A B C D E F G H I L M N O P R S T V W Y

A

actionPerformed(ActionEvent) - Method in class edu.washington.NVisF.viewer.RotationControlPanel

processes button clicks.

addObjectGroup(ObjectGroup, boolean) - Method in class edu.washington.NVisF.viewer.PlotEnvironment

Adds the specified ObjectGroup to a private list of known ObjectGroups.

addObjectInfo(ObjectInfo) - Method in class edu.washington.NVisF.dataIO.TypeInfo

Adds an ObjectInfo object to this TypeInfo.

AlphaColoringStrategy - class edu.washington.NVisF.plotter.AlphaColoringStrategy.

An AlphaColoringStrategy uses data from a PlotCommand to compute alpha values for a set of data objects.

AlphaColoringStrategy() - Constructor for class edu.washington.NVisF.plotter.AlphaColoringStrategy

AppearanceSerializer - class edu.washington.NVisF.animator.AppearanceSerializer.

This class provides static methods to write an Appearance object to file and to reconstruct the Appearance from a previously written file.

AppearanceSerializer() - Constructor for class edu.washington.NVisF.animator.AppearanceSerializer

AppearanceStrategy - class edu.washington.NVisF.plotter.AppearanceStrategy.

An Appearance is a Java3D object that packages references to several different objects describing how to render a given 3D object.

AppearanceStrategy() - Constructor for class edu.washington.NVisF.plotter.AppearanceStrategy

B

BinaryDataFileReader - class edu.washington.NVisF.dataIO.BinaryDataFileReader.

BinaryDataFileReader extends DataReader to support readers of binary data files, providing simple implementations of the connection and meta-info methods.

BinaryDataFileReader() - Constructor for class edu.washington.NVisF.dataIO.BinaryDataFileReader

blue - Static variable in class edu.washington.NVisF.plotter.ColoringStrategy

buildObjectGroup() - Method in class edu.washington.NVisF.plotter.PlotCommand

builds an ObjectGroup from the 3D objects created by the defined PlotStrategy and installs the result in this PlotCommand.

C

closeConnection() - Method in class edu.washington.NVisF.dataIO.DataReader

does whatever work is needed to close the connection

closeConnection() - Method in class edu.washington.NVisF.dataIO.BinaryDataFileReader

ColoringStrategy - class edu.washington.NVisF.plotter.ColoringStrategy.

A ColoringStrategy defines how to construct colors from the available data.

ColoringStrategy() - Constructor for class edu.washington.NVisF.plotter.ColoringStrategy

Creates a new ColoringStrategy using the default color.

ColoringStrategy(Color3f) - Constructor for class edu.washington.NVisF.plotter.ColoringStrategy

Creates a new ColoringStrategy using the specified color.

CompressedMovieIO - class edu.washington.NVisF.animator.CompressedMovieIO.

The CompressedMovieIO object reads and writes NVisF movies (that is, an array of ObjectGroup objects) using the Compressed Geometry utilities provided in the com.sun.j3d.utils.compression package.

CompressedMovieIO() - Constructor for class edu.washington.NVisF.animator.CompressedMovieIO

D

DarkParticles - class edu.washington.NVisF.dataIO.tfr.DarkParticles.

This class reads the dark particle data from a Tipsy binary file.

DarkParticles(DataInputStream, int, int) - Constructor for class edu.washington.NVisF.dataIO.tfr.DarkParticles

DataField - class edu.washington.NVisF.dataIO.DataField.

A DataField object represents meta-info regarding a field for a particular data object.

DataField(String, int) - Constructor for class edu.washington.NVisF.dataIO.DataField

Constructs a DataField from the given name and type, where varType is one of the constants defined in this class.

DataIOException - exception edu.washington.NVisF.dataIO.DataIOException.

This class is the superclass of all exceptions within the dataIO package.

DataIOException() - Constructor for class edu.washington.NVisF.dataIO.DataIOException

DataIOException(String) - Constructor for class edu.washington.NVisF.dataIO.DataIOException

Initializes a new DataIOException with the given message.

DataReader - class edu.washington.NVisF.dataIO.DataReader.

The abstract DataReader class defines functions for query-based access to arbitrary sources of physical data.

DataReader() - Constructor for class edu.washington.NVisF.dataIO.DataReader

DEFAULT_COLOR - Static variable in class edu.washington.NVisF.plotter.ColoringStrategy

The default color, currently equal to white.

DEFAULT_PLOT_STRATEGY - Static variable in class edu.washington.NVisF.plotter.PlotManager

name of the default PlotStrategy.

density - Variable in class edu.washington.NVisF.dataIO.tfr.GasParticles

E

edu.washington.NVisF.animator - package edu.washington.NVisF.animator

edu.washington.NVisF.dataIO - package edu.washington.NVisF.dataIO

edu.washington.NVisF.dataIO.tfr - package edu.washington.NVisF.dataIO.tfr

edu.washington.NVisF.plotter - package edu.washington.NVisF.plotter

edu.washington.NVisF.viewer - package edu.washington.NVisF.viewer

eps - Variable in class edu.washington.NVisF.dataIO.tfr.StarParticles

eps - Variable in class edu.washington.NVisF.dataIO.tfr.DarkParticles

F

fillWithSingleColor(int) - Method in class edu.washington.NVisF.plotter.ColoringStrategy

returns a Color3f[] of length numObjects where every color is the same as this ColoringStrategy's defined color.

G

GasParticles - class edu.washington.NVisF.dataIO.tfr.GasParticles.

This class reads the gas/SPH particle data from a Tipsy binary file.

