Class List

Here are the classes, structs, unions and interfaces with brief descriptions:

[detail level 1234567]

►Nexamples
►Ndg
►Nplasma
►Nlangmuir
►Nlangmuir_postproc
Cfreq_analysis
►Ngeometry
►Nphase_space
CPhaseSpaceDGGeometry	Defines the global nodal DG phase space geometry at the patch level, given a WmUDGGeometry object that describes the patch level physical space nodal DG geometry and structured velocity space information
►Nphase_space_element
CPhaseSpace34Duoprism	Child PhaseSpaceElement class for 2D2V PhaseSpace34Duoprism
CPhaseSpaceCube	Child PhaseSpaceElement class for 1D2V PhaseSpaceCube
CPhaseSpaceElement	Base class used for generating phase space element information for kinetic phase space calculations
CPhaseSpaceFace	PhaseSpaceFace Class used by PhaseSpaceElements
CPhaseSpaceSquare	Child PhaseSpaceElement class for 1D1V PhaseSpaceSquare
►Nkhi_casedata
CCase
CPositionSpace
CVelocitySpace
►Nkinetic_equilibrium
CKineticEquilibrium
►Nline_basis
CLineBasis
►Nsimplex_basis
CBasis
CLineBasisTest
CQuadratureRule
►Ntf_equilibrium
CTwoFluidEquilibrium
►Ntriangle_basis
CTriangleBasis
CTrianglePPQuadratureTest
►Nwarpy
►Napps
►Napplication
Capplication
Capplications_container	Applications_container is used as a storage mechanism for applications
►Ncoupled_diffusion
Ccoupled_diffusion	Coupled diffusion
►Nfive_moment
►Nfive_moment
Cartificial_dissipation	Artificial dissipation, including density, momentum, and energy diffusion
Cartificial_dissipation_cyl_source	Cylindrical source terms for artificial dissipation, including density, momentum, and energy diffusion
Cartificial_viscosity_limiter	Artificial Viscosity Limiter
Cartificial_viscosity_limiter_historical	Artificial Viscosity Limiter Historical
Cartificial_viscosity_limiter_meier	Artificial Viscosity Limiter using formulation by Eric Meier (Phd Thesis, 2011, Univ
Caxis_5moment	Axis boundary condition
Caxis_5moment_gradients
Caxisymmetric_field_source_1D	Lorentz force operator for 5-moment model with geometric source terms (axisymmetric assumptions) in 1D
Caxisymmetric_field_source_2D	Lorentz force operator for 5-moment model with geometric source terms (axisymmetric assumptions) in 2D
Caxisymmetric_phfield_source_1D	Lorentz force operator for 5-moment model with geometric source terms (axisymmetric assumptions) in 1D
Ccopyout_5moment
Cdensity_diffusion_cyl_source	Density diffusion cylindrical source
Cdensity_diffusion_flux	Density diffusion flux
Cein_bc	General electron-ion-neutral boundary conditions
Ceuler	Euler fluid flux
Ceuler1d_riemann_problem_analytic_solution	Exact Riemann solution for a 1D Euler
Ceuler_cyl_source	Source terms required for modeling in a cylindrical coordinate system
Ceuler_freeslip_wall_bc_flux	Euler fluid flux
Cfield_source	Lorentz force operator for 5-moment model
Cfive_moment_conserved_primitive_conversion	5 Moment Conserved Primitive Variable conversion
Cfreeslip_wall	Freeslip wall boundary condition
Cfreeslip_wall_gradients
Cfreeslip_wall_gradients_yu
Cfreeslip_wall_yu	Freeslip wall boundary condition
Cgeneral_source	Source terms associated with electron-ion-neutral model
Cgeometric_source_1D	Lorentz force operator for 5-moment model with geometric source terms (axisymmetric assumptions) in 1D
Cinterspecies_collisions	Basic resistive operator between 5-moment fluids
Cintraspecies_collisions	Navier-Stokes style collisions
Cintraspecies_cyl	Cylindrical source terms for Navier-Stokes style collisions
Ckinetic_to_5moment	Kinetic to 5-moment
Ckinetic_to_five_moment_flux_bc	Kinetic to Five Moment Flux boundary Condition
Cnavier_stokes	Navier-Stokes solver (euler + intraspecies collisions)
Cnoslip_wall	Noslip wall boundary condition
Cnoslip_wall_gradients
Cq_h_artificial_dissipation	Artificial Viscosity and Heat Flux
Creaction_source	Source terms associated with atomic neutral fluid model
Creaction_source_mol	Source terms associated with molecular fluid model
Creflecting_wall	Reflecting wall boundary condition (may only be good for 2 dimension)
Csheath_bc	Sheath BC for electron-ion-neutral model
►Nfunctions
►Narbitrary
Cbandpass	Sets a non-axis aligned cuboid region to inside_value and everywhere else to outside_value
Cbump	Multi-dimensional isotropic bump function of the form exp{-1/(1-x^2)} with given min/max values
Ccopy_vals	Calls function_evaluator to copy values
Cfourier	Fourier series
Cgaussian	Multi-dimensional isotropic normal distribution function with capped min/max values
Cget_source	Writes output of source sub app to speceified output variable
Cheaviside	Heaviside step function
Clinear_interpolation_1d	Calculates f(t) using linear interpolation using arrays for t and f
Cmultiplier	Function which multiplies the field by a given multiplier
Cpolynomial	C_i ((x - center)/norm)**i
Cset_to	Function which sets field to a given uniform value
Csine2d	2D sine function
Cstationary_cylindrical_hyperdiffusion_bump
CTE_TM_mode	Bessel functions
Ctrapezoid	Initializes a trapezoid shaped object
►Nfive_moment
Cconstant_ic5
Ccouette_flow_5moment	Initializes a 5 momment
Ccylindrical_couette_flow_5moment	Initializes a 5 momment
Cein_ic_5moment	Function which sets IC for 5-moment electron-ion-neutral problem
Ceuler1d_arbitrary_shocktube_5moment	Function which sets 5-moment fluid to shock tube conditions arbitrary riemann problem
Ceuler1d_double_rarefaction_5moment	Function which sets 5-moment fluid to shock tube conditions double rarefaction problem
Ceuler1d_shock_entropy_problem_5moment	Function which sets 5-moment fluid to shock tube conditions for shock entropy problem as described by Moe and Rossmanith (A simple and effective high-order shock-captutring limiter for discontinuous galerkin methods: http://arxiv.org/abs/1507.03024 )
Ceuler2d_forward_facing_step_5moment	Function which sets 5-moment fluid forward facing step problem as defined in: "Hesthaven pg 233
Ceuler2d_rp1_5moment	Function which sets 5-moment fluid RP1 problem as defined in: "A Simple and Effictive High-Order Shock-Capturing Limiter for Discontinuous Galerkin Methods" by Scott Moe, James Rossmanith, and David Seal, arXiv 1507.03024v1, 2015
Cflow_init2_5moment	Function which sets IC for simple 5-moment fluid flow problem
Cflow_init_5moment	Function which sets IC for simple 5-moment fluid flow problem
Cgem_5moment	Function which sets field to a given uniform value
Cgem_5moment_1D	Function which sets field to a given uniform value
Cgem_5moment_new	Function which sets field to a given uniform value
Charris_current_sheet_5moment	Function which sets field to a given uniform value
Ckhi_5moment	Function which sets fields for the generic KHI problem
Ckhi_5moment_analytic	Function which sets fields for the analytic KHI problem
Ckhi_5moment_kinetic_fluid_vars	Function which sets fields for the KHI problem, grabbing the fluid vars from the kinetic equibrium
Clangmuir_dispersion_5moment
Cmanual_density_and_pressure_5moment	Function which sets 5-moment fluid variables with density and pressure set by subapplications, velocities set to 0
Cplasma_switch_5moment	Initializes a 2D plama switch pillar
Cpulse_fluid5
Cpulses_fluid5	Function which creates gaussian, polynomial, or uniform columns in a fluid
Cradial_slab
Cramp	Defines a linear ramp along a given direction
Crti_5moment	Function which sets field to a given uniform value
Cset_density_and_pressure_floors_ions_electrons_5moment	Function which sets 5-moment ion and electron density and pressure floors
Cset_density_and_pressure_floors_single_species_5moment	Function which sets 5-moment single species density and pressure floors
Cshock_tube_5moment	Function which sets 5-moment fluid to shock tube conditions
Cslab_fluid5
Ctwo_stream
Czpinch_5moment_electron_1D
Czpinch_5moment_electron_1D_Car
Czpinch_5moment_electron_2D
Czpinch_5moment_ion_1D
Czpinch_5moment_ion_1D_Car
Czpinch_5moment_ion_2D
►Nkinetics
Ccounter_streaming_beams_2d2v	Function which sets two maxwellian streams
Ccustom_vlasov	Velocity distribution initialization routine
Cdrifting_maxwellian	Function for a general drifting maxwellian with perturbation
Cfive_moment_to_kinetic	5-moment to Kinetic
Cgeneral_maxwellian_two_stream	Function which sets two maxwellian streams
Cinitial_constant	Function that sets a constant distribution in phase space
Ckinetics1d1v_arbitrary_shocktube	Function which sets 1d1v kinetics fluid to shock tube conditions arbitrary riemann problem
Ckinetics1d1v_double_rarefaction	Function which sets kinetic shock tube conditions double rarefaction problem
Ckinetics1d2v_dory_guest_harris	Function which sets a Dory-Guest-Harris Initial Condition See Genia Vogman Dissertation equation 5.28 / JCP 2014 equation 29
Ckinetics2d2v_dory_guest_harris	Function which sets a Dory-Guest-Harris Initial Condition for 2D2V See Genia Vogman Dissertation equation 5.28 / JCP 2014 equation 29
