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School of Aquatic and Fishery Sciences | University of Washington

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Roberts Lab

Publication

9 Ways to Make Papers a Little More Open and Reproducible

9 Ways to Make Papers a Little More Open and Reproducible

While we can certainly improve on our efforts to make our work open and reproducible, we have published a series of products over the last few years that have had associated code/data repositories that have accompanied the narratives (aka manuscripts).

admin October 3, 2015October 4, 2015 Publication, Research Read more

Sea Star Wasting Disease: How does the host arm itself?

We now know just a little more about sea star wasting disease, particularly as it pertains to the host response. Today a paper looking at gene expression in infected sea stars (Pycnopodia helianthoides) using RNA-seq is published in PLoS ONE:

admin July 15, 2015July 16, 2015 Publication Read more

Discoveries of FHL EIMD Course Published

Discoveries of FHL EIMD Course Published

This week the manuscript “Development of Genomic Resources for a thraustochytrid Pathogen and Investigation of Temperature Influences on Gene Expression” was published.   Photo: Students in FHL EIMD course hard at work on bioinformatic analysis of transcriptome and genomic data

admin September 23, 2013September 23, 2013 News, Publication, Teaching Read more

Shotgun proteomics and the Pacific oyster

Shotgun proteomics and the Pacific oyster

Emma’s paper on shotgun proteomics was recently  published where she describes the value of shotgun proteomics in physiological studies. Timmins-Schiffman EB* Nunn BL, Goodlett DR and Roberts SB. (2013) Shotgun proteomics as a viable approach for biological discovery in the

admin May 20, 2013May 20, 2013 News, Publication Read more

Genomic resource development for shellfish of conservation concern

Genomic resource development for shellfish of conservation concern

We recently published the sequenced transcriptomes (suite of expressed genes) of pinto abalone and Olympia oyster in the journal Molecular Ecology Resources. The focus of this study was to identify genomic resources to aid conservation efforts for these two native

genefish January 3, 2013 News, Publication Read more
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Around the web

  • Post-doc Position: Reproductive Genomics
  • Bioanalyzer – Tanner Crab RNA Isolated with RNeasy Plus Mini Kit
  • RNA Cleanup – Tanner Crab RNA
  • RNA Isolation – Tanner Crab Hemolymph Using RNeasy Plus Mini Kit
  • August 2018 goals
  • Mox – Over quota: Olympia oyster genome annotation progress (using Maker 2.31.10)
  • RNA Cleanup – Tanner Crab RNA Pools
  • July 18 2018, O. angasi conditioning

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Ocean Acidification Research Notes

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