Just before Christmas we released two preprints with accompanying GitHub repositories. While both are on on oysters, they are different in several ways. Different species, different servers, and different software approaches (R vs IPython). If you need some light reading over this Holiday Season be sure to have a gander at these products. We would love it if you could give us the gift of your comments on anything on the respective hosting sites.
1) Heare JE, Blake B, Davis JP, Vadopalas B, Roberts SB. (2014) Evidence of Ostrea lurida (Carpenter 1894) population structure in Puget Sound, WA. PeerJ PrePrints 2:e704v1 http://dx.doi.org/10.7287/peerj.preprints.704v1
GitHub Repo (Data and R scripts): https://github.com/jheare/OluridaSurvey2014
2) Indication of family-specific DNA methylation patterns in developing oysters
Claire E. Olson, Steven B. Roberts
GitHub Repo (IPython notebook): https://github.com/che625/olson-ms-nb