GasParticles(DataInputStream, int, int) - Constructor for class edu.washington.NVisF.dataIO.tfr.GasParticles

getAlphaColoringStrategy() - Method in class edu.washington.NVisF.plotter.LineCloudStrategy

returns the AlphaColoringStrategy that provides alpha values for this PlotStrategy.

getAlphaColoringStrategy() - Method in class edu.washington.NVisF.plotter.PointCloudStrategy

returns the AlphaColoringStrategy that provides alpha values for this PlotStrategy.

getAlphaValues(PlotCommand) - Method in class edu.washington.NVisF.plotter.AlphaColoringStrategy

returns the appropriate alpha value for each data object available from the input PlotCommand command according to the algorithm for this AlphaColoringStrategy.

getAppearance() - Method in class edu.washington.NVisF.plotter.ObjectGroup

If this ObjectGroup was constructed with an Appearance, a reference to that Appearance is returned; otherwise returns null.

getAppearance(PlotCommand) - Method in class edu.washington.NVisF.plotter.AppearanceStrategy

returns an Appearance object appropriate for the given PlotCommand.

getAppearance(PlotCommand) - Method in class edu.washington.NVisF.plotter.PlotStrategy

Returns an Appearance object appropriate for the supplied PlotCommand, according to the algorithm defined in this PlotStrategy.

getAppearance(PlotCommand) - Method in class edu.washington.NVisF.plotter.LineCloudStrategy

returns an Appearance object appropriate to the given PlotCommand.

getAppearance(PlotCommand) - Method in class edu.washington.NVisF.plotter.PointCloudStrategy

returns an Appearance object appropriate to the given PlotCommand.

getAppearance(PlotCommand) - Method in class edu.washington.NVisF.plotter.PointCloudAppearanceStrategy

Returns an Appearance object with default values except for the pre-defined pixel size and antialiasing.

getAppearanceStrategy() - Method in class edu.washington.NVisF.plotter.LineCloudStrategy

returns the AppearanceStrategy that provides Appearance objects for this PlotStrategy.

getAppearanceStrategy() - Method in class edu.washington.NVisF.plotter.PointCloudStrategy

returns the AppearanceStrategy that provides Appearance objects for this PlotStrategy.

getBranchGroup() - Method in class edu.washington.NVisF.plotter.ObjectGroup

returns the top level BranchGroup of this ObjectGroup.

getColor() - Method in class edu.washington.NVisF.plotter.ColoringStrategy

returns this ColoringStrategy's defined color.

getColoringStrategy() - Method in class edu.washington.NVisF.plotter.LineCloudStrategy

returns the ColoringStrategy that provides colors for this PlotStrategy.

getColoringStrategy() - Method in class edu.washington.NVisF.plotter.PointCloudStrategy

returns the ColoringStrategy that provides colors for this PlotStrategy.

getColorNameMap() - Static method in class edu.washington.NVisF.plotter.ColoringStrategy

Returns a Map between names of colors and the colors.

getColors(PlotCommand) - Method in class edu.washington.NVisF.plotter.ColoringStrategy

Returns an array containing one color for each data object according to the particular algorithm of this ColoringStrategy.

getColors(PlotCommand) - Method in class edu.washington.NVisF.plotter.SandColoringStrategy

getColors(PlotCommand) - Method in class edu.washington.NVisF.plotter.SSColoringStrategy

getColors(PlotCommand, Color3f[], int) - Method in class edu.washington.NVisF.plotter.AlphaColoringStrategy

given a input Color3f array, constructs a Color4f array by calling getAlphaValues and using makeColor4fFromColor3f for each color.

getCount() - Method in class edu.washington.NVisF.plotter.PlotCommand

returns dataReader.getCount(predicate)

getCount(String) - Method in class edu.washington.NVisF.dataIO.DataReader

returns the number of objects that satisfy the given predicate.

getCount(String) - Method in class edu.washington.NVisF.dataIO.BinaryDataFileReader

getCount(String) - Method in class edu.washington.NVisF.dataIO.SandPileReader

getCount(String) - Method in class edu.washington.NVisF.dataIO.SSFileReader

getCount(String) - Method in class edu.washington.NVisF.dataIO.TipsyFileReader

getDataFieldNames() - Method in class edu.washington.NVisF.dataIO.ObjectInfo

Returns the names of all data fields for this data object.

getDataFieldNames() - Method in class edu.washington.NVisF.dataIO.TypeInfo

Returns the names of every data field defined for any data object.

getDataFieldNames(String) - Method in class edu.washington.NVisF.dataIO.TypeInfo

Returns the names of all data fields defined for the data object with the given name.

getDataFields() - Method in class edu.washington.NVisF.dataIO.ObjectInfo

getDataReader() - Method in class edu.washington.NVisF.plotter.PlotCommand

returns a reference to this PlotCommand's DataReader.

getFieldName() - Method in class edu.washington.NVisF.plotter.PositionStrategy

Returns the name of the data field used as positions.

getGeometries() - Method in class edu.washington.NVisF.plotter.ObjectGroup

If this ObjectGroup was constructed with Geometry objects, a reference to an array of those Geometrys is returned; otherwise returns null.

getGeometryArrays(PlotCommand) - Method in class edu.washington.NVisF.plotter.PlotStrategy

Returns an array of GeometryArray objects containing the geometry component of the 3D representation of the data defined in the supplied PlotCommand, according to the algorithm defined in this PlotStrategy.

getGeometryArrays(PlotCommand) - Method in class edu.washington.NVisF.plotter.LineCloudStrategy

builds the GeometryArray[] for the specified PlotCommand.

getGeometryArrays(PlotCommand) - Method in class edu.washington.NVisF.plotter.PointCloudStrategy

builds the GeometryArray[] for the specified PlotCommand.

getGeometryArrays(PlotCommand) - Method in class edu.washington.NVisF.plotter.SplitPointCloudStrategy

getKnownColors() - Static method in class edu.washington.NVisF.plotter.ColoringStrategy

Returns a List of Strings containing the names of all known colors.

getMultiColors(PlotCommand, int) - Method in class edu.washington.NVisF.plotter.ColoringStrategy

Returns an array containing vCount colors for each data object.

getName() - Method in class edu.washington.NVisF.dataIO.ObjectInfo

Returns the name of this data object.

getName() - Method in class edu.washington.NVisF.dataIO.DataField

Returns the name of this data field.

getObjectGroup() - Method in class edu.washington.NVisF.plotter.PlotCommand

returns the ObjectGroup for this PlotCommand.

getObjectInfo() - Method in class edu.washington.NVisF.dataIO.TypeInfo

Returns all known ObjectInfo objects.

