High Performance Scientific Computing
Coursera Edition
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Condensed Table of Contents without subsections
ΒΆ
Contents of class notes for UW HPSC – Coursera Edition
Course materials
Notes on the Coursera Edition
About these notes – important disclaimers
Overview and syllabus
Homework
Downloading and installing software for this class
Virtual Machine for this class
Amazon Web Services EC2 AMI
Software Carpentry
Technical Topics
Shells
Unix, Linux, and OS X
Unix
top
command
Using ssh to connect to remote computers
Text editors
Reproducibility
Version Control Software
Git
Bitbucket repositories: viewing changesets, issue tracking
More about Git
Sphinx documentation
Binary/metric prefixes for computer size, speed, etc.
Computer Architecture
Storing information in binary
Punch cards
Python and Fortran
Python
Python
Python scripts and modules
Python functions
Python strings
Numerics in Python
IPython_notebook
Sage
Plotting with Python
Python debugging
Fortran
Fortran
Useful gfortran flags
Fortran subroutines and functions
Fortran examples: Taylor series
Array storage in Fortran
Fortran modules
Fortran Input / Output
Fortran debugging
Fortran example for Newton’s method
Parallel computing
OpenMP
MPI
Miscellaneous
Makefiles
Special functions
Timing code
Linear Algebra software
Random number generators
Applications
Numerical methods for the Poisson problem
Jacobi iteration using OpenMP with
parallel do
constructs
Jacobi iteration using OpenMP with coarse-grain
parallel
block
Jacobi iteration using MPI
References
Bibliography and further reading
Software Carpentry
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