Ckinetics2d2v_kelvin_helmholtz_instability	Function which sets a Kelvin Helmholtz Instability Initial Condition See Vogman PoP 2020 and PoP 2019
Ckinetics2d2v_kelvin_helmholtz_instability_fluid_maxwellian	Function which sets a Kelvin Helmholtz Instability Initial Condition See Vogman PoP 2020 and PoP 2019 This actually takes the fluid initial condition and converts that to Maxwellians instead of using the Poission-solved non-maxwellian initial condition
Cmaxwellian	Function which sets a maxwellian distribution
Cpressure_equilibrium	Function for a drifting maxwellian in pressure equilbrium with a density gradient
Cvlasov_1d1v_landau_damping	Velocity distribution initialization routine for the 1d1v Landau Damping
Cvlasov_1d1v_two_stream	Velocity distribution initialization routine for the 1d1v Two stream Instability
Cvlasov_2d2v_landau_damping	Velocity distribution initialization routine for the 2d2v Landau Damping
Cweibel_custom	Calculates the difference between a fed-in IC and a General Maxwellian Two-Stream conditions, weights this difference, and adds it back
►Nmaxwell
Ccustom_maxwell	Velocity distribution initialization routine
Cein_ic_EM_5moment	Function which sets IC for EM fields in 5-moment electron-ion-neutral problem
Cfield_1d1v_landau_damping	Velocity distribution initialization routine
Cfield_2d2v_landau_damping	Velocity distribution initialization routine
Cflow_init_EM_5moment	Sets IC for EM fields in a simple 5-moment fluid flow problem
Cgem_field	Function which sets field to a given uniform value
Cgem_field_1D	Function which sets field to a given uniform value
Charris_current_sheet_field	Function which sets field to a given uniform value
Chartmann_field
Ckhi_maxwell	Function which sets fields for the generic KHI problem
Ckhi_maxwell_2d2v_kinetic_setup	Function which sets fields for the analytic KHI problem for the 2d2v kinetic setup
Ckhi_maxwell_analytic	Function which sets fields for the analytic KHI problem
Clangmuir_dispersion_field
Cplasma_switch_fields	Initializes a 2D plama switch pillar
Crti_field	Function which sets field to a given uniform value
Csinc_field	Function which creates sinc function in EM field
Csinc_field_2d	Function which creates sinc function in EM field
Csine_field	Function which creates sine function in EM field
Cuniform_maxwell	Maxwell field initialization routine
Czpinch_field_1D
Czpinch_field_1D_Car
Czpinch_field_2D
Czpinch_field_test_1D
►Nmhd
Caccel1d_mhd	Function which sets IC for MHD 1d acceleration problem
Cbennett_equilibrium	Function which sets IC for MHD Bennett Equilibrium in Cylindrical and Cartesian Coordinates
Cbriowu_mhd
Ccopy_pressure	Calls function_evaluator to copy mhd pressure
Ccustom_mhd
Cdaiwoodward_mhd
Cgem_mhd	Function which sets field to a given uniform value
Cgem_mhd_1D	Function which sets field to a given uniform value
Chartmann_flow_mhd	Initializes a MHD hartmann flow
Corszagtang_mhd
Cpulse_mhd
Cset_density_and_pressure_floors_mhd	Function which sets mhd density and pressure floors
Czpinch_imhd_1D
Czpinch_imhd_2D
►Nphmaxwell
Cein_ic_phEM_5moment	Function which sets IC for EM fields in 5-moment electron-ion-neutral problem
Czpinch_phfield_1D
►Nthirteen_moment
Ccouette_flow_13moment	Initializes 13 momment
Ccustom_13moment
Celectromagnetic_shock_tube_13moment	Function which sets 13-moment fluid to brio wu shock tube conditions
Cgem_13moment	Function which sets field to a given uniform value
Charris_current_sheet_13moment	Function which sets field to a given uniform value
Chartmann_flow_13moment
Cplasma_switch_13moment	Initializes a 2D plama switch pillar
Cpulse_fluid13
Cpulses_fluid13
Crandom_velocity_fluid13
Cshock_tube_13moment	Function which sets 13-moment fluid to shock tube conditions
Csinc_13moment	Function which sets 13-moment fluid to shock tube conditions
►Nunique_variable
Cadder	Function which adds unique variables
Ccircuit_ic	Function which sets IC circuit
Cdouble_module_rlc_with_load_rhs	Function which calculates rhs for a double module rlc circuit with voltage load
Ciload	Function which sets Iload in circuit
Cseries_rlc_with_load_rhs	Function which calculates rhs for a series rlc circuit with voltage load
Csubmodule_rlc_with_load_rhs	Function which calculates rhs for a double module rlc circuit with voltage load
►Ngeneral_apps
►Ngeneral_apps
Cbloch_periodic_bc	Virtual boundary condition for Bloch periodic boundary conditions
Clobc_source	Lacuna-based open boundary condition source term for exterior variables in the transition region
►Nintegrate
►Nintegrate
Cint_DDn_dv_cylindrical_mhd	Integrate the DDn reactivity over domain volume, given MHD variables
Cint_Ex2_dv	Integrate the field energy of component x over the domain volume
Cint_ke_comp_dv	Integrate a kinetic energy component over the domain volume
Cint_KEx_dv	Integrate the kinetic energy of component x over the domain volume
Cint_q2_dv	Integrate the variable q^2 over the domain volume
Cint_q_dv	Integrate the variable q over the domain volume
Cint_q_dv_cylindrical	Integrate the variable q over the domain volume
Cmax_diff	Computes the max value
Cp_norm_diff	Integrate the p_norm
Cp_norm_diff_analytic	Integrate the p_norm vs against analytic solution
Cvolume_integrator	Integrate the volume
►Nmaxwell
►Nmaxwell
Cantenna_single_freq_bc	Single frequency antenna boundary condition
Caxis_maxwell	Axis boundary condition
Caxis_maxwell_gradient	Axis boundary condition for gradients
Caxisymmetric_fluid_source_1D	Fluid source for Maxwell's equations with geometric source terms (axisymmetric assumptions) in 1D
Caxisymmetric_fluid_source_2D	Fluid source for Maxwell's equations with geometric source terms (axisymmetric assumptions) in 2D
Cconducting_wall	Conducting wall boundary condition
Cconducting_wall_gradient	Conducting wall boundary condition for gradients
Cconducting_wall_gradient_yu	Conducting wall boundary condition for gradients
Cconducting_wall_yu	Conducting wall boundary condition
Ccopyout_maxwell
Ccyl_source	Source terms required for modeling in a cylindrical coordinate system
Cdivergence_error	Calculation of divergence error
Cfluid_source	Fluid source for Maxwell's equations
Cflux	Maxwell flux
Cgeometric_source_1D	Fluid source for Maxwell's equations with geometric source terms (axisymmetric assumptions) in 1D
Cimhd_to_maxwell	Virtual boundary condition for converting ideal MHD variables to Maxwell variables
Cmaxwell_to_maxwell	Virtual boundary condition for passing field values across subdomain boundaries
Coscillating_wall	Oscillating wall boundary condition (based on set of sine waves)
Csinc_absorbing_wall	Sinc wall (with zero dirchlet) boundary condition
Csinc_wall	Sinc wall (also conducting wall) boundary condition
Czpinch_1D_field_analytic_solution	Exact EM field solution for a 1D Zpinch
►Nmhd
►Nboundary_conditions
►Nboundary_conditions
Caxis_bc	Axis boundary conditions at r=0 for axisymmetric cylindrical geometry
Caxis_bc_gradients	Axis boundary conditions for gradients at r=0 for axisymmetric cylindrical geometry
Cminus_electric_field_dot_tangent	Calculates E dot t, used for calculating potential, phi = -\int_a^b(E dot t)dl for a unique variable
►Ndivergence_cleaning
►Ndivergence_cleaning
Cmixed_glm	Mixed GLM divergence cleaning for MHD as formulated by Dedner
Cparabolic	Parabolic Diverence Cleaing
►Nhallmhd
►Nhallmhd
Cconducting_wall_freeslip_gradients	Boundary Condition on gradients for conducting walls for Hall MHD
Ccyl_source	Source terms required for modeling in a cylindrical coordinate system
Challmhd	Hall MHD
►Nhyperresistivity
►Nhyperresistivity
Celectric_field_effect	Applies hyperresistive electric field term (for hyperresisitivity) to mhd equations (goes into energy and induction)
Celectric_field_effect_cyl_source	Applies hyperresistive electric field cylindrical source term (for hyperresisitivity) to mhd equations (goes into energy and induction)
Cohms_law	Defines Hyperresistivity term of Ohms Law used for Hall MHD stabilization (eta * H == eta * grad J)
Cohms_law_cyl_source	Defines source term for Hyperresistivity term of Ohms Law used for Hall MHD stabilization (eta * H == eta * grad J)
►Nimhd
►Nimhd
Cartificial_dissipation	Artificial dissipation, including density, momentum, and energy diffusion
Cartificial_dissipation_cyl_source	Artificial dissipation, including density, momentum, and energy diffusion
Cartificial_viscosity_limiter	Artificial Viscosity Limiter
Cartificial_viscosity_limiter_meier	Artificial Viscosity Limiter using formulation by Eric Meier (Phd Thesis, 2011, Univ
Caxisymmetric_imhd_1D	Ideal MHD in cylindrical coordinates with axisymmetric assumptions
Caxisymmetric_imhd_2D	Ideal MHD in cylindrical coordinates with axisymmetric assumptions
Ccyl_source	Source terms required for modeling in a cylindrical coordinate system
