Implements the source terms for intraspecies collisions arising from a cylindrical geometry. More...

#include <intraspecies_cyl_source.h>

Inheritance diagram for wxm::apps::viscousmhd::IntraspeciesCyl:

Detailed Description

Implements the source terms for intraspecies collisions arising from a cylindrical geometry.

See collisions writeup document for details.

For the Cartesian flux application intraspecies_collisions_t.

Warpy constructor: warpy.apps.mhd.viscousmhd.viscousmhd.intraspecies_cyl_source

Public Member Functions
	IntraspeciesCyl ()

	~IntraspeciesCyl () override

void	setup (const WxCryptSet &wxc) override

const std::vector< int > &	getInputVariableIndexes (int flag) const override

const std::vector< int > &	getAuxiliaryVariableIndexes (int flag) const override

const std::vector< int > &	getOutputVariableIndexes (int flag) const override

real	source (const real q, const real aux, const elementGeometry_t pEG, real source) const override

Public Member Functions inherited from WmApplication
	WmApplication ()

virtual	~WmApplication ()=default

virtual void	setup (const WxCryptSet &wxc)

virtual const std::vector< int > &	getAuxiliaryVariableIndexes (int flag=WMAPPLICATIONFLAG_NONE) const

virtual const std::vector< int > &	getCrossVariableIndexes (int flag=WMAPPLICATIONFLAG_NONE) const

const std::vector< std::string > &	getBoundaryNames () const

bool	isOnBoundary (const std::string &boundaryName) const

bool	has (int flag) const

virtual real	numerical_flux (const real q_l, const real q_r, const real aux_l, const real aux_r, const solverVariables_t pFV, real numericalFlux) const

virtual real	internal_flux (const real q, const real aux, const solverVariables_t *pSV, std::vector< std::vector< real > > &internalFlux) const

virtual real	source (const real q, const real aux, const elementGeometry_t pEG, real source) const

virtual void	bc_q (const real q_in, const real aux_in, const real aux_out, const solverVariables_t pFV, real *q_out) const
	Boundary Condition Application which sets the boundary condition on ghost nodes.

virtual real	bcNumericalFlux (const real q_l, const real q_r, const real aux_l, const real aux_r, const solverVariables_t pFV, real numericalFlux) const

virtual void	conserved_to_primitive (const real q, const real aux, real *w) const

virtual void	primitive_to_conserved (const real w, const real aux, real *q) const

virtual void	evaluate_function (const real q, const real aux, const solverVariables_t pSV, real result) const

virtual void	bc_q_kinetic (const real q_in, const real aux_in, const solverVariables_t pFV, real q_out) const

std::shared_ptr< std::string >	app_name ()

virtual const std::vector< int > &	getInputVariableIndexes (int flag=0) const

virtual const std::vector< int > &	getOutputVariableIndexes (int flag=0) const

Protected Attributes
real	_gas_gamma
	Adiabatic Index.

real	_charge
	Ion charge of species.

real	_mass
	Mass of species.

real	_nuptau
	Normalized collision frequency, needed if using Chodura resistivity.

real	_coulomb_log
	Coulomb log (defaults to 10).

real	_collision_coefficient

real	_minimum_frequency
	Minimum collision frequency (defaults to 0).

real	_const_mu
	Constant viscosity coefficient (if absent, physical value is computed)

bool	_ifconst_mu

real	_const_k
	Constant thermal conductivity coefficient (if absent, physical value is computed)

bool	_ifconst_k

real	_min_density
	Density floor.

real	_min_pressure
	Pressure floor.

int	_radial_index
	Index of radial component (optional; defaults to 0).

int	_ir

int	_ith

int	_iz

std::vector< int >	_input_variables

std::vector< int >	_aux_variables

std::vector< int >	_output_variables

Protected Attributes inherited from WmApplication
std::string	_app_name

WxLogStream	_debStrm

std::vector< int >	_allowedFlags

std::vector< std::string >	_onBoundaries

Additional Inherited Members
Public Types inherited from WmApplication
typedef Application_Variable	WmApplication_Variable

typedef std::map< std::string, std::string >	replaceMap_t

Static Public Attributes inherited from wxm::app_base
static std::vector< int >	empty

Protected Member Functions inherited from wxm::app_base
virtual	~app_base ()=default

Constructor & Destructor Documentation

◆ IntraspeciesCyl()

wxm::apps::viscousmhd::IntraspeciesCyl::IntraspeciesCyl ( )

◆ ~IntraspeciesCyl()

wxm::apps::viscousmhd::IntraspeciesCyl::~IntraspeciesCyl ( )

override

Member Function Documentation

◆ getAuxiliaryVariableIndexes()

const std::vector< int > & wxm::apps::viscousmhd::IntraspeciesCyl::getAuxiliaryVariableIndexes ( int flag ) const

inlineoverridevirtual

Reimplemented from WmApplication.