getObjectInfo() - Method in class edu.washington.NVisF.dataIO.tfr.TipsyParticles

getObjectInfo(String) - Method in class edu.washington.NVisF.dataIO.TypeInfo

Returns the ObjectInfo object with the given name.

getObjectNames() - Method in class edu.washington.NVisF.dataIO.TypeInfo

Returns the names of all known data object types.

getPlotStrategy() - Method in class edu.washington.NVisF.plotter.PlotCommand

returns a reference to this PlotCommand's PlotStrategy.

getPlotStrategy(String) - Method in class edu.washington.NVisF.plotter.PlotManager

Returns the PlotStrategy mapped to the name provided.

getPositionStrategy() - Method in class edu.washington.NVisF.plotter.LineCloudStrategy

returns the PositionStrategy that provides coordinates for this PlotStrategy.

getPositionStrategy() - Method in class edu.washington.NVisF.plotter.PointCloudStrategy

returns the PositionStrategy that provides coordinates for this PlotStrategy.

getPredicate() - Method in class edu.washington.NVisF.plotter.PlotCommand

returns a reference to this PlotCommand's predicate.

getScalar(String) - Method in class edu.washington.NVisF.dataIO.tfr.TipsyParticles

getScalar(String) - Method in class edu.washington.NVisF.plotter.PlotCommand

returns dataReader.getScalar(predicate,dataField)

getScalar(String, String) - Method in class edu.washington.NVisF.dataIO.DataReader

returns an array of floats containing the specified scalar field element for all data objects that satisfy the given predicate.

getScalar(String, String) - Method in class edu.washington.NVisF.dataIO.BinaryDataFileReader

getScalar(String, String) - Method in class edu.washington.NVisF.dataIO.SandPileReader

getScalar(String, String) - Method in class edu.washington.NVisF.dataIO.SSFileReader

getScalar(String, String) - Method in class edu.washington.NVisF.dataIO.TipsyFileReader

getScalarDataFieldNames() - Method in class edu.washington.NVisF.dataIO.ObjectInfo

Returns the names of all scalar data fields for this data object.

getScalarDataFieldNames() - Method in class edu.washington.NVisF.dataIO.TypeInfo

Returns the names of every scalar data field defined for any data object.

getScalarDataFieldNames(String) - Method in class edu.washington.NVisF.dataIO.TypeInfo

Returns the names of all scalar data fields defined for the data object with the given name.

getShape3D(PlotCommand, Geometry) - Method in class edu.washington.NVisF.plotter.AppearanceStrategy

constructs and returns a Shape3D object by combining the given Geometry object with the result from AppearanceStrategy.getAppearance(edu.washington.NVisF.plotter.PlotCommand).

getShape3Ds() - Method in class edu.washington.NVisF.plotter.ObjectGroup

If this ObjectGroup was constructed with a Shape3D or its components, returns a reference to that Shape3D; otherwise returns null.

getShape3Ds(GeometryArray[], Appearance) - Method in class edu.washington.NVisF.plotter.PlotStrategy

Returns an array of Shape3D objects contrusted from the provided array of geometry objects and the provided Appearance object.

getShape3Ds(PlotCommand) - Method in class edu.washington.NVisF.plotter.PlotStrategy

Returns an array of Shape3D objects containing the 3D representation of the data defined in the supplied PlotCommand by combining the results of the PlotStrategy.getGeometryArrays(edu.washington.NVisF.plotter.PlotCommand) and PlotStrategy.getAppearance(edu.washington.NVisF.plotter.PlotCommand) methods.

getShape3Ds(PlotCommand, GeometryArray[]) - Method in class edu.washington.NVisF.plotter.PlotStrategy

Returns an array of Shape3D objects constructed from the provided array of GeometryArray objects by adding an Appearance object from the PlotStrategy.getAppearance(edu.washington.NVisF.plotter.PlotCommand) method.

getSSColorDef() - Static method in class edu.washington.NVisF.plotter.SSColoringStrategy

Returns a Map between Integer keys and defined colors.

getTransformGroup() - Method in class edu.washington.NVisF.plotter.ObjectGroup

returns the TransformGroup above the wrapped structure.

getTypeInfo() - Method in class edu.washington.NVisF.dataIO.DataReader

retrieves a description of the data available from this source as a TypeInfo object.

getTypeInfo() - Method in class edu.washington.NVisF.dataIO.BinaryDataFileReader

getvarType() - Method in class edu.washington.NVisF.dataIO.DataField

Returns the type of this data field.

getVector(String) - Method in class edu.washington.NVisF.dataIO.tfr.TipsyParticles

getVector(String) - Method in class edu.washington.NVisF.plotter.PlotCommand

returns dataReader.getVector(predicate,dataField)

getVector(String, String) - Method in class edu.washington.NVisF.dataIO.DataReader

returns an array of arrays containing the specified vector field element for all data objects that satisfy the given predicate.

getVector(String, String) - Method in class edu.washington.NVisF.dataIO.BinaryDataFileReader

getVector(String, String) - Method in class edu.washington.NVisF.dataIO.SandPileReader

getVector(String, String) - Method in class edu.washington.NVisF.dataIO.SSFileReader

getVector(String, String) - Method in class edu.washington.NVisF.dataIO.TipsyFileReader

getVectorDataFieldNames() - Method in class edu.washington.NVisF.dataIO.ObjectInfo

Returns the names of all vector data fields for this data object.

getVectorDataFieldNames() - Method in class edu.washington.NVisF.dataIO.TypeInfo

Returns the names of every vector data field defined for any data object.

getVectorDataFieldNames(String) - Method in class edu.washington.NVisF.dataIO.TypeInfo

Returns the names of all vector data fields defined for the data object with the given name.

getVectors(PlotCommand) - Method in class edu.washington.NVisF.plotter.VectorStrategy

returns a float[][] of dimensions N x m where N is the number of data objects and m is the dimensionality of the vector (usually 3).

getVectorStrategy() - Method in class edu.washington.NVisF.plotter.LineCloudStrategy

returns the VectorStrategy that provides vector endpoints for this PlotStrategy.

getVertexFormat() - Method in class edu.washington.NVisF.plotter.LineCloudStrategy

returns the vertexFormat used to construct the GeometryArray.