Cimhd	Ideal MHD
Cimhd_arbitrary_source	Ideal MHD arbitrary Source
Cimhd_conserved_primitive_conversion	Ideal MHD Conserved Primitive Variable conversion
Cimhd_powell_source	Ideal MHD Powell Source
Cinjection_source	Injection source for a 2d z-r cynlindrical simulation at (z,r)
Creaction_source	Plasma source terms associated with atomic neutral fluid model
Ctimed_source
Ctwofluid_to_imhd	Two fluid to IMHD
Ctwofluid_to_imhd_consistent_assumption	Two fluid to IMHD
►Nimhd_conducting_wall
Cimhd_conducting_wall_freeslip
Cimhd_conducting_wall_freeslip_gradients
Cimhd_conducting_wall_freeslip_with_subapp
Cimhd_conducting_wall_freeslip_yu
Cimhd_conducting_wall_noslip
Cimhd_conducting_wall_noslip_gradients
Cimhd_conducting_wall_noslip_yu
►Nimhd_copyout
Cimhd_copyout
Cimhd_copyout_gradients
►Nimhd_freeslip_wall
Cimhd_freeslip_wall
►Nimhd_pulse_inlet
Cpulse_inlet
►Nimhd_pulse_outlet
Cpulse_outlet
►Nradiation
►Nradiation
Cblackbody	Blackbody radiation model
Cbremsstrahlung	Bremsstrahlung radiation model
Cimpurity_line	Impurity line radiation model
Cvacuum	Vacuum radiation model
►Nrmhd
►Nrmhd
Ccurrent_density	Calculates Current Density
Ccyl_source	Source terms required for modeling in a cylindrical coordinate system
Cdensity_diffusion_cyl_source_mhd	Density diffusion cylindrical source
Cdensity_diffusion_flux_mhd	Density diffusion flux
Celectric_field	Calculates = E = -u x B + (dp/L) * (nupt) * J
Cinsulator_inlet_2d_cyl_bc	Sets inlet insulator BC in 2D z-r axisymmetric zpinch
Cinsulator_inlet_2d_cyl_bc_gradients	Sets gradients for inlet insulator BC in 2D z-r axisymmetric zpinch
Cohmic_source_mhd	Source associated with reduced Ohmic heating
Cpn_bc	General plasma-neutral boundary conditions
Cpn_bc_gradients	General plasma-neutral gradient boundary conditions
Cporous_insulator_inlet_2d_cyl_bc	General plasma-neutral boundary conditions
Cporous_insulator_inlet_2d_cyl_bc_gradients	General plasma-neutral gradient boundary conditions
Cresistive_diffusion	Resistive Diffusion Terms for MHD Only
►Nrmhd_conducting_wall
Cflowthrough_wall
Cflowthrough_wall_gradients
Crmhd_conducting_wall_freeslip_gradients
►Nrmhd_noslip_wall
Crmhd_noslip_wall
►Nviscousmhd
►Nviscousmhd
Cintraspecies_collisions_mhd	Intraspecies collision terms for MHD Only
Cintraspecies_cyl_source	Source terms required for modeling in a cylindrical coordinate system
►Nmhd_analytic
Chartmann_problem_analytic_solution	Hartman problem analytic solution for MHD
►Npcmaxwell
►Npcmaxwell
Cconducting_wall	Conducting wall boundary condition
Cconducting_wall_neumann	Conducting wall boundary condition
Cfluid_source	Fluid source from density gradient for PCMaxwell's equations
Cflux	PCMaxwell flux
►Nphmaxwell
►Nphmaxwell
Caxisymmetric_fluid_source_1D	Fluid source for PHMaxwell's equations
Cconducting_wall	Conducting wall boundary condition
Cconducting_wall_gradient	Conducting wall boundary condition for gradients
Cconducting_wall_yu	Conducting wall boundary condition
Ccopyout_phmaxwell
Ccyl_source	Source terms required for modeling in a cylindrical coordinate system
Cfluid_source	Fluid source for PHMaxwell's equations
Cflux	PHMaxwell flux
Coscillating_wall	Oscillating wall boundary condition (based on set of sine waves)
Csinc_wall	Sinc wall (also conducting wall) boundary condition
►Nplasma
►Nplasma
Cfrequency_check_13moment	Module that checks plasma frequency, cyclotron frequency, and collision frequency
Cfrequency_check_5moment	Module that checks plasma frequency, cyclotron frequency, and collision frequency
Cimhd_to_twofluid	Boundary condition for converting ideal MHD variabls to two-fluid variables
Cpulse_inlet	Boundary condition for Plasma pulse inlet to fix Bz, density, and pressure
Cpulse_outlet	Boundary condition for Plasma pulse inlet to fix Bz, density, and pressure
►Nsimple
Cadvection	Advection
Cadvection_analytic	Advection
Cadvection_bc_flux	Single variable bc flux for advection
Cbc_dirichlet	Dirichlet boundary condition
Cbc_neumann	Homogeneous Neumann boundary condition
Cbc_oscillating	Dirichlet boundary condition that oscillates in time
Cbc_pulse	Dirichlet boundary condition that pulses from 0 to to amplitude in given time interval
Cbc_ramp	Dirichlet boundary condition that ramps from 0 to final value in time
Cdecay	Decay
Cdiffusion	Diffusion
Cdiffusion_analytic	Diffusion
Clinear_acoustics	Linear Advection (Assuming 1D for pressure and velocity perturabations)
Cmultiplier_bc	Boundary condition a = b*multiplier
Cnonlinear_diffusion	Nonlinear diffusion
►Nthirteen_moment
►Nthirteen_moment
Cfield_source	Lorentz force operator for 5-moment model
Cfreeslip_wall	Noslip wall boundary condition
Cinterspecies_collisions	Basic resistive operator between 13-moment fluids
Cintraspecies_collisions	Collisions within a species (BGK collision operator)
Cintraspecies_collisions_parabolic	Parabolic collision operator for 13-moment model
Cnoslip_wall	Noslip wall boundary condition
Cpearsoniv	Pearson-IV flux
►Nvlasovmaxwell
►Nvlasovmaxwell
Cactionmoment	Takes the "action moment" of a wave energy distribution
Cbgk	BGK Collision Operator
Cenergy_fluxmoment	Energy Moment Function of the Distribution
Cfirstmoment	First Moment Function of the Distribution
Cfive_moment_to_kinetic	5-moment to Kinetic
Cfull_dyadic_secondmoment	Full Dyadic Second Moment Function of the Distribution
Clangmuir_diffusion_coefficient	Determines diffusion coefficient for turbulent ensemble of langmuir waves
Clangmuir_energy_source	Calculates the source term for the wave kinetic equation for langmuir waves
Clangmuir_wave_kinetic_eqn	Does fluxes for the wave kinetic equation for langmuir waves
Cmaxwellian_distance_metric	Maxwellian distance metric chi = int(abs(f - fM))dv /n calculated using a moment taker
Coutflow_bc_1d1v	Applys Outflow Boundary Condition for 1D1V cases
Csecondmoment	Second Moment Function of the Distribution
Cvlasov_diffusion	Adds the flux for diffusion term in vlasov equation
Cvlasov_ponderomotive_force	Adds the acceleration term due to ponderomotive force of a turbulent ensemble of waves
Cvlasovmaxwell	Vlasov-Maxwell
Czerothmoment	Zeroth Moment Function of the Distribution
►Nclusters
►Nbugs
Cbugs
►Ncentennial
Ccentennial
►Ncerberus
Ccerberus
►Ncluster_info
Ccluster_info
►Ncori
Ccori
►Nhyak
Chyak
►Nhyak_klone
Chyak_klone
►Nhyak_mox
Chyak_mox
►Nmustang
Cmustang
►Nonyx
Conyx
►Nperlmutter
Cperlmutter
►Nzaphpc
Czaphpc
►Ndataset	WARPXM data reader helper tools for post-processing in Python
Cdataset	Represents a single simulation's dataset
Cfield	Represents a single tensor field on a subdomain at a single time
CMultiDataset	Represents a collection of datasets from similar simulations
CProbeDataset	A set of probe_field objects for one simulation
CProbeField	Represents a single probe variablefield
CProbeMultiDataset	Represents a collection of probe_datasets from similar simulations
Csubdomain	Represents a single subdomain geometry
►Ndg_sim	DG simulation using RKDG
Cdg_sim	Discontinuous finite element RK simulation
►Ndt_calc
►Nconvergence_dt
Cconvergence_dt
►Nfixed_dt
Cfixed_dt
►Nintegrating_controller
Cintegrating_controller
►Nstability_dt
Cstability_dt
►Nfunctions
►Napplicator
Capplicator	Initial condition applicator
►Nbandpass
Cbandpass	Sets a non-axis aligned cuboid region to inside_value and everywhere else to outside_value
►Nbump
Cbump	Multi-dimensional isotropic bump function of the form exp{-1/(1-x^2)} with given min/max values
►Ncouette_flow
Ccouette_flow_13moment	Initializes a 5 momment
Ccouette_flow_5moment	Initializes a 5 momment
Ccylindrical_couette_flow_5moment	Initializes a 5 momment
Chartmann_flow_mhd	Initializes a MHD hartmann flow
►Ncustom_mhd
Ccustom_mhd
►Ncustom_vlasovmaxwell
Ccustom_maxwell	Velocity distribution initialization routine
Ccustom_vlasov	Velocity distribution initialization routine
►Nein_ic
Cein_ic_5moment	Function which sets IC for 5-moment electron-ion-neutral problem
►Nein_ic_EM
Cein_ic_EM_5moment	Function which sets IC for EM fields in 5-moment electron-ion-neutral problem
►Nein_ic_phEM
Cein_ic_phEM_5moment	Function which sets IC for EM fields in 5-moment electron-ion-neutral problem
►Nflow_init
Cflow_init_5moment	Function which sets IC for simple 5-moment fluid flow problem
►Nflow_init2
Cflow_init2_5moment	Function which sets IC for simple 5-moment fluid flow problem
►Nflow_init_EM
Cflow_init_EM_5moment	Sets IC for EM fields in a simple 5-moment fluid flow problem
►Nforward_facing_step
Ceuler2d_forward_facing_step_5moment	Function which sets 5-moment fluid forward facing step problem as defined in: "Hesthaven pg 233
►Nfourier
Cfourier	Fourier series
►Ngaussian
Cgaussian	Multi-dimensional isotropic normal distribution function with capped min/max values
►Ngem
Cgem_13moment	Function which sets field to a given uniform value