◆ getInputVariableIndexes()

const std::vector< int > & wxm::apps::viscousmhd::IntraspeciesCyl::getInputVariableIndexes ( int flag ) const

inlineoverridevirtual

Reimplemented from wxm::app_base.

◆ getOutputVariableIndexes()

const std::vector< int > & wxm::apps::viscousmhd::IntraspeciesCyl::getOutputVariableIndexes ( int flag ) const

inlineoverridevirtual

Reimplemented from wxm::app_base.

◆ setup()

void wxm::apps::viscousmhd::IntraspeciesCyl::setup ( const WxCryptSet & wxc )

overridevirtual

Reimplemented from WmApplication.

◆ source()

real wxm::apps::viscousmhd::IntraspeciesCyl::source	(	const real *	q,
		const real *	aux,
		const elementGeometry_t *	pEG,
		real *	source
	)		const

overridevirtual

Reimplemented from WmApplication.

Member Data Documentation

◆ _aux_variables

std::vector<int> wxm::apps::viscousmhd::IntraspeciesCyl::_aux_variables

protected

◆ _charge

real wxm::apps::viscousmhd::IntraspeciesCyl::_charge

protected

Ion charge of species.

◆ _collision_coefficient

real wxm::apps::viscousmhd::IntraspeciesCyl::_collision_coefficient

protected

◆ _const_k

real wxm::apps::viscousmhd::IntraspeciesCyl::_const_k

protected

Constant thermal conductivity coefficient (if absent, physical value is computed)

◆ _const_mu

real wxm::apps::viscousmhd::IntraspeciesCyl::_const_mu

protected

Constant viscosity coefficient (if absent, physical value is computed)

◆ _coulomb_log

real wxm::apps::viscousmhd::IntraspeciesCyl::_coulomb_log

protected

Coulomb log (defaults to 10).

◆ _gas_gamma

real wxm::apps::viscousmhd::IntraspeciesCyl::_gas_gamma

protected

Adiabatic Index.

◆ _ifconst_k

bool wxm::apps::viscousmhd::IntraspeciesCyl::_ifconst_k

protected

◆ _ifconst_mu

bool wxm::apps::viscousmhd::IntraspeciesCyl::_ifconst_mu

protected

◆ _input_variables

std::vector<int> wxm::apps::viscousmhd::IntraspeciesCyl::_input_variables

protected

◆ _ir

int wxm::apps::viscousmhd::IntraspeciesCyl::_ir

protected

◆ _ith

int wxm::apps::viscousmhd::IntraspeciesCyl::_ith

protected

◆ _iz

int wxm::apps::viscousmhd::IntraspeciesCyl::_iz

protected

◆ _mass

real wxm::apps::viscousmhd::IntraspeciesCyl::_mass

protected

Mass of species.

◆ _min_density

real wxm::apps::viscousmhd::IntraspeciesCyl::_min_density

protected

Density floor.

◆ _min_pressure

real wxm::apps::viscousmhd::IntraspeciesCyl::_min_pressure

protected

Pressure floor.

◆ _minimum_frequency

real wxm::apps::viscousmhd::IntraspeciesCyl::_minimum_frequency

protected

Minimum collision frequency (defaults to 0).

◆ _nuptau

real wxm::apps::viscousmhd::IntraspeciesCyl::_nuptau

protected

Normalized collision frequency, needed if using Chodura resistivity.

◆ _output_variables

std::vector<int> wxm::apps::viscousmhd::IntraspeciesCyl::_output_variables

protected

◆ _radial_index

int wxm::apps::viscousmhd::IntraspeciesCyl::_radial_index

protected

Index of radial component (optional; defaults to 0).

To configure the coordinate systems as [r,theta,z] or [z,r,theta], set this variable to either 0 or 1, respectively.

The documentation for this class was generated from the following file:

src/apps/mhd/viscousmhd/intraspecies_cyl_source.h

Detailed Description

Public Member Functions

Protected Attributes

Additional Inherited Members

Constructor & Destructor Documentation

◆ IntraspeciesCyl()

◆ ~IntraspeciesCyl()

Member Function Documentation

◆ getAuxiliaryVariableIndexes()

◆ getInputVariableIndexes()

◆ getOutputVariableIndexes()

◆ setup()

◆ source()

Member Data Documentation

◆ _aux_variables

◆ _charge

◆ _collision_coefficient

◆ _const_k

◆ _const_mu

◆ _coulomb_log

◆ _gas_gamma

◆ _ifconst_k

◆ _ifconst_mu

◆ _input_variables

◆ _ir

◆ _ith

◆ _iz

◆ _mass

◆ _min_density

◆ _min_pressure

◆ _minimum_frequency

◆ _nuptau

◆ _output_variables

◆ _radial_index