getVertexFormat() - Method in class edu.washington.NVisF.plotter.PointCloudStrategy

returns the vertexFormat used to construct the GeometryArray.

green - Static variable in class edu.washington.NVisF.plotter.ColoringStrategy

H

handleException(Exception) - Static method in class edu.washington.NVisF.plotter.PlotterMessageHandler

does something with the supplied Exception; is null-safe

handleMessage(String) - Static method in class edu.washington.NVisF.plotter.PlotterMessageHandler

does something with the provided message for the user

hsmooth - Variable in class edu.washington.NVisF.dataIO.tfr.GasParticles

I

initConnection(InputStream) - Method in class edu.washington.NVisF.dataIO.BinaryDataFileReader

initConnection(InputStream) - Method in class edu.washington.NVisF.dataIO.SandPileReader

initConnection(InputStream) - Method in class edu.washington.NVisF.dataIO.SSFileReader

initConnection(InputStream) - Method in class edu.washington.NVisF.dataIO.TipsyFileReader

initConnection(String) - Method in class edu.washington.NVisF.dataIO.DataReader

initiates a connection to the data source represented by the given String.

initConnection(String) - Method in class edu.washington.NVisF.dataIO.BinaryDataFileReader

initConnection(URL) - Method in class edu.washington.NVisF.dataIO.DataReader

initiates a connection to the data source represented by the given URL.

initConnection(URL) - Method in class edu.washington.NVisF.dataIO.BinaryDataFileReader

initialize() - Method in class edu.washington.NVisF.animator.SwitchMovieBehavior

initUniverse() - Method in class edu.washington.NVisF.viewer.PlotEnvironment

Calls initUniverse(int viewerSize) with a default viewer size of 512x512.

initUniverse(int) - Method in class edu.washington.NVisF.viewer.PlotEnvironment

This method sets up the viewer and should be called before accessing any of the other methods.

Instance() - Static method in class edu.washington.NVisF.plotter.PlotterMessageHandler

returns the single instance of this class

isConnectionOpen() - Method in class edu.washington.NVisF.dataIO.DataReader

tests whether an active connection exists

isConnectionOpen() - Method in class edu.washington.NVisF.dataIO.BinaryDataFileReader

L

LineCloudStrategy - class edu.washington.NVisF.plotter.LineCloudStrategy.

A LineCloudStrategy provides a strategy for representing a 3D vector field as a single 3D visualization object where the vector for each data object is represented as a line starting from the object's position.

LineCloudStrategy() - Constructor for class edu.washington.NVisF.plotter.LineCloudStrategy

Constructs a simple LineCloudStrategy with a default PositionStrategy, VectorStrategy, and AppearanceStrategy.

LineCloudStrategy(PositionStrategy, VectorStrategy, ColoringStrategy, AlphaColoringStrategy, AppearanceStrategy) - Constructor for class edu.washington.NVisF.plotter.LineCloudStrategy

Constructs a LineCloudStrategy that will use the specified components for its positions, vector enpoints, colors, alpha values, and Appearance.

LineCloudStrategy(PositionStrategy, VectorStrategy, ColoringStrategy, AppearanceStrategy) - Constructor for class edu.washington.NVisF.plotter.LineCloudStrategy

Constructs a LineCloudStrategy that will use the specified components for its positions, vector enpoints, colors, and Appearance.

loadData(String, String[]) - Method in class edu.washington.NVisF.dataIO.DataReader

instructs this DataReader to gather and store the requested data for later access.

loadData(String, String[]) - Method in class edu.washington.NVisF.dataIO.BinaryDataFileReader

loadData(String, String[]) - Method in class edu.washington.NVisF.dataIO.SandPileReader

loadData(String, String[]) - Method in class edu.washington.NVisF.dataIO.SSFileReader

loadData(String, String[]) - Method in class edu.washington.NVisF.dataIO.TipsyFileReader

M

makeColor4fFromColor3f(Color3f, float) - Static method in class edu.washington.NVisF.plotter.AlphaColoringStrategy

Constructs a Color4f from the provided Color3f and alphaValue.

makeMovie(ObjectGroup[], Alpha) - Method in class edu.washington.NVisF.animator.SwitchMovie

Attaches the supplied movie frames to the Switch objects and sets up the SwitchMovieBehavior object.

makeMovieFrames(PlotCommand, String) - Static method in class edu.washington.NVisF.animator.MovieMaker

Constructs a set of movie frames from the supplied PlotCommand and a file which contains the names of the data sources.

makeMovieFrames(PlotCommand, String[]) - Static method in class edu.washington.NVisF.animator.MovieMaker

Constructs a set of movie frames from the supplied PlotCommand and the String array, dataSources, containing the names of data sources as appropriate arguments to the DataReader.initConnection(String) method.

mass - Variable in class edu.washington.NVisF.dataIO.tfr.StarParticles

mass - Variable in class edu.washington.NVisF.dataIO.tfr.GasParticles

mass - Variable in class edu.washington.NVisF.dataIO.tfr.DarkParticles

maxObjectGroups - Static variable in class edu.washington.NVisF.viewer.PlotEnvironment

metals - Variable in class edu.washington.NVisF.dataIO.tfr.StarParticles

metals - Variable in class edu.washington.NVisF.dataIO.tfr.GasParticles

MouseRotateLocked - class edu.washington.NVisF.viewer.MouseRotateLocked.

This class is a simple extension of the MouseRotate class in the sun utility packages.

MouseRotateLocked() - Constructor for class edu.washington.NVisF.viewer.MouseRotateLocked

Creates a rotate behavior given the transform group to act upon.

MouseRotateLocked(int) - Constructor for class edu.washington.NVisF.viewer.MouseRotateLocked

Usual constructor for this rotation behavior.

MovieIO - class edu.washington.NVisF.animator.MovieIO.

A MovieIO object defines methods for writing a movie (consisting of an array of ObjectGroup objects) to file and reading such a pre-written movie.

MovieIO() - Constructor for class edu.washington.NVisF.animator.MovieIO

MovieMaker - class edu.washington.NVisF.animator.MovieMaker.