Cgem_5moment	Function which sets field to a given uniform value
Cgem_5moment_1D	Function which sets field to a given uniform value
Cgem_5moment_new	Function which sets field to a given uniform value
Cgem_field	Function which sets field to a given uniform value
Cgem_field_1D	Function which sets field to a given uniform value
Cgem_hallmhd	Function which sets field to a given uniform value
Cgem_hallmhd_1D	Function which sets field to a given uniform value
►Nharris_current_sheet
Charris_current_sheet_13moment	Function which sets field to a given uniform value
Charris_current_sheet_5moment	Function which sets field to a given uniform value
Charris_current_sheet_field	Function which sets field to a given uniform value
►Nheaviside
Cheaviside	Heaviside step function
►Nkh_instability
Ckhi_13moment	Function which sets field to a given uniform value
Ckhi_5moment	Function which sets field to a given uniform value
Ckhi_maxwell	Function which sets field to a given uniform value
►Nkinetics
Cfield_1d1v_vlasov_cases	Velocity distribution initialization routine
Cmaxwellian	Function which sets a maxwellian distribution
Cvlasov_1d1v_landau_damping	Velocity distribution initialization routine for the 1d1v Landau Damping
Cvlasov_1d1v_two_stream	Velocity distribution initialization routine for the 1d1v Two stream Instability
►Norszagtang_mhd
Corszagtang_mhd
►Nplasma_switch
Cplasma_switch_13moment	Initializes a 2D plama switch pillar
Cplasma_switch_5moment	Initializes a 2D plama switch pillar
Cplasma_switch_fields	Initializes a 2D plama switch pillar
Cplasma_switch_imhd	Initializes a 2D plama switch pillar
►Npolynomial
Cpolynomial	C_i ((x - center)/norm)**i
►Npulse_fluid5
Cpulse_fluid5
►Npulse_imhd
Cpulse_imhd
►Npulses_fluid5
Cpulses_fluid5	Function which creates gaussian, polynomial, or uniform columns in a fluid
►Nramp
Cramp	Defines a linear ramp along a given direction
►Nrp
Ceuler2d_rp1_5moment	Function which sets 5-moment fluid RP1 problem as defined in: "A Simple and Effictive High-Order Shock-Capturing Limiter for Discontinuous Galerkin Methods" by Scott Moe, James Rossmanith, and David Seal, arXiv 1507.03024v1, 2015
►Nrti_instability
Crti_13moment	Function which sets field to a given uniform value
Crti_5moment	Function which sets field to a given uniform value
Crti_field	Function which sets field to a given uniform value
►Nset_to
Cset_to	Function which sets field to a given uniform value
►Nshock_tube
Celectromagnetic_shock_tube_13moment	Function which sets 13-moment fluid to brio wu shock tube conditions
Ceuler1d_arbitrary_shocktube_5moment	Function which sets 5-moment fluid to shock tube conditions arbitrary riemann problem
Ceuler1d_double_rarefaction_5moment	Function which sets 5-moment fluid to shock tube conditions double rarefaction problem
Ceuler1d_shock_entropy_problem_5moment	Function which sets 5-moment fluid to shock tube conditions for shock entropy problem as described by Moe and Rossmanith (A simple and effective high-order shock-captutring limiter for discontinuous galerkin methods: http://arxiv.org/abs/1507.03024 )
Ckinetics1d1v_arbitrary_shocktube	Function which sets 1d1v kinetics fluid to shock tube conditions arbitrary riemann problem
Ckinetics1d1v_double_rarefaction	Function which sets kinetic shock tube conditions double rarefaction problem
Cshock_tube_13moment	Function which sets 13-moment fluid to shock tube conditions
Cshock_tube_5moment	Function which sets 5-moment fluid to shock tube conditions
►Nshocktube_mhd
Cbriowu_mhd
Cdaiwoodward_mhd
►Nsinc_field
Csinc_field	Function which creates sinc function in EM field
►Nsinc_field_2d
Csinc_field_2d	Function which creates sinc function in EM field
►Nsine_field
Csine_field	Function which creates sine function in EM field
►Nslab_fluid5
Cslab_fluid5
►NTE_TM_mode
CTE_TM_mode	Bessel functions
►Ntrapezoid
Ctrapezoid	Initializes a trapezoid shaped object
►Nzpinch
Czpinch_5moment_electron_1D
Czpinch_5moment_electron_1D_Car
Czpinch_5moment_electron_2D
Czpinch_5moment_ion_1D
Czpinch_5moment_ion_1D_Car
Czpinch_5moment_ion_2D
Czpinch_field_1D
Czpinch_field_1D_Car
Czpinch_field_2D
Czpinch_field_test_1D
Czpinch_imhd_1D
Czpinch_imhd_2D
Czpinch_phfield_1D
►Nfvm_sim	Finite volume simulation using RK Reconstruction
Cfvm_sim	Higher order FVM K-Exact reconstruction RK simulation
►Ngenerator
Cblock	Represents a block element in the input file
Cwarpy_obj	Base class for all warpy objects
►Nhelpers
►Nbloch
CBlochVar	A supervariable that contains real and imaginary variables for each region specified
►Nlobc
Clobc	A class that automates Lacuna based open boundary (LOBC) setup
►Nhost_actions
►Napplicator_set
Capplicator_set
►Nboundary_conditions
►Nboundary_condition
Cboundary_condition
►Ncombo_bc
Ccombo_bc
►Ndata_loader
Cdata_loader	Loads arbitrary data from a file into a variable
►Ndiagnostics_writer
Cdiagnostics_writer
►Nerk
Cerk	Explicit Runge-Kutta temporal solver Note: Dormand45 currently will not work correctly with limiters on (limiters overwrite the stage variable data in-place)
►Nfill_value
Cfill_value	The WmFillValue class fills all components of a variable with a specified fill value from the input parameters
►Ngsync
Cgsync	Ghost sync step
►Nhost_action
Chost_action
►Nic_generate
Cic_generate
►Nintegrator
Cintegrator
►Nirk
Cirk	Implicit Runge-Kutta temporal solver Note: currently will not work correctly with limiters on (limiters overwrite the stage variable data in-place)
►Nprobe
Cprobe	Writes out variables for single node at each time point into single file
►Nprobe_diagnostic
Cprobe_diagnostic	Writes out variables for single node at each time point into single file
►Nrk_reconstruction
Crk_reconstruction	RK Reconstruction finite volume scheme
►Nrkdg
Crkdg	RK DG scheme
►Nswapper
Cswapper
►Ntest_sugdt
Ctest_sugdt	Suggested dt calculation for FVM
►Ntimed_swapper
Ctimed_swapper	Swaps two like variables, internalized storage remains, while outer shell naming is swapped
►Nunique_variable_diagnostic
Cunique_variable_diagnostic	Writes out variables for unique variable at each time point into single file
►Nva_runner
Cva_runner	Runs a list of host actions
►Nvariable_loader
Cvariable_loader	Loads a variable
►Nwriter
Cwriter	Writes out a list of variables
►Nhyperapps
►Nbraginskii	Braginskii related hyperapps
Cbraginskii_flux
Cbraginskii_source
►Neuler_roe
Ceuler_roe
►Nfield_source_5mom
Cfield_source_5mom
►Nhyperapp
Chyperapp
►Npcmaxwell
Cpcmaxwell
►Nintegrators
►Nintegrators
Cdg_integrator	Dg_integrator This integrator takes into account element geometry and sums for integrating a function spatially
Cdg_max_integrator	Dg_max_integrator This integrator ignores element geometry and simply finds the max
Cpatch_process_integrator	Patch_process dg_integrator
►Nmesh
Carbitrary	General unstructured mesh
Cblock	Block mesh generator
Cmesh	Unstructured mesh
►Npost_processing
►Nband_diagrams
►Nanalytical_1d
CBands1D	Base class for 1D photonic band objects
►Nanalytical_2d
CBands2D	Base class for 2D photonic band objects UNFINISHED!!! Needs to be generalized to more than just 2D sine functions
►Ndensity_profiles	Classes for density profiles used in analytical band diagram calculations
CDensity1D	Density profile base class
CDensity1DArb	Child of Density1D for arbitrary density functions
CDensity1DBox	Child of Density1D for box car density functions
CDensity1DDirichlet	Child of Density1D for Dirichlet density functions
CDensity1DFourierArb	Child of Density1D for Dirichlet density functions
CDensity1DSine	Child of Density1D for sine wave density functions
►Npost1d
Cpost_process_1d	Post processing utilities for 1D simulations
►Npost2d
Cpost_process_2d	Post processing utilities for 2D simulations
►Nprobes
CProbePostProc	Post processing utilities for probes
►Nrkdg_sim	DG simulation using RKDG
Crkdg_sim	Discontinuous finite element RK simulation
►Nsimulation
Csimulation	Simulation base class
►Nsolver_sequence	Solver sequence
Csequence_group
Csolver_sequence
►Nspatial_solvers
►Nndg
Cndg	Nodal discontinuous galerkin method
Cndg_kinetic	Discontinuous galerkin method applied to kinetic problems
Cndg_kinetic_old	Discontinuous galerkin method applied to kinetic problems
Cunique_variable_solver	Calculates RHS for a unique variable ODE advance
►Nspatial_solver
Cspatial_solver	Spatial solver - currently hardcoded for rk methods
►Nvariable
Cunique_variable
Cvariable
►Nvariable_adjusters
►Nauxiliary_variables
►Nauxiliary_variables
Cdivergence_integral_by_parts	Divergence_integral_by_parts solves for v in v + div(F) = S in weak form by splitting the flux integral into parts like in dg
►Nboundary_conditions
Cboundary_conditions	Spatial solver - currently hardcoded for rk methods
Ckinetic_boundary_conditions	Spatial solver - currently hardcoded for rk methods
