,’’ Alzheimer's & Dementia, 15 (12): 1524 - 1532.

  31. L. Dumitrescu, L. L. Barnes, M. Thambisetty, G. Beecham, B. Kunkle, W. S. Bush, K. A. Gifford, L. B. Chibnik, S. Mukherjee, P. L. De Jager, W. Kukull, P. K. Crane, S. M. Resnick, C. D. Keene, T. J. Montine, G. D. Schellenberg, Y. Deming, M. J. Chao, M. Huentelman, E. R. Martin, K. Hamilton-Nelson, L. M. Shaw, J. Q. Trojanowski, E. R. Peskind, C. Cruchaga, M. A. Pericak-Vance, A. M. Goate, N. J. Cox, J. L. Haines, H. Zetterberg, K. Blennow, E. B. Larson, S. C. Johnson, M. Albert, for the Alzheimer's Disease Genetics Consortium and the Alzheimer's Disease Neuroimaging Initiative, D. A. Bennett, J. A. Schneider, A. L. Jefferson, T. J. Hohman (2019): ‘‘Sex differences in the genetic predictors of Alzheimer’s pathology,’’ Brain, 142 (9):2581 - 2589.

  32. J. Bauman, L. E. Gibbons, M. Moore, S. Mukherjee, S. M. McCurry, W. McCormick, J. D. Bowen, E. Trittschuh, M. M. Glymour, J. Mez, A. J. Saykin, K. Dams-O'Conner, D. A. Bennet, E. B. Larson, P. K. Crane, for the Executive Prominent AD (EPAD) Investigators (2019): ‘‘Associations between depression, traumatic brain injury, and cognitively-defined late-onset Alzheimer's disease subgroups,’’ Journal of Alzheimer's Disease, 70 (2):611 - 619.

  33. B. W. Kunkle, B. Grenier-Boley, R. Sims, J. C. Bis, A. C. Naj, A. Boland, M. Vronskaya, S. J. van der Lee, A. Amlie-Wolf, C. Bellenguez, A. Frizatti, V. Chouraki, E. R. Martin, K. Sleegers, N. Badarinarayan, J. Jakobsdottir, K. L. Hamilton-Nelson, R. Aloso, R. Raybould, Y. Chen, A. B. Kuzma, M. Hiltunen, T. Morgan, S. Ahmad, B. N. Vardarajan, J. Epelbaum, P. Hoffmann, M. Boada, G. W. Beecham, J. G. Garnier, D. Harold, A. L. Fitzpatrick, O. Valladares, M. L. Moutet, A. Gerrish, A. V. Smith, L. Qu, D. Bacq, N. Denning, X. Jian, Y. Zhao, M. D. Zompo, N. C. Fox, M. L. Grove, S. H. Choi, I. Mateo, J. T. Hughes, H. H. Adams, J. Malamon, F. S. Garcia, Y. Patel, J. A. Brody, B. Dombroski, M. C. D. Naranjo , M. Daniilidou, G. Eiriksdottir G, S. Mukherjee, D. Wallon, … G. D. Schellenberg, J. C. Lambert, M. A. Pericak-Vance (2019): ‘‘Meta-analysis of genetic association with diagnosed Alzheimer's disease identifies novel risk loci and implicates Abeta, Tau, immunity and lipid processing,’’ Nature Genetics, 51: 414 - 430.

  34. Y. Hu, M. Li, Q. Lu, H. Weng, J. Wang, S. M. Zekavat, Z. Yu, B. Li, S. Muchnik, Y. Shi, B. W. Kunkle, S. Mukherjee, P. Natarajan, A. Naj, A. Kuzma, Y. Zhao, P. K. Crane, H. Zhao, Alzheimer's Disease Genetics Consortium (2019): ‘‘A statistical framework for cross-tissue transcriptome-wide association analysis,’’ Nature Genetics, 51: 568 - 576.

  35. S. Mukherjee, J. Mez, E. Trittschuh, A. J. Saykin, L. E. Gibbons, D. W. Fardo, M. Wessels, J. Bauman, M. Moore, S-E. Choi, A. L. Gross, J. Rich, D. K. N. Louden, R. E. Sanders, T. J. Grabowski, T. D. Bird, S. M. McCurry, B. E. Snitz, M. I. Kamboh, O. L. Lopez, P. L. De Jager, D. A. Bennett, C. D. Keene, E. B. Larson, for the EPAD Study Group and Investigators from ACT, ROS, MAP, ADNI, and the University of Pittsburgh ADRC, and P. K. Crane (2018): ‘‘Genetic data support the biological coherence of cognitively-defined late-onset Alzheimer's disease subgroups,’’ Molecular Psychiatry, DOI: 10.1038/s41380-018-0298-8.

