Associate Director of the School of Aquatic and Fishery Sciences at the University of Washington where his research focuses on characterizing physiological response of aquatic species to environmental change with a particular focus on the relationship of transcriptomics, genetics, and epigenetic modifications. Current research efforts include characterizing the adaptive potential of native bivalves in Puget Sound and the functional role of DNA methylation in marine invertebrates.
Growing up in coastal Alaska, I spent most of my youth being poked by sea urchins and stung by jellyfish. Undeterred, I dove into marine research at Bowdoin College, where I found a linkage between cold tolerance and mitochondrial genotype within the invasive European green crab. I then joined the Alaska Department of Fish and Game, where I worked on Bering Sea crab surveys, Tanner crab fecundity and movement studies, and fishery monitoring projects. After moving down to Seattle, I joined the Washington Department of Fish and Wildlife, where I researched forage fish spawning and development. At the Roberts lab, I joined my interests in disease and crabs by studying gene expression in southeast Alaskan Tanner crabs and in Hematodinium, the parasitic dinoflagellate that causes Bitter Crab Syndrome. In my free time, I love long-distance cycling and making candy. If you’d like to chat about anything at all (particularly if it happens to be crab-related), feel free to email me!
As a Chicago native and University of Chicago alumna, I spent close to zero time on the ocean until I turned 20 and was awarded a Metcalf Internship to study cephalopods at the Marine Biological Laboratory in Woods Hole, MA. After graduating, I moved out to Washington State to work with Puget Sound Restoration Fund and Pacific Hybreed doing shellfish, echinoderm and kelp aquaculture/research. In 2021, I joined the Roberts’ Lab at UW School of Aquatic and Fishery Sciences to work on various conservation genetics projects on Geoduck (P. generosa) and Pacific Oysters (C. gigas). Currently, I am working on controling the gonadal development of Geoduck by knockdown of candidate genes involved in primordial germ cell (PGC) specification. This will be done using morpholinos or CRISPER. In addition, I am working with Matt George (email@example.com) on studying environment-physiology interactions within marine organisms, with a particular emphasis on the molecular mechanisms that make aquaculture species within Washington State resilient to environmental change. Feel free to email me with any questions you may have!
Lab notebook | firstname.lastname@example.org
I grew up in the beautiful, landlocked city of Colorado Springs, CO, but I have always been fascinated by the ocean and marine life. In my undergraduate studies at Boston University, I developed a passion for marine invertebrates and studied coral epibionts living on mangrove prop roots in Belize. After graduating in 2015, I developed my skills in science and research through positions in medical molecular biology, seasonal environmental DNA work at The Nature Conservancy, and various environmental remote sensing roles in the NASA Earth Applied Sciences Program. I joined the Roberts Lab in Fall 2021, where I work on the E5 Coral Project. My research focuses on assessing the response of corals to changing environmental conditions in Moorea using epigenetic techniques. I am also interested in incorporating remotely-sensed datasets as model inputs to better understand the relationship between environmental stressors and organismal response. Please feel free to get in touch with me via email or through my LinkedIn!
Lab notebook | email@example.com
Deciding to chase my love of Orcas, coffee, and grunge to the Pacific Northwest has yielded this Baltimore, MD transplant an opportunity to become a double University of Washington alumna. I graduated with my B.S. in Marine Biology in 2021 and am continuing my academic pursuits as a SAFS and NSF Graduate Fellow. Moving into the marine science space has been a dream fulfilled. I am currently using -omics techniques to evaluate the relationship between environmental influences, ecotoxins, and organism physiology in the Pacific Northwest using bivalves as the target organisms. Moving through my graduate work I’d like to expand into warmer waters and study those relationships with Syngnathids as the target organisms. When not working in the lab I happily pepper my daughter with dad jokes, build community as the Mentorship Coordinator for BWEEMS, create content and programming as an active member of BIMS, and spend my free time moonlighting as a wannabe Chihuly in beginners glass blowing classes.
LinkedIn | firstname.lastname@example.org
I am a New England native and first generation Jamaican-American, born and raised in Hartford, CT. I am currently a fourth year NOAA-LMRCSC funded PhD student in the Marine-Estuarine-Environmental Science program at the University of Maryland Eastern Shore. I am also a NOAA EPP/MSI Graduate Fellow, selected as a part of the inaugural class of 2021. My dissertation research, titled: “Evaluating Physiological and Immune Responses of Tanner Crab (Chionoecetes bairdi) to Hematodinium sp. Infection” seeks to understand the effect of Hematodinium (parasitic dinoflagellate) on gene expression, immune response, immune function as well as metabolic function in Tanner crab. I am passionate about improving my knowledge as a bioinformatics scientist and applying this unique skill set to my work in interdisciplinary scientific research aimed to answer complex scientific questions and problems. As a STEM professional and woman of color, I believe heavily in representation, education/outreach, and bridging the communication gap between scientists and the general public. Activities that interest me in my down time include: hiking, yoga, board games, spending time outdoors, museums, road-trips, traveling, and any opportunity to learn something new.
I am a visitor of the Roberts lab twice over, once in the summer of 2019 and again during 2022. I have felt nothing but welcomed and included during my visits to the Roberts lab. This is a diverse and dynamic lab group that encourages professional and personal development of its members and visitors.