Ckinetic_boundary_conditions_old	Spatial solver - currently hardcoded for rk methods
►Ndg_gradient
Cdg_gradient	Dg_gradient solves for gradients for the dg interface
Cdg_gradient_interior_penalty_internal_approximation	Dg_gradient solves for gradients for the dg interface
Cphase_space_gradient	Phase_space_gradient solves for gradients for the dg interface in phase space
►Ndiffusion_coefficient
Ccalculate_diffusion_coefficient	Calculate a a diffusion coefficient in QL approximation
►Nfunction_evaluation
Cfunction_evaluator	Function evaluator
Cphase_space_function_evaluator	Phase_space function evaluator
Cunique_variable_function_evaluator	Unique variable function evaluator
►Nlimiters
►Ndg_ceno
Cdg_ceno	Dg_ceno is a limiting scheme for the dg method
►Ndg_moe_rossmanith
Cdg_moe_rossmanith	Dg_moe_rossmanith is a limiting scheme for the dg method
►Ndg_positivity_enforcing_limiter
Cdg_euler_positivity_enforcing_limiter
Cdg_mhd_positivity_enforcing_limiter
►Ndg_tu_alibadi
Cdg_tu_alibadi	Dg_tu_alibadi is a limiting scheme for the dg method
►Nmoment_takers
Cvelocity_space_moment_taker	Velocity_space_moment_taker takes moments in velocity space
Cvelocity_space_moment_taker_old	Velocity_space_moment_taker takes moments in velocity space
►Nunique_variable_adjuster
Cboundary_flux_integral	Boundary flux integral for unique variables
Cboundary_line_integral	Boundary line integral for unique variables
►Nvariable_adjuster
Cvariable_adjuster	Spatial solver - currently hardcoded for rk methods
►Nxdmf
►Ngenerator
Cattribute	Some sort of attribute/variable on a grid
Cblock	Represents some Xdmf block
Centity	An entity wrapper
Cgrid	Some sort of xdmf
Citem	Some sort of xdmf item
Ctime
Ctopology
Cxdmf	Root XDMF block
►NWmUDGFunctions
CtypeString
CtypeString< double >
CtypeString< float >
CtypeString< int >
CtypeString< unsigned >
►Nwxm	Base namespace for everything not included in the global namespace
►Napps
►Nanalytic_solutions
CAdvection	Class that calculates the analytic solution Advection Equation
CDiffusion	Class that calculates the analytic solution Diffusion Equation
►Nbc
►Nflux_bc
►Nadvection
CAdvectionBCFlux	Flux Bounary Condition for Advection Equation This boundary condition is meant to set the boundary condition for the advection equation It should just choose the upwinding solution for the flux
►Nfive_moment
CFiveMomentFreeslipWallBCFlux	Freeslip Wall Flux Boundary Condition This boundary condition is meant to set the boundary condition on a freesslip wall for 5-Moment This just sets the local x momentum flux to the presssure This isn't really correct as it is not the solution to the Riemann problem in which the velocity is supposed to flip signs from left to right, so really you need to solve the Riemann problem properly (which will depend on weather you get 2 shocks, 2 rarefaction waves, or some other combination) or put in the soluition of a approximate Riemann Solve directly
CKineticToFiveMomentFluxBC	Kinetic to 5 Moment Flux Boundary Condition This sets the numerical flux that for the fluid model at the boundary interface between the fluid and kinetic model
Cantenna_single_freq_bc_t
Cdirichlet_t
Cneumann_t
Coscillating_t
CPulse
Cramp_t
►Nfive_moment
►Nbc
Caxis_5moment	Five moment axis boundary condition
Caxis_5moment_gradients
CEinBc
Cfreeslip_wall	Five moment free slip wall boundary condition
Cfreeslip_wall_gradients_yu
Cfreeslip_wall_yu	Five moment free slip wall boundary condition
CFreeslipWallGradients
Cimhd_to_twofluid	Boundary condition for converting ideal MHD variabls to two-fluid variables
Ckinetic_to_5moment
Cnoslip_wall
Cnoslip_wall_gradients
Cpulse_inlet	Plasma slug acceleration inlet boundary condition for two-fluid
Cpulse_outlet	Plasma slug acceleration outlet boundary condition for two-fluid Same as pulse_inlet, except has Neumann BC for B
Creflecting_wall
Csheath_bc
CWmApplication_5Moment_BC_Copyout
►Nlimiters
Cartificial_viscosity_limiter_historical_t	Class used implementing artificial viscosity limiter based on velocity divergence Adds a diffusion term to the equation based on the compressibility of the fluid Applied on the momentum equation for p=(px,py,pz) Uses Local Discontinuous Galerkin or Interior Penalty d/dt (p) + div (-nu * m * grad u) = 0 where nu is the viscosity coefficient m is an extra multiplier which is either: |div u|, or (div u)^2
Cartificial_viscosity_limiter_meier	Class used implementing artificial viscosity limiter based on velocity gradient as desribed in Eric Meier Dissertation (2011, Univ
Cartificial_viscosity_limiter_t	Class used implementing artificial viscosity limiter based on velocity divergence Adds a diffusion term to the equation based on the compressibility of the fluid Applied on the momentum equation for p=(px,py,pz) Uses Local Discontinuous Galerkin or Interior Penalty d/dt (p) + div (-nu * m * grad u) = 0 where nu is the viscosity coefficient m is an extra multiplier which is either: |div u|, or (div u)^2
CArtificialDissipation	Class used implementing artificial dissipation limiter that uses divergence of velocity as a shock sensor, similar to Von Neumann and Richtmyer, J
CArtificialDissipationCylSource	Implements the source terms for artificial dissipation limiter arising from a cylindrical geometry
Cq_h_artificial_dissipation	Implements artificial viscosity and heat flux for the 5 moment Euler/Navier Stokes equations
CAppSetupHelper	Helper class that automates common setup tasks for 5-moment fluid physics applications
Cbraginskii_flux
CConservedPrimitiveConversion
CDensityDiffusionCylSource
CDensityDiffusionFlux
CEuler	Euler flux
CEuler1D_Riemann_Problem_Analytic_Solution	Class that calculates the analytic solution to the Riemann Problem for the Euler Equations
CEulerCylSource	Implements the source terms in the Euler equations arising from a cylindrical geometry
Cfield_source_t
Cfive_moment_to_kinetic	5-Moment to Kinetic Boundary Condition App
Cgeneral_source_t
CInterspeciesCollisions
CIntraspeciesCollisions	Implements Navier-Stokes style collisions
CIntraspeciesCyl	Implements the source terms for intraspecies collisions arising from a cylindrical geometry
Cnavier_stokes_t
Creaction_source_mol_t
Creaction_source_t	Implements source terms for atomic reactions
►Nfunctions
►Narbitrary
CBandpass
CBump
CCopyVals	This function simply copies input to output
CFourier
CGaussian
CGetSource	This function takes any source app and writes source to a specified output variable
CHeaviside
CLinearInterpolation1D	Given a set of monotonically increasing time values and a corresponding set of field values $f(t)$, this class will return an estimated value of $f(t)$, given an arbitrary $t$, using linear interpolation
CMultiplier
CPolynomial
CRamp
CSetTo
CSine2D
CStationaryCylindricalHyperdiffusionBump	The StationaryCylindricalHyperdiffusionBump is the stationary solution to
CTE_TM_Mode
CTrapezoid	Initializes a trapezoidal shape
►Nfive_moment
CConstantFluidIC
CCouetteFlow
CCylindricalCouetteFlow
CEinIC	Class to set IC for a simple flow problem
CElectronZpinch1d
CElectronZpinch1dCar
CElectronZpinch2d
CEuler1dArbitraryShocktube	Euler Arbitrary Shocktube Function
CEuler1dDoubleRarefaction	Double Rarefaction 1D Riemann Problem See: Buffard and Clain -> Monoslope and multislope MUSCL methods for unstructured meshes Journal of Computational Physics, 229 (2010) 3745-3376 https://ac.els-cdn.com/S0021999110000495/1-s2.0-S0021999110000495-main.pdf?_tid=e51b7b8a-8b83-4578-a6e6-e338b59cf38a&acdnat=1524338362_0ddf7d2efc1b73e6510cbe8f19b53250
CEuler1dShockEntropy
CEuler2dForwardFacingStep
CEuler2dRP1
CFlowInit	Class to set IC for a simple flow problem
CFlowInit2	Class to set IC for a simple flow problem
CGEM
CGEM1D
CGEM2
CHarrisCurrentSheet
CIonZpinch1d
CIonZpinch1dCar
CIonZpinch2d
CKH_Instability	Initialization and boundary conditions for electromagnetic Rayleigh-Taylor and Kelvin-Helmholtz instability defined using piecewise discontinuous values
CKH_Instability_Analytic	Initialization and boundary conditions for electromagnetic Rayleigh-Taylor and Kelvin-Helmholtz instability defined using analytic functions described in Vogman PoP 2020 Eqs
CKinetics2d2vKelvinHelmholtzInstabilityFluidVariables	2D2V Kelvin-Helmholtz Instability where the kinetic variables are converted to fluid Used in hybrid simulation where the domain in split into kinetic and fluid parts, with this function initilizing the fluid
CLangmuirDispersion
CManualDensityAndPressureFluid5	Function allowing density and pressure to be set by subfunctions
CPlasmaSwitch	Initialize the simplified 2D plasma switch problem for a single 5 moment fluid
CPulseFluid5
CPulsesFluid5
Cradial_slab	A spherical slab of fluid with a given radius and center
CRTI_Instability	I think this is a combination of hydrodynamic Rayleigh-Taylor and Kelvin-Helmholtz instabilities??