  36. Y. Deming, L. Dumitrescu, L. L. Barnes, M. Thambisetty, B Kunkle, K. A. Gifford, W. S. Bush, L. B. Chibnik, S. Mukherjee, P. L. De Jager, W. Kukull, M. Huentelman, P. K. Crane, S. M. Resnick, C. D. Keene, T. J. Montine, G. D. Schellenberg, J. L. Haines, H. Zetterberg, K. Blennow, E. B. Larson, S. C. Johnson, M. Albert, A. Moghekar, J. L. del Aguila, M. V. Fernandez, J. Budde, J. Hassenstab, A. M. Fagan, M. Riemenschneider, R. C. Petersen, L. Minthon, V. M. Van Deerlin, V. M-Y Lee, L. M. Shaw, J. Q. Trojanowski, E. R. Peskind, G. Li, N. J. Cox, for the Alzheimer's Disease Neuroimaging Initiative, for the Alzheimer's Disease Genetics Consortium, A. M. Goate, D. A. Bennett, J. A. Schneider, A. L. Jefferson, C. Cruchaga, T. J. Hohman (2018): ‘‘Sex-Specific Genetic Predictors of Alzheimer's Disease Biomarkers,’’ Acta neuropathologica, 1 - 16.

  37. T. J. Hohman, L. Dumitrescu, L. L. Barnes, M. Thambisetty, G. Beecham, B. Kunkle, K. A. Gifford, W. S. Bush, L. B. Chibnik, S. Mukherjee, P. L. De Jager, W. Kukull, P. K. Crane, S. M. Resnick, C. D. Keene, T. J. Montine, G. D. Schellenberg, J. L. Haines, H. Zetterberg, K. Blennow, E. B. Larson, S. C. Johnson, M. Albert, D. A. Bennett, J. A. Schneider, A. L. Jefferson, for the Alzheimer's Disease Genetics Consortium and the Alzheimer's Disease Neuroimaging Initiative (2018): ‘‘Sex-Specific Association of Apolipoprotein E With Cerebrospinal Fluid Levels of Tau,’’ JAMA Neurology, DOI:10.1001/jamaneurol.2018.0821.

  38. Q. Lu, B. Li, D. Ou, M. Erlendsdottir, R. Powles, T. Jiang, Y. Hu, D. Chang, C. Jin, W. Dai, Q. He, Z. Liu, S. Mukherjee, P. K. Crane, H. Zhao (2017): ‘‘ A powerful approach to estimating annotation-stratified genetic covariance via GWAS summary statistics,’’ The American Journal of Human Genetics, 101 (6): 939 - 964.

  39. J. A. Miller, A. Guillozet-Bongaarts, L. E. Gibbons, N. Postupna, A. Renz, A. E. Beller, S. M. Sunkin, L. Ng, S. E. Rose, K. A. Smith, A. Szafer,C. Barber, D. Bertagnolli, K. Bickley, K. Brouner, S. Caldejon, M. Chapin, M. L. Chua, N. M. Coleman, E. Cudaback, C. Cuhaciyan, R. A. Dalley, N. Dee, T. Desta, T. A. Dolbeare, N. Dotson, M. Fisher, N. Gaudreault, G. Gee, T. L. Gilbert, J. Goldy, F. Griffin, C. Habel, Z. Haradon, N. Hejazinia, L. L. Hellstern, K. Howard, R. Howard, J. Johal, N. L.Jorstad, S. R. Josephsen, C. L. Kuan, F. Lai, E. Lee, F. Lee, T. Lemon, X. Li, D. A. Marshall, J. Melchor, S. Mukherjee, J. Nyhus, J. Pendergraft, L. Potekhina, E. Y. Rha, S. Rice, D. Rosen, A. Sapru, A. Schantz, E. Shen, E. Sherfield, S. Shi, A. J. Sodt, N. Thatra, M. Tieu, R. Walker, A. M. Wilson, T. J. Montine, E. B. Larson, A. Bernard, P. K. Crane, R. G. Ellenbogen, C. D. Keene, E. Lein (2017): ‘‘Neuropathological and transcriptomic characteristics of the aged brain,’’ eLIFE, DOI: 10.7554/eLife.31126.