Postdoctoral Research Associates
As a National Oceanic Partnership Program (NOPP) Fellow I work jointly with the Roberts labs at the School of Aquatic and Fishery Sciences at the University of Washington and Mackenzie Gavery at the NOAA Northwest Fisheries Science Center located in Seattle, Washington. My research leverages state-of-the-art genomics tools to study environment-physiology interactions within marine organisms, with a particular emphasis on the molecular mechanisms that make aquaculture species within Washington State resilient to environmental change. Through my work I routinely conduct field and laboratory experiments to generate large-scale ‘omics’ datasets (e.g. epigenomics, proteomics, and metabolomics) that can be used to characterize the genetic diversity present within natural populations. This work serves to inform conservation efforts and the development of criteria for broodstock selection within the aquaculture industry to esnure the continued sustainable production of seafood within the United States. To process these diverse datasets, I develop and implement bioinformatics pipelines for data normalization, statistical analyses, and biological pathway analyses. I use an open access online lab notebook and GitHub to publicly share my analyses and support reproducibility. To achieve my research and education outreach aims I collaborate with commercial, tribal, and governmental fisheries organizations, and actively participate in outreach media development. I also regularly take advantage of the amazing hiking and boating activities that Pacific Northwest has to offer with my wife and two-year-old son.
Ariana S. Huffmyer, PhD
I am a postdoctoral researcher working with Dr. Hollie Putnam at the University of Rhode Island and Dr. Steven Roberts at the University of Washington studying the effects of climate change on marine invertebrate early life history, with a particular interest in the formation of coral-algal symbiosis during coral development.
My current research interests are in understanding how climate change affects coral performance and survival using multi-omic approaches. Increased frequency and severtity of marine heat waves is causing coral bleaching – the breakdown of the nutritional symbiosis between tropical corals and their algal endosymbionts. My research inveistigates the formation of symbiosis between corals and their algal symbionts during early development in coral species in Hawaii, USA and Moorea, French Polynesia by utilizing energetic, metabolomic, and transcriptomic approaches.
I am working with the E5 Coral team to examine coral physiological, metabolic, and epigenetic responses across nutrient gradients in Moorea. I use online notebooks and GitHub to publicly share my data and analyses.
I completed my Ph.D. in marine biology at the Hawaii Institute of Marine Biology in the Coral Resilience Lab – The Legacy of Ruth Gates and Lemus Labs where I studied how early life stages of corals respond to climate change driven thermal stress. My work investigated the influence of nutrition and thermal conditioning, and intraspecific interactions on thermal tolerance of coral recruits and how we can leverage this knowledge to enhance coral propagation. My collaborators and I used approaches ranging from field observations to confocal microscopy and energetics and phsyiology. Seeing a need for scientists to also be translators and educators, I conducted research in science education to understand how participation in research influences science identity development.
Outside the lab, I enjoy hiking, mountain biking, fly fishing, and exploring with my two dogs the Pacific Northwest.
I am currently working as a Cooperative Institute for Climate, Ocean, & Ecosystem Studies (CICOES) Fellow in the Roberts Lab in collaboration with Mackenzie Gavery at the NOAA Northwest Fisheries Science Center and Ryan Crim at the Puget Sound Restoration Fund to assess the potential impacts of ocean acidification (OA) on native Pacific Littleneck Clams and naturalized Manila Clams. Specifically, we will determine the physiological impact of OA conditions on adult clams and determine how this impacts reproduction by assessing reproductive success as well as gene expression in gametes. Larvae collected from clams will also be used to determine transgenerational effects on the capacity of larvae to tolerate the same OA conditions by assessing growth performance and gene expression. Results from these experiments are intentionally aimed at expanding the portfolio of options for Puget Sound shellfish growers, and I will be involved in surveying growers to determine the applicability of the methods we develop on clam production. I am also active in a separate project to identify and then silence genes expressed in the development of germ line cells in shellfish embryos, with the ultimate goal of establishing a method for producing sterile shellfish for use in aquaculture.
I have a background in comparative physiology having completed a dissertation comparing the molecular response of two species of tilapia to increased environmental salinity levels. This research including transcriptomic and proteomic analysis of the main tissues responsible for ion balance (gill and kidney). This work was also aimed at aiding aquaculture producers by allowing them to use partial seawater in tilapia ponds and reduce the use of freshwater, especially in areas which have scarce freshwater resources.
When not doing research, I am an avid hiker, and I enjoy a number of hobbies including woodworking, playing musical instruments, baking, and playing with my dogs Nimbus and Pepita.
Postdoctoral Research Associates
Hana Ra (2020)
Ronit (pre-college) (2019)
Alanna Greene (2019)
Mrunmayee Manohar Shete (2015) notebook
Katie Jackson UW SAFS (2015)
Joelle Blaise UW SAFS (2014)
Harry Podschwit; UW notebook
Manel Khan; UW notebook
Lexie Miller; UW FISH499 paper
Zac Halls; UW notebook
Amanda Davis FISH499; UW paper
Christina Miller FISH498; UW notebook
Rony Thi; UW notebook
Kevin Jeong; UW FISH499 notebook
Tatyana Marushchak; UW Chemistry project
Juliann Clark; UW project
Tushara Saint Vitus; UW SAFS project
Lindsay Braun; Santa Clara University project
Mairead Bermingham; N Univ of Ireland, Cork project
Zachary Schiller; Tufts University project
Javier A. Rodriguez-Casariego; Florida International University
Roberto Carlos Arredondo Espinoza; Mexico
Marcos Espinel; Universidad Científica del Sur, Peru
Dr. Cristian Gallardo; University of Concepcion
Dr. Hollie Putnam; Research Associate
Jose Angel Hidalgo de la Toba; CIBNOR PhD student
New method for determining size at age in individuals to inform geoduck population models.
Timothy Green; University of Queensland
Adelaide Rhodes; Visiting Scholar