CSetFloorsIonsElectrons	Class to set Density and Pressure floors for ions and electrons for two-fluid case
CSetFloorsSingleSpecies	Class to set Density and Pressure floors for a single species
CShockTubeFluid5
CSlabFluid5
Ctwo_stream	Class to set IC for 1D counter-streaming electrons and ions
►Nkinetics
CCounterStreamingBeams2d2v
CGeneralMaxwellianTwoStream	General Maxwellian Two-Stream Instability Initial Condition We initialize 2 counterstreaming Maxwellian plasma beams: f(x,v_x, v_y) = 1/2 * n_0/((2pi)^0.5*v_th) * (exp(-(v_x-v')^2/(2 v_th^2)) + exp(-(v_x+v')^2/(2 v_th^2))) f(x,v) = fM_1 + fM_2 where fM_i == n_i * (1/2pi / v_th_i^2)^d/2 * exp( -1/2 / v_th_i^2 (|v-V_i|^2))
CKinetics1d1vArbitraryShocktube	Double Rarefaction 1D Riemann Problem See: Buffard and Clain -> Monoslope and multislope MUSCL methods for unstructured meshes Journal of Computational Physics, 229 (2010) 3745-3376
CKinetics1d1vDoubleRarefaction	Double Rarefaction 1D Riemann Problem See: Buffard and Clain -> Monoslope and multislope MUSCL methods for unstructured meshes Journal of Computational Physics, 229 (2010) 3745-3376
CKinetics1d1vLandauDamping	1D1V Landau Damping Initial Condition This is a Maxwellian distribution of f in velocity space multiplied by a sinusoidal variation in position space, given by the form: f(x,v_x) = n_0/((2pi)^0.5*v_th) exp(-v_x^2/(2v_th)^2) * (1 + alpha cos(kx)) See the paper: Physics-Based-Adaptive Plasma Model for High-Fidelity Numerical Simulations https://www.frontiersin.org/articles/10.3389/fphy.2018.00105/full Equation 119
CKinetics1d1vTwoStream	1D1V Two-Stream Instability Initial Condition We initialize 2 counterstreaming plasma beams: f(x,v_x) = 1/2 * n_0/((2pi)^0.5*v_th) * (exp(-(v_x-v')^2/(2 v_th^2)) + exp(-(v_x+v')^2/(2 v_th^2))) * (1 + alpha cos(kx)) See the paper: Physics-Based-Adaptive Plasma Model for High-Fidelity Numerical Simulations https://www.frontiersin.org/articles/10.3389/fphy.2018.00105/full Equation 122
CKinetics1d2vDoryGuestHarris	1D2V Dory-Guest-Harris Initial Condition We initialize a ring distribution with a perturbation, equations 29 and 30 in Vogman JCP2014 f(x, v_{x}, v_{y}) = \frac{1}{\pi \alpha_{\perp}^2 j!} \left(\frac{v_{x}^2+v_{y}^2}{\alpha_{\perp}^2}\right)^j \exp\left(-\frac{v_{x}^2+v_{y}^2}{\alpha_{\perp}^2}\right) \left(1 + \epsilon \sin\left(4\theta -\frac{\tilde{k}\Omega_{c}}{v_{\perp 0}}x\right)\right)
CKinetics2d2vDoryGuestHarris	2D2V Dory-Guest-Harris Initial Condition We initialize a ring distribution with a perturbation, extending the 1d2v form given equations 29 and 30 in Vogman JCP2014 to 2D2V f(x, y, v_{x}, v_{y}) = \frac{1}{\pi \alpha_{\perp}^2 j!} \left(\frac{v_{x}^2+v_{y}^2}{\alpha_{\perp}^2}\right)^j \exp\left(-\frac{v_{x}^2+v_{y}^2}{\alpha_{\perp}^2}\right) \left(1 + \epsilon \sin\left(4\theta -\boldsymbol{k}_{\perp} \cdot{\boldsymbol{r}}\right)\right)
CKinetics2d2vKelvinHelmholtzInstability	2D2V Kelvin-Helmholtz Instability Based on calculated kinetic equilibrium
CKinetics2d2vKelvinHelmholtzInstabilityFluidMaxwellian	2D2V Kelvin-Helmholtz Instability using the Maxwellians as the initial condition for the distributions
CKineticsDriftingMaxwellian	A drifting maxwellian with perturbation initial condition
CKineticsInitialConstant	An initial constant initial condition for the wave energy distribution IC
CKineticsPressureEquilibrium	A drifting maxwellian with density variation in pressure equilibrium
CLandauDamping2d2v	2D2V Landau Damping Initial Condition This is a Maxwellian distribution of f in velocity space multiplied by a sinusoidal variation in position space, given by the form: f(x,y,v_x,v_y) = n_0/((2pi)*v_th^2) exp(-(v_x^2 + v_y^2)/(2v_th)^2) * (1 + alpha_x cos(kx) + alpha_y cos(ky))
CMaxwellian	Initailize Maxwellian Distribution
CVlasovMaxwellCustom	Initailize VlasovMaxwellCustom Distribution
CWeibelCustom	Calculates the difference between a fed-in IC and a General Maxwellian Two-Stream conditions, weights this difference, and adds it back
►Nmaxwell
CCustomMaxwell
CDivergenceError	Divergence Error Calculation This calculates the divergence error for diagnostic purposes THIS IS NOT MEANT TO BE AN INITIAL CONDITION PsiE = 1/(omega_p tau)^2 * (L / dp) * Div(E) - rho_c PsiB = Div(B)
CEinICEM	Class to set IC on EM fields in 5-moment problem
CFieldZpinch1d
CFieldZpinch1dCar
CFieldZpinch2d
CFieldZpinchTest1d
CFlowInitEM	Class to set IC for electromagnetic fields in a simple flow problem
CGEM
CGEM1D
CHarrisCurrentSheet
CHartmannField
CKH_Instability	Initialization and boundary conditions for electromagnetic Rayleigh-Taylor and Kelvin-Helmholtz instability defined using piecewise discontinuous values
CKH_Instability_Analytic	Initialization and boundary conditions for electromagnetic Rayleigh-Taylor and Kelvin-Helmholtz instability defined using analytic functions described in Vogman PoP 2020 Eq
CKHInstability2d2vKineticSetup	2D2V Kelvin-Helmholtz Instability for Fields Based on calculated kinetic equilibrium Should be consistent with 2d2v_kh_instability.h/cc in function_evaluators/kinetics
CKinetics1d1vLandauDampingField	1D1V Landau Damping Initial Condition for the Fields This is an Ex (1D Electric) Field consistent with a Maxwellian distribution with sinusoidally-varying spatial variation with a uniformly-distributed opposite chage: E_x(x) = +Z_i n_0 (omega_p tau)^2 (delta_p/L) (alpha/k) sin(kx) See the paper: Physics-Based-Adaptive Plasma Model for High-Fidelity Numerical Simulations https://www.frontiersin.org/articles/10.3389/fphy.2018.00105/full Equation 121
CKinetics2d2vLandauDampingField	2D2V Landau Damping Initial Condition for the Fields This is an (Ex, Ey) (2D Electric) Field consistent with a Maxwellian distribution with sinusoidally-varying spatial variation with a uniformly-distributed opposite charge: E_x(x) = +Z_i n_0 (omega_p tau)^2 (delta_p/L) (alpha_x/k_x) sin(k_x * x) E_y(y) = +Z_i n_0 (omega_p tau)^2 (delta_p/L) (alpha_y/k_y) sin(k_y * y)
CLangmuirDispersionField
CPlasmaSwitchFields	Initialize the EM fields for the simplified 2D plasma switch problem with a normalized Poynting vector [1,0,0]
CRTI_Instability	Field setup for combination of hydrodynamic Rayleigh-Taylor and Kelvin-Helmholtz instabilities??
CSincField
CSincField2d
CSineField
CUniformMaxwell	Input uniform field values
►Nmhd
CAccel1d
CBennettEquilibrium	Bennett Equilibrium for Ideal MHD Should Work for Cylindrical and Cartesian cases Ref
CBrioWuShockTube
CCopyPressure	Implements a calculation of MHD pressure
CDaiWoodwardShockTube
CGEM
CGEM1D
CHartmannMHD
CMHD_Custom
COrszagTang	Orszag-Tang Problem setup for MHD See: http://www.csun.edu/~jb715473/examples/mhd2d.htm
CPlasmaPulse	Initializes a simple plasma pulse
CSetFloors	Class to set density and pressure floors for MHD fluid
CZpinch1d
CZpinch2d
►Nphmaxwell
CEinICphEM	Class to set IC on EM fields in 5-moment problem
CZpinch1d
►Nthirteen_moment
CBrioWu
CCouetteFlow	Initialize the simplified 2D plasma switch problem for a single 5 moment fluid
CFluid13Custom
CGEM
CHarrisCurrentSheet
CHartmannFluid13
CPlasmaSwitch	Initialize the simplified 2D plasma switch problem for a single 5 moment fluid
CPulseFluid13
CPulsesFluid13
CRandomVelocityFluid13
CShockTubeFluid13
CSincFluid13
►Nunique_variable
CAdder	Add unique variables together
CCircuitIC	Class to set initial condition of a circuit with 2 variables: [Q0, Qdot0] for a charge solve, or possibly [I0, Idot0] for a current solve
CDoubleModuleRLCWithLoadRHS	Class to set RHS for double module RLC circuit with discharging capacitor, resistance, and inductance, out of each module
CIload	Class to calculate Iload = sum I_modules = - sum Qdot_modules It assumes a currents in number of modules add up together to a load current using Kirchoff's Circuit Law
CSeriesRLCWithLoadRHS	Class to set RHS for RLC circuit with discharging capacitor and a load voltage Kirchoff's Voltage Law (KVL): V_C - V_L - V_R - V_load = 0 I = -Qdot V_C = Q / C V_L = Idot L = -Qdouble_dot L V_R = I R = -Qdot R Substitution leads to Qdouble_dot = V_load / L - Qdot R / L - Q / L / C We are solving: dqdt = RHS(t) where q = [Q, Qdot] then dqdt = [Qdot, Qdouble_dot] = [Qdot, V_load / L - Qdot R / L - Q / L / C]
CSubmoduleRLCWithLoadRHS	Class to set RHS for N-module RLC circuit with discharging capacitor, resistance, and inductance, out of each module
►Nhallmhd
►Nbc
CConductingWallFreeslipGradients	Class to set gradient variables for conducting wall for Hall MHD
►Nhyperresistivity
CElectricFieldEffect	Takes an Electric field term in Ohms Law as defined by the user and applies this to the Hall MHD equations (energy and B induction equations)
CElectricFieldEffectCylSource	Cylindrical Source Term companion to ElectricFieldEffect
COhmsLaw	Calculates the internal (or analytic) flux term for the hyperresistive term of Ohm's Law: E + nu nabla^2 J = 0, or E_i
COhmsLawCylSource	Calculates the Cylindrical Source term for the hyperresistive term of Ohm's Law:
CCylSource	Implements the source terms in the Hall terms that are added to Ideal MHD to produce the Hall MHD equations arising from a cylindrical geometry
CWmApplication_HALLMHD
►Nimhd
►Nbc