The MovieMaker class provides a simple algorithm for constructing a set of 3D scenes from a set of data sources, each of which contains the data for one scene.

MovieMaker() - Constructor for class edu.washington.NVisF.animator.MovieMaker

N

nbodies - Variable in class edu.washington.NVisF.dataIO.tfr.TipsyHeader

ndark - Variable in class edu.washington.NVisF.dataIO.tfr.TipsyHeader

ndim - Variable in class edu.washington.NVisF.dataIO.tfr.TipsyHeader

NoConnectionException - exception edu.washington.NVisF.dataIO.NoConnectionException.

A NoConnectionException is thrown when an attempt is made to access data, but there is no valid connection to the data source.

NoConnectionException() - Constructor for class edu.washington.NVisF.dataIO.NoConnectionException

NoConnectionException(String) - Constructor for class edu.washington.NVisF.dataIO.NoConnectionException

Initializes a new NoConnectionException with the given message.

nsph - Variable in class edu.washington.NVisF.dataIO.tfr.TipsyHeader

nstar - Variable in class edu.washington.NVisF.dataIO.tfr.TipsyHeader

O

ObjectGroup - class edu.washington.NVisF.plotter.ObjectGroup.

An ObjectGroup wraps a 3D scene that can be added to a viewer.

ObjectGroup(Geometry, Appearance) - Constructor for class edu.washington.NVisF.plotter.ObjectGroup

Constructs a new ObjectGroup from the provided Geometry and Appearance.

ObjectGroup(Group) - Constructor for class edu.washington.NVisF.plotter.ObjectGroup

Constructs a new ObjectGroup that wraps the supplied Group.

ObjectGroup(Node[]) - Constructor for class edu.washington.NVisF.plotter.ObjectGroup

Constructs a new ObjectGroup that wraps the supplied Nodes.

ObjectGroup(Shape3D) - Constructor for class edu.washington.NVisF.plotter.ObjectGroup

Constructs a new ObjectGroup from the provided Shape3D object.

ObjectGroup(Shape3D[]) - Constructor for class edu.washington.NVisF.plotter.ObjectGroup

Constructs a new ObjectGroup from the provided Shape3D objects.

ObjectInfo - class edu.washington.NVisF.dataIO.ObjectInfo.

The ObjectInfo class provides meta-info regarding the data available for a particular type of data object.

ObjectInfo(String, DataField[]) - Constructor for class edu.washington.NVisF.dataIO.ObjectInfo

Constructs an ObjectInfo for a data object with the given name and set of DataFields.

OpenConnectionException - exception edu.washington.NVisF.dataIO.OpenConnectionException.

An OpenConnectionException is thrown when an attempt is made to initialize a new connection when one already exists.

OpenConnectionException() - Constructor for class edu.washington.NVisF.dataIO.OpenConnectionException

OpenConnectionException(String) - Constructor for class edu.washington.NVisF.dataIO.OpenConnectionException

Initializes a new OpenConnectionException with the given message.

P

parseObjectFromPredicate(String) - Method in class edu.washington.NVisF.plotter.PlotCommand

extracts the object name from the given predicate.

phi - Variable in class edu.washington.NVisF.dataIO.tfr.StarParticles

phi - Variable in class edu.washington.NVisF.dataIO.tfr.GasParticles

phi - Variable in class edu.washington.NVisF.dataIO.tfr.DarkParticles

PlotCommand - class edu.washington.NVisF.plotter.PlotCommand.

A PlotCommand encapsulates a request to represent a certain set of data with a 3D representation suitable for viewing.

PlotCommand() - Constructor for class edu.washington.NVisF.plotter.PlotCommand

Constructs an empty PlotCommand.

PlotCommand(DataReader, String) - Constructor for class edu.washington.NVisF.plotter.PlotCommand

Constructs a PlotCommand referencing the specified DataReader and predicate, but with no defined PlotStrategy.

PlotCommand(DataReader, String, PlotManager) - Constructor for class edu.washington.NVisF.plotter.PlotCommand

Constructs a PlotCommand referencing the specified DataReader and predicate.

PlotCommand(DataReader, String, PlotStrategy) - Constructor for class edu.washington.NVisF.plotter.PlotCommand

Constructs a PlotCommand referencing the specified DataReader, predicate, and PlotStrategy.

PlotEnvironment - class edu.washington.NVisF.viewer.PlotEnvironment.

The PlotEnvironment class provides the viewer that displays 3D objects and various utility methods to aid viewing.

PlotEnvironment() - Constructor for class edu.washington.NVisF.viewer.PlotEnvironment

PlotManager - class edu.washington.NVisF.plotter.PlotManager.

A PlotManager stores PlotStrategy objects so that they can be retrieved by name.

PlotManager() - Constructor for class edu.washington.NVisF.plotter.PlotManager

Creates a new PlotManager with a plain PointCloudStrategy as its default strategy.

PlotManager(PlotStrategy) - Constructor for class edu.washington.NVisF.plotter.PlotManager

Creates a new PlotManager with the specified PlotStrategy as its default strategy.

PlotStrategy - class edu.washington.NVisF.plotter.PlotStrategy.

This is the abstract base class for all plot strategies.

PlotStrategy() - Constructor for class edu.washington.NVisF.plotter.PlotStrategy

PlotterMessageHandler - class edu.washington.NVisF.plotter.PlotterMessageHandler.

The PlotterMessageHandler provides static methods to handle exceptions and messages generated by plotting classes.

PointCloudAppearanceStrategy - class edu.washington.NVisF.plotter.PointCloudAppearanceStrategy.

This class constructs and returns an Appearance object appropriate for use with a PointCloudStrategy.

PointCloudAppearanceStrategy() - Constructor for class edu.washington.NVisF.plotter.PointCloudAppearanceStrategy

Constructs a PointCloudAppearanceStrategy that will return an Appearance with default values.

PointCloudAppearanceStrategy(float, boolean) - Constructor for class edu.washington.NVisF.plotter.PointCloudAppearanceStrategy

Constructs a PointCloudAppearanceStrategy that will return an Appearance with the specified pixel size and antialiasing.