  40. P. K. Crane, E. Trittschuh, S. Mukherjee, A. J. Saykin, E. Sanders, E. B. Larson, S. McCurry, W. McCormick, J. D. Bowen, T. Grabowski, M. Moore, J. Bauman, C. D. Keene, L. E. Gibbons, J. Mez, for the Executive Prominent Alzheimer's Disease: Genetics and Risk Factors (EPAD: GRF) Investigators (2017): ‘‘Incidence of cognitively-defined late-onset Alzheimer's disease subgroups from a prospective cohort study,’’ Alzheimer's & Dementia, 13 (12):1307 - 1316.

  41. R. Sims, S. J. van der Lee, A. C. Naj, C. Bellenguez, …, S. Mukherjee, …, GERAD, PERADES, CHARGE, ADGC, EADI, …, J-C. Lambert, S. Seshadri, J. Williams, G. D. Schellenberg (2017): ‘‘Rare coding variants in PLCG2, ABI3 and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease,’’ Nature Genetics, 49 (9):1373 - 1384.

  42. N. Z. R. Steele, J. Carr, L. W. Bonham, E. G. Geier, V. Damotte, Z. A Miller, R. S. Desikan, K. L. Boehme, S. Mukherjee, P. K. Crane, J. S. K. Kauwe, J. H. Kramer, B. L. Miller, G. Coppola, J. A. Hollenbach, J. S. Yokoyama, for the Alzheimer's Disease Neuroimaging Initiative (2017): ‘‘Fine-mapping of the human leukocyte antigen (HLA) locus as a risk factor for Alzheimer's disease: A Case-Control Study,’’ PLoS Medicine, 14(3): e1002272.

  43. Q. Lu, R. L. Powles, S. Abdallah, D. Ou, Q. Wang, Y. Hu, Y. Lu, W. Liu, S. Mukherjee, P. K. Crane, H. Zhao (2017): ‘‘Systematic tissue-specific functional annotation of the human genome highlights immune-related DNA elements for late-onset Alzheimer's disease,’’ PLoS Genetics, 13(7): e1006933.

  44. J. Mez, J. R. Marden, S. Mukherjee, S. Walter, L. E. Gibbons, A. L. Gross, L. B. Zahodne, P. Gilsanz, P. Brewster, K. Nho, P. K. Crane, E. B. Larson, M. M. Glymour (2017): ‘‘Alzheimer's disease genetic risk variants beyond APOE$epsilon4$ predict mortality,’’ Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring, 8: 188 - 195.

  45. L. B. Chibnik, C. C. White, S. Mukherjee, T. Raj, L. Yu, E. B. Larson, T. J. Montine, C. D. Keene, J. Sonnen, J. A. Schneider, P. K. Crane, J. M. Shulman, D. A. Bennett, P. L. de Jager (2017): ‘‘Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy and other neuropathologies,’’ Molecular Psychiatry, doi: 10.1038/mp.2017.20.

  46. D. W. Fardo, Laura E. Gibbons, S. Mukherjee, M. M. Glymour, W. McCormick, S. M. McCurry, J. D. Bowen, E. B. Larson, P. K. Crane (2017): ‘‘Impact of home visit capacity on genetic association studies of late-onset Alzheimer's disease,’’ Alzheimer's & Dementia, 13 (8): 933 - 939.

  47. S. Mukherjee, D. T. Carr, J. D. Burgess, M. A. Younkin, D. Serie, K. L. Boehme, J. SK. Kauwe, A. C. Naj, D. W. Fardo, D. W. Dickson, T. J. Montine, N. Ertekin-Taner, M. R. Kaeberlein, P. K. Crane (2017): ‘‘Systems-biology approach to Late-Onset Alzheimer’s Disease GWAS identifies novel candidate genes validated using brain expression data and C. elegans experiment,’’ Alzheimer's & Dementia, 13 (10):1133 - 1142.