CConductingWallFreeslip	This applies the Conducting Wall Freeslip using a subapplication function around a WmICFunction which dictates the magnetic field so that we can set Bnormal to constant
Cfreeslip_wall	Ideal mhd free slip wall boundary condition
CImhdBCCopyoutGradients
Cpulse_inlet	Plasma slug acceleration inlet boundary condition for ideal MHD
Cpulse_outlet	Plasma slug acceleration outlet boundary condition for ideal MHD Only difference between this and pulse_inlet is this has Neumann B
CWmApplication_Imhd_BC_ConductingWallFreeslip
CWmApplication_Imhd_BC_ConductingWallFreeslip_Gradients
CWmApplication_Imhd_BC_ConductingWallNoslip
CWmApplication_Imhd_BC_ConductingWallNoslip_Gradients
CWmApplication_Imhd_BC_Copyout
CConservedPrimitiveConversion
CCylSource	Implements the source terms in the Ideal MHD equations arising from a cylindrical geometry
CInjectionSource	Plasma source injection source for ideal MHD
Creaction_source_t	Implements source terms for atomic reactions
CTimedSource	This plasma source allows for plasma between times t_start and t_end using the same bump function style as the injection_source
Ctwofluid_to_imhd	Boundary condition for converting two-fluid variables to ideal MHD variables
Ctwofluid_to_imhd_consistent_assumption	Boundary condition for converting two-fluid variables to ideal MHD variables
CWmApplication_IMHD_Flux
►Nkinetics
►Nboundary_conditions
COutflowBC1d1v
►Nmaxwell
Caxis_maxwell_gradient_t
Caxis_maxwell_t
Caxisymmetric_fluid_source_1D_t
Caxisymmetric_fluid_source_2D_t
Cconducting_wall_gradient_t
Cconducting_wall_gradient_yu_t
Cconducting_wall_t
Cconducting_wall_yu_t
CCylSource	Implements the source terms in Maxwell equations arising from a cylindrical geometry
Cfluid_source_t
Cgeometric_source_1D_t
Cimhd_to_maxwell	Virtual boundary condition for converting ideal MHD variables to Maxwell variables
Cmaxwell_t
Cmaxwell_to_maxwell	Virtual boundary condition for passing Maxwell field variables to Maxwell variables
Coscillating_wall_t
Csinc_absorbing_wall_t
Csinc_wall_t
CWmApplication_Maxwell_BC_Copyout
CZpinch_1D_Field_Analytic_Solution
►Nmhd
►Nanalytic_solutions
CHartmann_flow	Class that calculates the analytic solution to the Hartmann Flow Problem for the MHD Equations
►Nbc
CAxisBC
CAxisBCGradients
CMinusElectricFieldDotTangent	Class that calculates E dot t Used for calculating potential, phi = -\int_a^b(E dot t)dl
►Ndivergence_cleaning
CDednerMixedGLM	Implements the mixed Generalized-Lagrange Multiplier version of divergence cleaning in: Dedner et al., JCP 175, 645-673 (2002)
CParabolic	Class used to parabolic divergence cleaning
►Nlimiters
CArtificialDissipation	An artificial dissipation limiter for MHD that uses divergence of velocity as a shock sensor
CArtificialDissipationCylSource	Cylindrical source terms for the MHD artificial dissipation limiter
CArtificialViscosityLimiter	Class used implementing artificial viscosity limiter based on velocity divergence Adds a diffusion term to the equation based on the compressibility of the fluid Applied on the momentum equation for p=(px,py,pz) Uses Local Discontinuous Galerkin or Interior Penalty d/dt (p) + div (-nu * m * grad u) = 0 where nu is the viscosity coefficient m is an extra multiplier which is either: |div u|, or (div u)^2
CArtificialViscosityLimiterMeier	Class used implementing artificial viscosity limiter based on velocity gradient as desribed in Eric Meier Dissertation (2011, Univ
►Nradiation
CBlackBody	Class used to implement blackbody radiative cooling de/dt = - C n T^4 This can be related to a volumetric cooling rate defined in Mikellides MRNAS2011 de/dt = - a c rho chi_p T^4 Here: a = Stefan's constant, a = 4 sigma / c = 7.565767E-16 [J m^-3 K^-4] / kB^4 where kB = 1.380649E-23 J K^-1 to express a in units of [m^-3 J^-3] c = speed of light [m s^-1] rho = mass density [kg m^-3] chi_p = mean Planck opacity [m^2 kg^-1] such that photon mean-free-path is 1/chi_p T = temperature in [J] This gives units of [W m^-3] for de/dt Equating this formulation of de/dt = - C n T^4 for a chosen C C = a c rho chi_p / n * chosen_factor [J^-3 s^-1] This C constant is passed into this class and should be normalized (multiplied by T0_J^3 * tau)
CBremsstrahlung	Class used to implement Bremsstrahlung radiative cooling de/dt ~ -n^2 T^0.5 Specifically see Goldston & Rutherford (1995) Sec
CLineRadiation	Class used to implement an approximate impurity line radiative cooling model
CVacuumRadiation	Class used to implement "vacuum radiation", i.e., radiation that is large where density is less than user-specified vacuum density de/dt = - C f_vacrad where f_vacrad = 0.5 * (1 - cos((T - T0) / (T1 - T0))) : T0 > T > T1 f_vacrad = 1 : T >= T1 f_vacrad = 0 : T <= T0
CAppSetupHelper	Helper class that automates common setup tasks for mhd physics applications
►Npcmaxwell
Cconducting_wall_neumann
CFluidSource
Cpcmaxwell_t
►Nphmaxwell
Caxisymmetric_fluid_source_1D_t
Cconducting_wall_gradient_t
Cconducting_wall_t
Cconducting_wall_yu_t
CCylSource	Implements the source terms in phMaxwell equations arising from a cylindrical geometry
Cfluid_source_t
Coscillating_wall_t
Cphmaxwell_t
Csinc_wall_t
CWmApplication_PHMaxwell_BC_Copyout
►Nplasma
Cfrequency_check_13moment_t
Cfrequency_check_5moment_t
►Nrmhd
►Nbc
CConductingWallFreeslipGradients
CFlowthroughWall
CFlowthroughWallGradients
CInsulatorInlet2DCyl	Sets inlet insulator BC in 2D z-r axisymmetric zpinch
CInsulatorInlet2DCylGradients	Sets gradients for inlet insulator BC in 2D z-r axisymmetric zpinch
Cpn_bc
Cpn_bc_gradients
CPorousInsulatorInlet2DCyl
CPorousInsulatorInlet2DCylGradients
CWmApplication_Rmhd_BC_NoslipWall
CCurrentDensity	Class that calculates the current gradient J from deritives of B: That is, J = skin_depth_norm * curl(B)
CCylSource	Implements the source terms in the resistitive diffusion terms that are added to Ideal MHD to produce the resistive MHD equations arising from a cylindrical geometry
CDensityDiffusionCylSource	Cylindrical source for density diffusion in the MHD model
CDensityDiffusionFlux	Density diffusion flux for the MHD model
CElectricField	Class that calculates the electric field from Ohm's Law using ideal and resistive terms E = -u x B + (dp/L) * (nupt) * eta * J
Cohmic_source_t	Class that calculates a source associated with reduced Ohmic heating
CWmApplication_Resistive_Diffusion
►Nthirteen_moment
Cfield_source_t
Cfreeslip_wall_t
Cinterspecies_collisions_t
Cintraspecies_collisions_parabolic_t
Cintraspecies_collisions_t
Cnoslip_wall_t
Cpearsoniv_t
►Nviscousmhd
Cintraspecies_collisions_t	Intraspecies collisions for MHD
CIntraspeciesCyl	Implements the source terms for intraspecies collisions arising from a cylindrical geometry
►Nvlasovmaxwell
CDyadicMonomialMoments
CEnergyFluxMoment	Computes the moment which becomes the Fluid Energy Flux Gamma = Full velocity space integral of vec{v}(1/2 A_{alpha} vec{v}^2 f_{alpha}) d^{3}vec{v} or \Gamma = \iiint \boldsymbol{v} \left(\frac{1}{2} A_{\alpha} v^2 f_{\alpha}\right) d^3\boldsymbol{v} where alpha is the species We find from moments of the Boltzmann equation: Gamma = e_{alpha} vec{v}_{alpha} + P_{alpha}vec{v}_{alpha} + \vec{h}_{alpha} or \Gamma = e_{\alpha} \boldsymbol{v}_{\alpha} + P_{\alpha} \boldsymbol{v}_{\alpha} + \boldsymbol{h}_{\alpha}
CFullDyadicSecondMoment	Computes the Full Dyadic Second Moment which becomes the Fluid Momentum Flux Gamma = Full velocity space integral of vec{v}(A_{alpha} vec{v} f_{alpha}) d^{3}vec{v} or \Gamma = \iiint \boldsymbol{v} \left(A_{\alpha} \boldsymbol{v} f_{\alpha}\right) d^3\boldsymbol{v} where alpha is the species We find from moments of the Boltzmann equation: Gamma = A_{alpha}n_{alpha} vec{v}_{alpha}vec{v}_{alpha} + P_{alpha} or \Gamma = A_{\alpha}n_{\alpha} \boldsymbol{v}_{\alpha}\boldsymbol{v}_{\alpha} + P_{\alpha}
CMaxwellianDistanceMetric	Computes the Maxwellian Distance Metric chi = int(abs(f - fM))dv / n
Cadvection_t
Cbloch_periodic_bc	Virtual Bloch-Floquet periodic boundary condition for an arbitrary variable
Cdecay_t
Cdiffusion_t
Clinear_acoustics_t
Cmultiplier_bc
Cnonlinear_diffusion_t
►Narray
Carray_allocation_t
Cpatch_array_t
►Ndetail
Ccreator_base	Implementation detail so deletion happens correctly
Cwxany_arithmetic_caster	Helper for casting any arithmetic type to any other arithmetic type
Cwxany_avector_caster	Helper for casting to a vector of arithmetic types from other vectors of arithmetic types or from a single arithmetic type
Cwxany_caster	Helper for casting between various types
Cwxany_caster< bool >
Cwxany_caster< char >
Cwxany_caster< double >
Cwxany_caster< float >
Cwxany_caster< int >
Cwxany_caster< long >
Cwxany_caster< long long >
Cwxany_caster< short >
Cwxany_caster< std::string >
Cwxany_caster< std::vector< bool > >
Cwxany_caster< std::vector< char > >
Cwxany_caster< std::vector< double > >
Cwxany_caster< std::vector< float > >
Cwxany_caster< std::vector< int > >
Cwxany_caster< std::vector< long > >
Cwxany_caster< std::vector< long long > >
Cwxany_caster< std::vector< short > >
Cwxany_caster< std::vector< std::string > >
Cwxany_caster< std::vector< unsigned char > >
Cwxany_caster< std::vector< unsigned int > >