PointCloudAppearanceStrategy(PointAttributes) - Constructor for class edu.washington.NVisF.plotter.PointCloudAppearanceStrategy

Constructs a PointCloudAppearanceStrategy that will return an Appearance referencing the provided PointAttributes object.

PointCloudStrategy - class edu.washington.NVisF.plotter.PointCloudStrategy.

A PointCloudStrategy defines a strategy for representing 3D data as a single 3D visualization object where each data object is rendered as a single pixel.

PointCloudStrategy() - Constructor for class edu.washington.NVisF.plotter.PointCloudStrategy

Constructs a simple PointCloudStrategy with a default PositionStrategy and AppearanceStrategy.

PointCloudStrategy(PositionStrategy, ColoringStrategy, AlphaColoringStrategy, AppearanceStrategy) - Constructor for class edu.washington.NVisF.plotter.PointCloudStrategy

Constructs a PointCloudStrategy that will use the specified components for its positions, colors, alpha values, and Appearance.

PointCloudStrategy(PositionStrategy, ColoringStrategy, AppearanceStrategy) - Constructor for class edu.washington.NVisF.plotter.PointCloudStrategy

Constructs a PointCloudStrategy that will use the specified components for its positions, colors, and Appearance.

PolygonStrategy - class edu.washington.NVisF.plotter.PolygonStrategy.

A PolygonStrategy provides the coordinates of the vertices of a polygon used to render an individual data object.

PolygonStrategy() - Constructor for class edu.washington.NVisF.plotter.PolygonStrategy

position - Variable in class edu.washington.NVisF.dataIO.tfr.StarParticles

position - Variable in class edu.washington.NVisF.dataIO.tfr.GasParticles

position - Variable in class edu.washington.NVisF.dataIO.tfr.DarkParticles

PositionStrategy - class edu.washington.NVisF.plotter.PositionStrategy.

A PositionStrategy defines how to construct 3-D positions from the data.

PositionStrategy() - Constructor for class edu.washington.NVisF.plotter.PositionStrategy

Constructs a new PositionStrategy that will use the "position" field of the data for its positions.

PositionStrategy(String) - Constructor for class edu.washington.NVisF.plotter.PositionStrategy

Constructs a new PositionStrategy that will use the specified field of the data for its positions.

processStimulus(Enumeration) - Method in class edu.washington.NVisF.animator.SwitchMovieBehavior

processStimulus(Enumeration) - Method in class edu.washington.NVisF.viewer.MouseRotateLocked

Overrides MouseRotate.processStimulus(java.util.Enumeration).

putPlotStrategy(String, PlotStrategy) - Method in class edu.washington.NVisF.plotter.PlotManager

Adds the given PlotStrategy to this registry under the supplied name.

R

readAppearance(ObjectInputStream) - Static method in class edu.washington.NVisF.animator.AppearanceSerializer

Read an Appearance object from the given ObjectInputStream.

readAppearance(String) - Static method in class edu.washington.NVisF.animator.AppearanceSerializer

Read an Appearance object from the file with the given name, with a ".apr" extension added if not already present.

readLines(String, String) - Static method in class edu.washington.NVisF.animator.MovieMaker

Utility method for parsing a text file into a String[] with each line of the file stored in one String, ignoring lines that start with the supplied commentString.

readMovie(String) - Method in class edu.washington.NVisF.animator.MovieIO

Reads a set of ObjectGroups from file.

readMovie(String) - Method in class edu.washington.NVisF.animator.CompressedMovieIO

Reconstructs the movie frames written to file by a previous call to CompressedMovieIO.writeMovie(edu.washington.NVisF.plotter.ObjectGroup[], java.lang.String).

readMovie(String) - Method in class edu.washington.NVisF.animator.SimpleMovieIO

readMovieFrames(String) - Static method in class edu.washington.NVisF.animator.MovieMaker

Reads movie frames from the file with the supplied name by forwarding the request to the installed MovieIO object.

red - Static variable in class edu.washington.NVisF.plotter.ColoringStrategy

registerMovie(PlotEnvironment) - Method in class edu.washington.NVisF.animator.SwitchMovie

attaches the stored movie to the supplied PlotEnvironment.

removeObjectGroup(int) - Method in class edu.washington.NVisF.viewer.PlotEnvironment

removes the ObjectGroup specified by index from the private list.

resetRotation() - Method in class edu.washington.NVisF.viewer.PlotEnvironment

Undoes any accumulated rotations, but preserves translates and zooms.

resetUniverse() - Method in class edu.washington.NVisF.viewer.PlotEnvironment

Undoes all rotations, translates, and zooms, returning the view to its initial state.

rotAngle - Static variable in class edu.washington.NVisF.viewer.RotationControlPanel

The amount of rotation per button click, currently 22.5".

RotationControlPanel - class edu.washington.NVisF.viewer.RotationControlPanel.

The RotationControlPanel produces a small panel with buttons that perform rotations (or undo them) of the 3D universe.

RotationControlPanel(PlotEnvironment) - Constructor for class edu.washington.NVisF.viewer.RotationControlPanel

Creates a new RotationControlPanel attached to the given PlotEnvironment.

rotX(double) - Method in class edu.washington.NVisF.viewer.PlotEnvironment

Rotates the universe by the given angle about the X axis (that is, rotate down).

rotY(double) - Method in class edu.washington.NVisF.viewer.PlotEnvironment

Rotates the universe by the given angle about the Y axis (that is, rotate right).

rotZ(double) - Method in class edu.washington.NVisF.viewer.PlotEnvironment

Rotates the universe by the given angle about the Z axis (that is, rotate counter-clockwise).

S

SandColoringStrategy - class edu.washington.NVisF.plotter.SandColoringStrategy.

This class implements a coloring strategy for sandpiles with a bimodal size distribution.

SandColoringStrategy() - Constructor for class edu.washington.NVisF.plotter.SandColoringStrategy

SandPileReader - class edu.washington.NVisF.dataIO.SandPileReader.

The SandPileReader class provides access to binary files in the SS (solar system) format, without any scale factor applied to the data.