  48. G R. Jun, J. Chung, J. Mez, R. Barber, G. W. Beecham, D. A. Bennett, J. D. Buxbaum, G. S. Byrd, M. M. Carrasquillo, P. K. Crane, C. Cruchaga, P. De Jager, N. Ertekin-Taner, D. Evans, M. D. Fallin, T. M. Foroud, R. P. Friedland, A. M. Goate, N. R. Graff-Radford, H. Hendrie, K. S. Hall, K. L. Hamilton-Nelson, R. Inzelberg, M .T. Kamboh, J. S. K. Kauwe, W. A. Kukull, B. W. Kunkle, R. Kuwano, E. B. Larson, M. W. Logue, J. Manly, E. R. Martin, T. J. Montine, S. Mukherjee, A. Naj, E. M. Reiman, C. Reitz, R. Sherva, P. H. St. George-Hyslop, T. Thornton, S. G. Younkin, B. N. Vardarajan, L-S Wang, J. R. Wendlund, A. R. Winslow, Alzheimer's Disease Genetics Consortium, J. Haines, R. Maueux, M. A. Pericak-Vance, G. Schellenberg, K. L. Lunetta, L. A. Farrer (2017): ‘‘Transethnic genome-wide scan identifies novel Alzheimer's disease loci,’’ Alzheimer's & Dementia, 13 (7):727 - 738.

  49. V. Chouraki, C. Reitz, F. Maury, J.C. Bis, C. Bellenguez, L. Yu, J. Jakobsdottir, S. Mukherjee, H. H. Adams, S. H. Choi, E. B. Larson, A. Fitzpatrick, A. G. Uitterlinden, P. L. de Jager, A. Hofman, V. Gudnason, B. Vardarajan, C. Ibrahim-Verbaas, S. J. van der Lee, O. Lopez, J-F Dartigues, C. Berr, P. Amouyel, D. A. Bennett, C. M. van Duijn, A. DeStefano, L. J. Launer, M. A. Ikram, P. K. Crane, J-C Lambert, R. Mayeux, S. Seshadri (2016): ‘‘Evaluation of a genetic risk score to improve risk prediction for Alzheimer's disease.’’ Journal of Alzheimer's Disease, 53: 921 - 932.

  50. M. T.W. Ebbert, K. L. Boehme, M. E. Wadsworth, Alzheimer's Disease Neuroimaging Initiative, Alzheimer's Disease Genetics Consortium, S. Mukherjee, P. K. Crane, P. G. Ridge, J. S.K. Kauwe (2016): ‘‘Interaction between variants in CLU and MS4A4E modulates Alzheimer's disease risk.’’, Alzheimer's & Dementia, 12 (2): 121 - 129.

  51. J. Mez*, S. Mukherjee*, T. Thornton, D. Fardo, E. Trittschuh, S. Sutti, R. Sherva, J. SK. Kauwe, A. C. Naj, G. W. Beecham, A. Gross, A. J. Saykin, R. C. Green and P. K. Crane, for Alzheimer's Disease Neuroimaging Initiative and Alzheimer's Disease Genetics Consortium (2016): ‘‘Prominent executive dysfunction in Alzheimer's disease is highly heritable.’’ Neurobiology of Aging, 41: 115 - 121.

  52. T. J. Hohman, W. S. Bush, L. Jiang, K. D. Brown-Gentry, E. S. Torstenson, S. M. Dudek, S. Mukherjee, A. C. Naj, B. W. Kunkle, M. D. Ritchie, E. R. Martin, G. S. Schellenberg, R. Mayeux, L. A. Farrer, M. A. Pericak-Vance, J. L. Haines, T. .A. Thornton-Wells for the Alzheimer's Disease Genetics Consortium (2016): ‘‘Discovery of gene-gene interactions across multiple independent datasets of Late Onset Alzheimer Disease from the Alzheimer Disease Genetics Consortium’’, Neurobiology of Aging, 38: 141 - 150.

  53. S. Walter, J. R. Marden, L. D. Kubzansky, E. R. Mayeda, P. K. Crane, S-C Chang, M. Cornelis, D. H. Rehkopf, S. Mukherjee, M. M. Glymour (2015): ‘‘Diabetic Phenotypes and Late-Life Dementia Risk: A Mechanism-specific Mendelian Randomization Study.’’, Alzheimer Disease & Associated Disorders, 30 (1): 15 - 20.

  54. A. L. Gross, D. M. Mungas, P. K. Crane, L. E. Gibbons, A. MacKay-Brandt, J. J. Manly, S. Mukherjee, H. Romero, B. Sachs, M. Thomas, G. G. Potter, R. N. Jones (2015): ‘‘Effect of education and race on cognitive decline: An integrative study of generalizability versus study-specific results’’, Psychology and Aging, 430 (4): 863 - 880.

