VA Summer Epi -- Lecture Files -- 2006

General
- Overview of Each Day = a log of what was covered in class (refresh)
Day 1
- 26 Jun 2006 Notes: Introduction
- 26 Jun 2006 Notes: Analysis of CF Data --- Analysis of CF Data using STATA with "derived variable" and mixed model approaches.
- 26 Jun 2006 NewCFkids.data --- example longitudinal data set
- 26 Jun 2006 NewCFkids.txt --- documentation
- 26 Jun 2006 Information on Cystic Fibrosis --- from Mayo Clinic
- 26 Jun 2006 cfkids-do.txt --- STATA code for EDA
- 26 Jun 2006 cfkids-derived-do.txt --- STATA code for derived variable analysis
- 26 Jun 2006 cfkids-lmm-gee-do.txt --- STATA analysis using mixed models and GEE.
- 26 Jun 2006 Link to GLLAMM Information
- 26 Jun 2006 (we'll skip) Notes: Linear Mixed Models -- methods --- inference and estimation for linear mixed models (S+/R illustration).
- 26 Jun 2006 cfkids-CDA-NewLMM.q --- Analysis of CF Data using S+ / R and lme function
- 26 Jun 2006 Twiss et al. (2006) -- example of mixed model analysis
- 26 Jun 2006 Schaedel et al. (2002) -- example of mixed model
- 26 Jun 2006 Edwards (2000) -- introduction of mixed model methods for pediatricians!
- 26 Apr 2006 Corey et al. (1997) -- mixed model analysis of CF that incorporated death time.
Day 2
- 27 Jun 2006 Notes: Linear Mixed Models -- SAS --- analysis using SAS, and comparison of different covariance matrices.
- 27 Jun 2006 cfkids-sas.txt --- SAS code for regression analysis
- 27 Jun 2006 NewCFkids-SAS.data --- data to read in to SAS for regression analysis
- 27 Jun 2006 Link to some basic SAS Information -- thanks Colleen!!!
- 27 Jun 2006 Link to PROC MIXED example from SAS
- 27 Jun 2006 Littell, Pendergast, and Natarajan (2000) -- Tutorial paper on covariance models and SAS
Day 3
- 28 Jun 2006 Notes: Categorical Data and GEE
- 28 Jun 2006 HivnetWide.raw HIVNET Informed Consent data
- 28 Jun 2006 HivnetWide.txt HIVNET Informed Consent Data -- Documentation
- 28 Jun 2006 Coletti-2003JAIDS.pdf published analysis of knowledge items
- 28 Jun 2006 HivnetIC-do.txt STATA Analysis file
- 28 Jun 2006 HivnetIC-sas.txt SAS Analysis file
- 28 Jun 2006 vonEhrenstein (2006) AJE -- Example GEE analysis
- 28 Jun 2006 Dobkin (2006) J CLin Pain -- Example GEE analysis
- 28 Jun 2006 Savitz (2006) Epidemiology -- Example GEE analysis
- 28 Jun 2006 ThallWide.raw Seizure data
- 28 Jun 2006 thallGEE-do.txt STATA analysis file
Day 4
- 29 Jun 2006 Hanley-2003AJE.pdf -- discussion of GEE ideas (weighted estimation) for epidemiologists
- 29 Jun 2006 Notes: Missing Data
- 29 Jun 2005 panss-sas.txt -- SAS file for the analsis of the PANSS data. This shows both different choices for the covariance model, and linear and dummy variable models for the mean.
- 29 Jun 2005 panss-lst.txt -- SAS results.
- 29 Jun 2006 panss-sas.txt -- SAS file for the analsis of the PANSS data. This shows both different choices for the covariance model, and linear and dummy variable models for the mean.
- 29 Jun 2006 panss-lst.txt -- SAS results.
- 29 Jun 2006 Notes: Generalized Linear Mixed Models
- 29 Jun 2006 HivnetIC-glmm-do.txt --- STATA analysis file for conditional logistic regression and GLMM.
- 29 Jun 2005 hivnet-sas.txt --- SAS analysis file for GEE and GLMM.
- 29 Jun 2006 hivnet-lst.txt --- SAS output.