SandPileReader() - Constructor for class edu.washington.NVisF.dataIO.SandPileReader

SandPileReader(String) - Constructor for class edu.washington.NVisF.dataIO.SandPileReader

SCALAR_FIELD_ELEMENT - Static variable in class edu.washington.NVisF.dataIO.DataField

identifies scalar data fields.

scalarFieldMap - Variable in class edu.washington.NVisF.dataIO.tfr.TipsyParticles

setAlphaColoringStrategy(AlphaColoringStrategy) - Method in class edu.washington.NVisF.plotter.LineCloudStrategy

setss the AlphaColoringStrategy that provides alpha values for this PlotStrategy.

setAlphaColoringStrategy(AlphaColoringStrategy) - Method in class edu.washington.NVisF.plotter.PointCloudStrategy

setss the AlphaColoringStrategy that provides alpha values for this PlotStrategy.

setAppearanceStrategy(AppearanceStrategy) - Method in class edu.washington.NVisF.plotter.LineCloudStrategy

sets the AppearanceStrategy that provides Appearance objects for this PlotStrategy.

setAppearanceStrategy(AppearanceStrategy) - Method in class edu.washington.NVisF.plotter.PointCloudStrategy

sets the AppearanceStrategy that provides Appearance objects for this PlotStrategy.

setColor(Color3f) - Method in class edu.washington.NVisF.plotter.ColoringStrategy

sets the color used by this ColoringStrategy.

setColoringStrategy(ColoringStrategy) - Method in class edu.washington.NVisF.plotter.LineCloudStrategy

sets the ColoringStrategy that provides colors for this PlotStrategy.

setColoringStrategy(ColoringStrategy) - Method in class edu.washington.NVisF.plotter.PointCloudStrategy

sets the ColoringStrategy that provides colors for this PlotStrategy.

setDataReader(DataReader) - Method in class edu.washington.NVisF.plotter.PlotCommand

sets this PlotCommand's DataReader.

setFieldName(String) - Method in class edu.washington.NVisF.plotter.PositionStrategy

Sets the new name of the data field to use for positions.

setObjectGroupVisible(int, boolean) - Method in class edu.washington.NVisF.viewer.PlotEnvironment

sets the visibility of the ObjectGroup specified by index according to the visible flag.

setPlotStrategy(PlotManager) - Method in class edu.washington.NVisF.plotter.PlotCommand

sets this PlotCommand's PlotStrategy by extracting the object name from the predicate and using the name to retrieve a PlotStrategy from the supplied PlotManager.

setPlotStrategy(PlotStrategy) - Method in class edu.washington.NVisF.plotter.PlotCommand

sets this PlotCommand's PlotStrategy.

setPointAttributes(float, boolean) - Method in class edu.washington.NVisF.plotter.PointCloudAppearanceStrategy

Sets the pixel size and antialiasing to use when constructing Appearance objects.

setPointAttributes(PointAttributes) - Method in class edu.washington.NVisF.plotter.PointCloudAppearanceStrategy

Sets the PointAttributes object to reference when constructing Appearance objects.

setPositionStrategy(PositionStrategy) - Method in class edu.washington.NVisF.plotter.LineCloudStrategy

sets the PositionStrategy that provides coordinates for this PlotStrategy.

setPositionStrategy(PositionStrategy) - Method in class edu.washington.NVisF.plotter.PointCloudStrategy

sets the PositionStrategy that provides coordinates for this PlotStrategy.

setPredicate(String) - Method in class edu.washington.NVisF.plotter.PlotCommand

sets this PlotCommand's predicate.

setPrintStackTrace(boolean) - Static method in class edu.washington.NVisF.plotter.PlotterMessageHandler

if flag is true, the stack trace for exceptions will be printed.

setScaleFactor(double) - Method in class edu.washington.NVisF.viewer.PlotEnvironment

Seta a scale factor for the universe.

setVectorStrategy(VectorStrategy) - Method in class edu.washington.NVisF.plotter.LineCloudStrategy

sets the VectorStrategy that provides vector endpoints for this PlotStrategy.

setVertexFormat(int) - Method in class edu.washington.NVisF.plotter.LineCloudStrategy

sets the vertexFormat used to construct the GeometryArray.

setVertexFormat(int) - Method in class edu.washington.NVisF.plotter.PointCloudStrategy

sets the vertexFormat used to construct the GeometryArray.

setViewParams(float, float, float, float, float) - Method in class edu.washington.NVisF.viewer.PlotEnvironment

Sets various viewing parameters.

showObjectGroup(int) - Method in class edu.washington.NVisF.viewer.PlotEnvironment

sets the specified group to be visible.

SimpleMovieIO - class edu.washington.NVisF.animator.SimpleMovieIO.

This class provides a very simple file format for NVisF movies in which each ObjectGroup wraps a PointArray.

SimpleMovieIO() - Constructor for class edu.washington.NVisF.animator.SimpleMovieIO

SourceNotFoundException - exception edu.washington.NVisF.dataIO.SourceNotFoundException.

A SourceNotFoundException is thrown when the data source identified in an initConnection() request could not be found.

SourceNotFoundException() - Constructor for class edu.washington.NVisF.dataIO.SourceNotFoundException

SourceNotFoundException(String) - Constructor for class edu.washington.NVisF.dataIO.SourceNotFoundException

Initializes a new SourceNotFoundException with the given message.

SplitPointCloudStrategy - class edu.washington.NVisF.plotter.SplitPointCloudStrategy.

A SplitPointCloudStrategy is exactly like a PointCloudStrategy except that the points are split into a set of GeometryArrays so that no more than a fixed number of vertices are in each GeometryArray.

SplitPointCloudStrategy() - Constructor for class edu.washington.NVisF.plotter.SplitPointCloudStrategy

SplitPointCloudStrategy(PositionStrategy, ColoringStrategy, AlphaColoringStrategy, AppearanceStrategy) - Constructor for class edu.washington.NVisF.plotter.SplitPointCloudStrategy

SplitPointCloudStrategy(PositionStrategy, ColoringStrategy, AppearanceStrategy) - Constructor for class edu.washington.NVisF.plotter.SplitPointCloudStrategy

SSColoringStrategy - class edu.washington.NVisF.plotter.SSColoringStrategy.