  55. T. J. Hohman, D. Liu, L. Samuels, K. A. Gifford, S. Mukherjee, F. L. Ruberg, A. L. Jefferson, for the Alzheimer's Disease Neuroimaging Initiative (2015): ‘‘Stroke Risk Interacts with Alzheimer's Disease Biomarkers on Brain Aging Outcomes.’’, Neurobiology of Aging, 36 (9): 2501 - 2508.

  56. S. O. Ostergaard, S. Mukherjee, S. J. Sharp, P. Proitsi, L. A. Lotta, F. Day, K. L. Boehme, S. Walter, J. SK. Kauwe, L. E. Gibbons, Alzheimer's Disease Genetics Consortium, The Genetic and Environmental Risk in AD Consortium, The EPIC-InterAct consortium, E. B. Larson, J. F. Powell, C. Langenberg, P. K. Crane, N. J. Wareham and R. A. Scott (2015): ‘‘Associations between potentially modifiable risk factors and Alzheimer's disease: A Mendelian randomization study.’’, PLoS Medicine, doi: 10.1371/journal.pmed.1001841.

  57. R. Fieo, S. Mukherjee, N. O. Dmitrieva, D. Fyffe, A. L. Gross, R. E. Sanders, H. R. Romero, G. G. Potter, J. J. Manly, D. Mungas, and L. E. Gibbons (2015): ‘‘Differential Item Functioning due to cognitive status does not impact depressive symptom measures in four heterogeneous samples of older adults.’’ International Journal of Geriatric Psychiatry, 30 (9): 911 - 918.

  58. M. Malik, J. Chiles III, C. Medway, J. Simpson, D. Howard, Y. Liang, C. Paumi, S. Mukherjee, P. K. Crane, S. Younkin, D. W. Fardo, S. Estus (2015): ‘‘Genetics of CD33 in Alzheimer's Disease and Acute Myeloid Leukemia.’’ Human Molecular Genetics, 24 (12): 3557 - 3570.

  59. S. Mukherjee*, S. Walter*, P. K. Crane, M. M. Glymour, for ADGC, ACT, and ROSMAP (2015): ‘‘Genetically Predicted Body Mass Index and Alzheimer's Disease Related Phenotypes in Three Large Samples: Mendelian Randomization Analyses’’, Alzheimer's & Dementia, 11 (12), 1439 - 1451.

  60. A. L. Gross, R. Sherva, S. Mukherjee, S. J. Newhouse, J. SK. Kauwe, L. M. Munsie, L. B. Waterston, D. A. Bennett, R. N. Jones, R. C. Green and P. K. Crane, for the Alzheimer's Disease Neuroimaging Initiative, GENAROAD Consortium, and AD Genetics Consortium (2014): ‘‘Calibrating longitudinal cognition in Alzheimer's disease across diverse test batteries and datasets.’’ Neuroepidemiology, 43 (3-4): 194 - 205.

  61. D. Crosslin, D. Carrell, A. Burt, D. Kim, J. O. Underwood, D. Hanna, B. Comstock, E. Baldwin, M. de Andrade, I. Kullo, G. Tromp, H. Kuivaniemi, K. Borthwick, C. McCarty, P. Peissig, K. Doheny, E. Pugh, A. Kho, J. Pacheco, M. G. Hayes, M. Ritchie, S. Verma, G. Armstrong, A. Saip, S. Stallings, J. Denny, R. Carroll, D. Crawford, P. Crane, S. Mukherjee, E. Bottinger, T. Manolio, R. Li, B. Keating, D. Mirel, C. Carlson, J. Harley, E. Larson, G. Jarvik (2015): ‘‘Genetic variation in the HLA region is associated with susceptibility to herpes zoster.’’ Genes and Immunity, 16 (1): 1 - 7.

  62. S. S. Verma, M. de Andrade, G. C. Tromp, H. S. Kuivaniemi, E. Pugh, B. Namjou-khales, S. Mukherjee, L. Kottyan, S. Nelson, A. Burt, Y. Bradford, G. D. Armstrong, D. C. Crawford, J. L. Haines, R. Li, D. Crosslin, M. D. Ritchie (2014): ‘‘Imputation and QC for combining multiple genome-wide datasets.’’ Frontiers in Applied Genetic Epidemiology, 5 (370), doi: 10.3389/fgene.2014.00370 .

