Virtual Cell Virtual Cell Website School of Health Sciences Website Purdue University Website
About the Virtual Cell Download VC Examples Theory User Manual Help Archive of Biological Datasets
RMR input file used to generate fit
Human Bladder Carcinoma Cells

MODEL: DRM=RMR CKM=QECK !Model Specification
CELL: DNA=5.667D+09 NC=46
IRAD: CL=25 !Radiation damage to DNA
CLRP: RHT=2.2091982E-01 BMR=1.1448708E-03 PHI= 6.3836614E-03 A0=0.00
CCKM: TCC=10 TPOT=20 GF=0.0 N0=1 KAP=1.0D+38 VOL=1
RBM: KX=6.0E+06 FMAX=1 !Analysis of PFGE data

! Parameters that impact on solution accuracy
SOLVER: DBLV=0 ETOL=1.0E-09 MXSS=999999 HMAX=10

! Parameters that control the time steps and stopping criteria
SIMCON: FSDX=1 TSAX=12 TCUT=96 FRDL=1.0E+00 RCUT=1.0D-09

BCONF: MITR=10000 MXFN=100000 SGT=1.0D-04 SST=1.0D-09 FCT=1.0D-09
MCAT: NPAR=3
AMP1: CID=CLRP PNAM=BMR PLB=0 PUB=1.0E-02 PIG=1.0E-04
AMP2: CID=CLRP PNAM=PHI PLB=0 PUB=1.0 PIG=0.01
AMP3: CID=CLRP PNAM=RHT PLB=0.01 PUB=12.0 PIG=2

/*
Figure of Merit (FOM) Weight
1: cell survival data
2: DSB rejoining data (FAR)
3: DSB rejoining data (Avg. DSB/cell)
4: Transformed cells per survivor
5: Transformed cells per irradiated cell
*/
FOM: UW=LFWT
LFWT = 1 0 0 0 0 /

School of Health Sciences
Purdue University
Disclaimer

Last updated: 10 June, 2011
Webmaster