This class implements a particular coloring strategy used by the SS (solar system) analysis routines, in which the data contain an integer field called "color" that is mapped to a set of colors: 0 = black, 1 = white, 2 = red, 3 = green, 4 = blue, 5 = yellow, 6 = magenta, 7 = cyan, 8 = gold, 9 = pink, 10 = orange, 11 = khaki, 12 = violet, 13 = maroon, 14 = aqua, 15 = navy, 16-255 = increasing grays from black to white (16 = black, 255 = white) this class maps integers outside the range [0-255] to white.

SSColoringStrategy() - Constructor for class edu.washington.NVisF.plotter.SSColoringStrategy

SSFileReader - class edu.washington.NVisF.dataIO.SSFileReader.

The SSFileReader class provides access to binary files in the SS (solar system) format.

SSFileReader() - Constructor for class edu.washington.NVisF.dataIO.SSFileReader

SSFileReader(String) - Constructor for class edu.washington.NVisF.dataIO.SSFileReader

StarParticles - class edu.washington.NVisF.dataIO.tfr.StarParticles.

This class reads the star particle data from a Tipsy binary file.

StarParticles(DataInputStream, int, int) - Constructor for class edu.washington.NVisF.dataIO.tfr.StarParticles

start() - Method in class edu.washington.NVisF.animator.SwitchMovie

start showing the movie.

SwitchMovie - class edu.washington.NVisF.animator.SwitchMovie.

Constructs a movie from a set of frames (that is, ObjectGroups and a supplied Alpha object.

SwitchMovie() - Constructor for class edu.washington.NVisF.animator.SwitchMovie

SwitchMovieBehavior - class edu.washington.NVisF.animator.SwitchMovieBehavior.

A SwitchMovieBehavior object performs the animation of a movie contructed by SwitchMovie by changing the scene to view according to the value of the supplied Alpha object.

T

temperature - Variable in class edu.washington.NVisF.dataIO.tfr.GasParticles

tform - Variable in class edu.washington.NVisF.dataIO.tfr.StarParticles

time - Variable in class edu.washington.NVisF.dataIO.tfr.TipsyHeader

TipsyFileReader - class edu.washington.NVisF.dataIO.TipsyFileReader.

TipsyFileReader provides access to Tipsy binary files.

TipsyFileReader() - Constructor for class edu.washington.NVisF.dataIO.TipsyFileReader

TipsyFileReader(String) - Constructor for class edu.washington.NVisF.dataIO.TipsyFileReader

TipsyHeader - class edu.washington.NVisF.dataIO.tfr.TipsyHeader.

This class reads the header from a Tipsy binary file.

TipsyHeader(DataInputStream) - Constructor for class edu.washington.NVisF.dataIO.tfr.TipsyHeader

TipsyParticles - class edu.washington.NVisF.dataIO.tfr.TipsyParticles.

This is the abstract base class for classes that read data for one particle type from a Tipsy binary file.

TipsyParticles() - Constructor for class edu.washington.NVisF.dataIO.tfr.TipsyParticles

turnOffObjectGroup(int) - Method in class edu.washington.NVisF.viewer.PlotEnvironment

sets the specified group to be not visible.

TypeInfo - class edu.washington.NVisF.dataIO.TypeInfo.

The TypeInfo class provides meta-info regarding the data available from a given source.

TypeInfo() - Constructor for class edu.washington.NVisF.dataIO.TypeInfo

Constructs an empty TypeInfo object.

typeName - Variable in class edu.washington.NVisF.dataIO.tfr.TipsyParticles

V

VECTOR_FIELD_ELEMENT - Static variable in class edu.washington.NVisF.dataIO.DataField

identifies vector data fields.

vectorFieldMap - Variable in class edu.washington.NVisF.dataIO.tfr.TipsyParticles

VectorStrategy - class edu.washington.NVisF.plotter.VectorStrategy.

A VectorStrategy returns a vector for each data object available from a specified PlotCommand.

VectorStrategy() - Constructor for class edu.washington.NVisF.plotter.VectorStrategy

vectorSum(float[], float[]) - Static method in class edu.washington.NVisF.plotter.LineCloudStrategy

Utility method for adding two floating point arrays.

velocity - Variable in class edu.washington.NVisF.dataIO.tfr.StarParticles

velocity - Variable in class edu.washington.NVisF.dataIO.tfr.GasParticles

velocity - Variable in class edu.washington.NVisF.dataIO.tfr.DarkParticles

viewerSize - Variable in class edu.washington.NVisF.viewer.PlotEnvironment

W

white - Static variable in class edu.washington.NVisF.plotter.ColoringStrategy

writeAppearance(Appearance, ObjectOutputStream) - Static method in class edu.washington.NVisF.animator.AppearanceSerializer

Writes the provided Appearance object to the given ObjectOutputStream.

writeAppearance(Appearance, String) - Static method in class edu.washington.NVisF.animator.AppearanceSerializer

Writes the provided Appearance object to a file with the given name, with a ".apr" extension added if not already present.

writeMovie(ObjectGroup[], String) - Method in class edu.washington.NVisF.animator.MovieIO

Writes the supplied ObjectGroups to file.

writeMovie(ObjectGroup[], String) - Method in class edu.washington.NVisF.animator.CompressedMovieIO

Writes the input ObjectGroups using outputFileName as a filename pattern.

writeMovie(ObjectGroup[], String) - Method in class edu.washington.NVisF.animator.SimpleMovieIO

Writes the Geometry component of the movie onto a file called 'outputFileName.smv', and the Appearance to a file called 'outputFIleName.apr'.

writeMovieFrames(PlotCommand, String[], String) - Static method in class edu.washington.NVisF.animator.MovieMaker

Constructs a set of movie frames from the supplied PlotCommand and the String array, dataSources, containing the names of data sources as appropriate arguments to the DataReader.initConnection(String) method, and writes them to file using a compressed file format.

writeMovieFrames(PlotCommand, String, String) - Static method in class edu.washington.NVisF.animator.MovieMaker

Constructs a set of movie frames from the supplied PlotCommand and a file which contains the names of the data sources, and writes them to file using a compressed file format.

Y

yellow - Static variable in class edu.washington.NVisF.plotter.ColoringStrategy

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