  63. M. Allen, M. Kachadoorian, Z. Quicksall, F. Zou, H. S. Chai, C. Younkin, J. E. Crook, V. S. Pankratz, M. M. Carrasquillo, S. Krishnan, T. Nguyen, L. Ma, K. Malphrus, S. Lincoln, G. Bisceglio, C. P. Kolbert, J. Jen, S. Mukherjee, J. K. Kauwe, P. K. Crane, J. L. Haines, R. Mayeux, M. A. Pericak-Vance, L. A. Farrer, G. D. Schellenberg, Alzheimer's Disease Genetics Consortium (ADGC), J. E. Parisi, R. C. Petersen, N. R. Graff-Radford, D. W. Dickson, S. G. Younkin, N. Ertekin-Taner (2014): ‘‘Association of MAPT haplotypes with Alzheimer's disease risk and MAPT brain gene expression levels’’. Alzheimer's Research and Therapy, 6 (39), doi:10.1186/alzrt268.

  64. S. J. Schrodi, S. Mukherjee, Y. Shan, G. C. Tromp, A. Callear, T. C. Carter, J. L. Haines, M. H. Brilliant, P. K. Crane, R. Elston, D. E. Weeks, D. T. Smelser (2014): ‘‘Genetic-Based Prediction of Disease Traits: Prediction is Very Difficult, Especially about the Future’’. Frontiers in Applied Genetic Epidemiology, 5 (162), doi: 10.3389/fgene.2014.00162. (PDF).

  65. X. Sun, Q. Lu, S. Mukherjee, P. K. Crane, R. Elston, M. D. Ritchie (2014): ‘‘Analysis pipeline for the epistasis search – statistical versus biological filtering’’. Frontiers in Applied Genetic Epidemiology, 5 (106), doi: 10.3389/fgene.2014.00106. (PDF).

  66. N. O. Dmitrieva, D. Fyffe, S. Mukherjee, R. Fieo, L. B. Zahodne, J. Hamilton, G. G. Potter, J. J. Manly, H. R. Romero, D. Mungas, and L. E. Gibbons (2015): ‘‘Demographic characteristics do not decrease the utility of depressive symptoms assessments: examining the practical impact of item bias in four heterogeneous samples of older adults’’ International Journal of Geriatric Psychiatry, 30 (1): 88 - 96.

  67. S. Mukherjee*, A. S. Varde*, G. Javidi and E. Sheybani (2013): Predictive analysis of engine health for decision support. SIGKDD Explorations, 15 (2), 39 - 49. doi:10.1145/2641190.2641197

  68. S. Mukherjee, H. Rodriguez, M. N. Elliott, and P. K. Crane (2013): Modern psychometric methods for estimating physician performance on the clinician group CAHPS® survey. Health Services Research & Outcomes Methodology, 13 (2), 109 - 123. (PDF)

  69. P. G. Ridge, S. Mukherjee, P. K. Crane, J. SK. Kauwe, Alzheimer's Disease Genetics Consortium (2013): Alzheimer's disease: finding the missing heritability PLoS ONE, 8(11): e79771. doi:10.1371/journal.pone.0079771. (PDF)

  70. S. Mukherjee, S. Kim, V. K. Ramanan, L. E. Gibbons, K. Nho, M. M. Glymour, N. Ertekin-Taner, T. J. Montine, A. J. Saykin, and P. K. Crane (2013): Gene-based GWAS and -biological pathway analysis of the resilience of executive functioning. Brain Imaging and Behavior, 8 (1): 110 - 118. (PDF)

  71. S. Mukherjee, L. E. Gibbons, E. Kristjansson and P. K. Crane (2013): Extension of an iterative hybrid ordinal logistic regression/item response theory approach to detect and account for differential item functioning in longitudinal data. Psychological Test and Assessment Modeling, 55 (2), 127 - 147. (PDF)

  72. C. Habeck, S. L. Risacher, G. J. Lee, M. M. Glymour, E. Mormino, S. Mukherjee, S. Kim, K. Nho, C. DeCarli, A. J. Saykin, and P. K. Crane (2012): Relationship between baseline brain metabolism measured using (18F) FDG PET and memory and executive function in prodromal and early Alzheimer's disease. Brain Imaging and Behavior, 6 (4): 568 - 583. DOI: 10.1007/s11682-012-9208-x

