Instructor: |
Professor Hong Qian Lewis 319 tel: 543-2584 fax: 685-1440 hqian@u.washington.edu office hours: Wed. 1-2 |
McQuarrie (1967) and Gillespie (2007) on Stochastic theory and simulations of chemcial kinetics
Qian: Nonlinear stochastic dynamics of mesoscopic homogeneous biochemical reaction systems,
Qian: Cooperativity in cellular biochemical processes
Hopfield: Physics, computation, and why biology looks so different?
Laughline et al: The middle way
Qian et al: A theory of mesoscopic phenomena
Wilkinson: Stochastic modelling for quantitative description of heterogeneous biological systems
Delbrück: Statistical fluctuations in autocatalytic reactions
Higham: Modeling and simulating chemical reactions
Qian: Cooperativity and specificity in enzyme kinetics: A single-molecule time-based perspective
Fox: Gaussian stochastic processes in physics
Kwon et al: Structure of stochastic dynamics near fixed points
Week 1: There is no homework/report.
Week 2: Homework #1, Due Fri. Oct. 14
Week 3: Homework #2, Due Fri. Oct. 21
Week 4: Homework #3, Due Fri. Oct. 28
Week 5: Homework #4, Due Fri. Nov. 4
Week 7: Homework #5, Due Mon. Nov. 21
<qian@amath.washington.edu> | Mon Sep 24 16:15:50 PDT 2012 |