  73. S. Mukherjee, E. Trittschuh, L. E. Gibbons, R. S. Mackin, A. J. Saykin, and P. K. Crane (2012): Dysexecutive and amnesic AD subtypes defined by single indicator and modern psychometric approaches: relationships with SNPs in ADNI. Brain Imaging and Behavior, 6 (4): 649 - 660. (PDF)

  74. K. Nho, S. L. Risacher, P. K. Crane, C. DeCarli, M. M. Glymour, C. Habeck, S. Kim, G. J. Lee, E. Mormino, S. Mukherjee, L. Shen, J. D. West, and A. J. Saykin (2012): Voxel and Surface-Based Topography of Memory and Executive Deficits in Mild Cognitive Impairment and Alzheimer's Disease. Brain Imaging and Behavior, 6 (4): 551 - 567. DOI: 10.1007/s11682-012-9203-2

  75. V. K. Ramanan, S. Kim, K. Holohan, L. Shen, K. Nho, S. L. Risacher, T. M. Foroud, S. Mukherjee, P. K. Crane, P. S. Aisen, R. C. Petersen, M. W. Weiner, and A. J. Saykin (2012): Genome-wide pathway analysis of memory impairment in the Alzheimer's Disease Neuroimaging Initiative (ADNI) cohort implicates gene candidates, canonical pathways, and networks. Brain Imaging and Behavior, 6 (4): 634 - 648. DOI: 10.1007/s11682-012-9196-x

  76. S. Mukherjee, S. Kim, L. E. Gibbons, K. Nho, S. L. Risacher, M. M. Glymour, C. Habeck, G. J. Lee, E. Mormino, N. Ertekin-Taner, T. J. Montine, C. DeCarli, A. J. Saykin, and P. K. Crane (2012): Genetic architecture of resilience of executive functioning. Brain Imaging and Behavior, 6 (4): 621 - 633. (PDF)

  77. L. E. Gibbons, A. C. Carle, R. S. Mackin, D. Harvey, S. Mukherjee, P. Insel, S. M. Curtis, D. Mungas, and P. K. Crane (2012): A composite score for executive functioning, validated in Alzheimer's Disease Neuroimaging Initiative (ADNI) participants with baseline mild cognitive impairment. Brain Imaging and Behavior, 6 (4): 517 - 527. DOI: 10.1007/s11682-012-9176-1

  78. P. K. Crane, A. Carle, L. E. Gibbons, P. Insel, R. S. Mackin, A. Gross, R. N. Jones, S. Mukherjee, S. M. Curtis, D. Harvey, M. Weiner, and D. Mungas (2012): Development and assessment of a composite score for memory in the Alzheimer's Disease Neuroimaging Initiative (ADNI). Brain Imaging and Behavior, 6 (4): 502 - 516. DOI: 10.1007/s11682-012-9186-z

  79. A. C. Carle, D. Cella, L. Cai, S. W. Choi, P. K. Crane, S. M. Curtis, J. Gruhl, J-S Lai, S. Mukherjee, S. P. Reise, J. A. Teresi, D. Thissen, E. J. Wu, and R. D. Hays (2011): Advancing PROMIS's methodology: results of the Third Patient-Reported Outcomes Measurement Information System (PROMIS®) Psychometric Summit. Expert review of pharmacoeconomics & outcomes research, 11 (6): 677 - 684. DOI 10.1586/erp.11.74

  80. D. C. Fyffe, S. Mukherjee, L. L. Barnes, J. J. Manly, D. A. Bennett, and P. K. Crane (2011): Explaining differences in episodic memory performance among older African Americans and whites: the roles of factors related to cognitive reserve and test bias. Journal of the International Neuropsychological Society, 17 (4): 625 - 638. DOI: 10.1017/S1355617711000476

  81. K. Krishnamoorthy, T. Mathew, and S. Mukherjee (2008): Normal-Based Methods for a Gamma Distribution: prediction and tolerance intervals and stress-strength reliability. Technometrics, 50 (1): 69 - 78. (PDF)

  82. K. Krishnamoorthy, S. Mukherjee, and H. Guo (2007): Inference on reliability in two-parameter exponential stress-strength model. Metrika, 65 (3): 261 - 273. (PDF)

  83. J. C. Misra, S. Mukherjee, and A. K. Das (2004): A mathematical model for enzymatic action on DNA knots and links. Mathematical and computer modelling, 39 (13): 1423 - 1430. (PDF)