Cwxany_caster< std::vector< unsigned long > >
Cwxany_caster< std::vector< unsigned long long > >
Cwxany_caster< std::vector< unsigned short > >
Cwxany_caster< unsigned char >
Cwxany_caster< unsigned int >
Cwxany_caster< unsigned long >
Cwxany_caster< unsigned long long >
Cwxany_caster< unsigned short >
Cwxany_string_caster	Helper for casting to a string type
Cwxany_svector_caster	Helper for casting to a vector of strings
►Ndfem
►Narray
Cpatch_array_t	Defines a dataset associated with a patch of the domain This class will be used for discontinuous FEM methods
Csubdomain_array_t	Used to represent a scalar existing on a basis within a portion of the domain (subdomain)
CUniquePatchArray	Defines a dataset associated with a patch of the domain which has a single value This class will be used for discontinuous FEM methods
CUniqueSubdomainArray	Used to represent a scalar existing within a portion of the domain (subdomain) where vector size is 1
►Nsolver
►Ndg
Cndg_t	Used for solving the discontinuous Galerkin method
CNDGKinetic	Used for solving the discontinuous Galerkin method for kinetic problems
CUniqueVariableSolver	Used for solving the RHS for a unique variable for some time integrator advance
Cspatial_solver_t	The WmSpatialSolver class is a base class for spatial sovers
►Nsync
►Ntools
Ccomponent_exchange_t	Used to exchange a component between two sets of patches
Ccomponent_patch_exchange_t	Used to exchange information between two patches
Cpatch_exchange_t	Used to exchange sets of components existing between two patches
Crank_exchange_t	Used to exchange sets of components existing between sets of patches on different ranks
Csync_chunk_t
Csync_link_t
Cpatch_synchronizer_t
Crank_synchronizer_t
CUniqueVariablePatchSynchronizer	Class for Unique Variable Patch Synchronizer This is basically empty because this is not synchronized, instead some MPI barrier is used such as allreduce to get the value on all processes
CUniqueVariableRankSynchronizer	Class for Unique Variable Rank Synchronizer This is basically empty because this is not synchronized, instead some MPI barrier is used such as allreduce to get the value on all processes
►Ntools
Cscope_t
►Nvariable
Cdistributed_component_t
Cdistributed_variable_t
CUniqueDistributedComponent	Class for Unique Distributed Component
CUniqueDistributedVariable	Class for Unique Distributed Variable
►Nvariable_adjuster
►Nauxiliary_variables
CDivergenceIntegralByParts	This class solves: $\boldsymbol{v} + \nabla\cdot \bar{\bar{F}} = \boldsymbol{S}$ in weak form for auxiliary variable $\boldsymbol{v}$ by parts in same manner as with DG
►Nboundary_condition
Cboundary_condition	Applies boundary conditions to a dataset
CKineticBoundaryCondition	The Kinetic Boundary Condition class applies phase space boundary conditions The logic of this module is to apply phase space boundary conditions by identifying boundary nodes in physical space and projecting these up into phase space and applying the phase space boundary conditions according to given apps
►Ndiffusion_coefficient
CCalcDiffusionCoefficient	This diffusion coefficient class calculates QL diffusion coefficients based on integrals over wavenumber space of certain classes of waves the waves are classified by dispersion relations which are app-specific
►Nfunction_evaluation
Cfunction_evaluator
CPhaseSpaceFunctionEvaluator
►Ngradient
Cgradient	The WmVariableAdjusterGradient class is a gradient adjuster
Cgradient_interior_penalty_internal_approximation	The WmVariableAdjusterGradient class is a gradient interior penalty approximation variable adjuster
►Nlimiter
►Npositivity_enforcing
CEulerLimiterHelper	Helper class for the NDGEulerPositivityPreservingLimiter
CMHDLimiterHelper	Helper class for the NDGMHDPositivityPreservingLimiter
CNDGEulerPositivityPreservingLimiter	Simple scaling limiter which enforces positivity of density and pressure while preserving cell averages
CNDGMHDPositivityPreservingLimiter	Simple scaling limiter which enforces positivity of density and pressure while preserving cell averages
Cndg_moe_rossmanith	Applies limiters to a dataset
Cndg_moment_slope_limiter_base	The ndg_moment_slope_base class is a base to apply slope-based limiting to dataset
Cndg_tu_alibadi	The ndg_tu_alibdi class applies limiters to a dataset This is my attempt at implementation of DG limiter presented by Tu and Alibadi for Warpxm It is the "2D Limiter" presented in "Nodal Discontinuous Galerki Methods" by by Hesthaven and Warbarton
►Nmoment_taker
CVelocitySpaceMomentTaker	The velocity space moment taker class takes moments in velocity space to calculate variables such as: n(x) = \int f(x,v) dv nv(x) = \int f(x,v)v dv etc
►Nphase_space_gradient
CPhaseSpaceGradient	The velocity space gradient class determines the gradient in velocity space for DG calculation of diffusion terms
►Nunique_variable_adjuster
CBoundaryFluxIntegral	Calculates the line integral of the numerical flux along a boundary and saves it to a unique_distributed_variable
CBoundaryLineIntegral	Calculates a line integral along a boundary and applies it to a unique_distributed_variable which should be of size 1
CUniqueVariableFunctionEvaluator	Evaluates a function and applies it to a unique_distributed_variable which should be of size 1
Cvariable_adjuster_t	The WmVariableAdjuster class is a base class for variable adjusters
Cdg_integrator
Cdg_max_integrator	Useful for computing an L-infinity norm where you're interested in the max value
►Ndiagnostics
CDiagnostic	A simulation diagnostic
CDiagnosticsWriter	Writes a collection of diagnostics to a CSV file
CProbe	This probes a location in the domain and gets the values of the associated variables
CUniqueVariable	This probes a location in the domain and gets the values of the associated variables
CWmIntegrator	Integrates something over the entire domain or a subdomain (DG) Useful base class for sub-classes to call integrate()
►Ndt_calc
Cconvergence_dt	Basic time stepper which tries to grow the time step by a given rate if possible, or uses the sugg_dt if an implicit solve fails
Cfixed_dt
Cintegrating_controller
Cstability_dt	A time step calculator that uses the smallest global physics suggested dt and the result of the previous time step to determine the next time step size
Ctime_stepper_base
►Nfunctions
►Nfive_moment
Cein_ic	Class to set IC for a simple flow problem
Cein_ic_EM	Class to set IC on EM fields in 5-moment problem
Cein_ic_phEM	Class to set IC on EM fields in 5-moment problem
Ceuler1d_arbitrary_shocktube	Arbitrary 1D Shocktube given: [density_left, x_velocity_left, pressure_left], [density_right, x_velocity_right, pressure_right]
Ceuler1d_double_rarefaction	Double Rarefaction 1D Riemann Problem See: Buffard and Clain -> Monoslope and multislope MUSCL methods for unstructured meshes Journal of Computational Physics, 229 (2010) 3745-3376 https://ac.els-cdn.com/S0021999110000495/1-s2.0-S0021999110000495-main.pdf?_tid=e51b7b8a-8b83-4578-a6e6-e338b59cf38a&acdnat=1524338362_0ddf7d2efc1b73e6510cbe8f19b53250
Ceuler1d_shock_entropy
Ceuler2d_forward_facing_step	Class to run initial function of RP1 Problem as defined in "A Simple and Effictive High-Order Shock-Capturing Limiter for Discontinuous Galerkin Methods" by Scott Moe, James Rossmanith, and David Seal, arXiv 1507.03024v1, 2015
Ceuler2d_rp1	Class to run initial function of RP1 Problem as defined in "A Simple and Effictive High-Order Shock-Capturing Limiter for Discontinuous Galerkin Methods" by Scott Moe, James Rossmanith, and David Seal, arXiv 1507.03024v1, 2015
Cflow_init	Class to set IC for a simple flow problem
Cflow_init2	Class to set IC for a simple flow problem
Cflow_init_EM	Class to set IC for electromagnetic fields in a simple flow problem
Cgem
Cgem1D
Cgem2
Charris_current_sheet
CPlasmaSwitch	Initialize the simplified 2D plasma switch problem for a single 5 moment fluid
Crti_instability
►Nhallmhd
Cgem
Cgem1D
►Nimhd
CPlasmaPulse	Initializes a simple plasma pulse
►Nkinetics
Ckinetics1d1v_arbitrary_shocktube	Double Rarefaction 1D Riemann Problem See: Buffard and Clain -> Monoslope and multislope MUSCL methods for unstructured meshes Journal of Computational Physics, 229 (2010) 3745-3376
Ckinetics1d1v_double_rarefaction	Double Rarefaction 1D Riemann Problem See: Buffard and Clain -> Monoslope and multislope MUSCL methods for unstructured meshes Journal of Computational Physics, 229 (2010) 3745-3376
Cmaxwellian	Initailize Maxwellian Distribution
►Nmaxwell
CCustomMaxwell
CField1D1VVlasovCases
Cgem
Cgem1D
Charris_current_sheet
Crti_instability
►Nthirteen_moment
Cbrio_wu
Ccouette_flow	Initialize the simplified 2D plasma switch problem for a single 5 moment fluid
Cgem
Charris_current_sheet
Cplasma_switch	Initialize the simplified 2D plasma switch problem for a single 5 moment fluid
Cplasma_switch_fields	Initialize the EM fields for the simplified 2D plasma switch problem with a normalized Poynting vector [1,0,0]
Ctrapezoid	Initializes a trapezoidal shape
►Nfvm	Base namespace for K-exact higher order finite volume
Cdecay	Adds a linear decay $\partial_{t} q = a q$
►Nhost_actions
Cdata_loader	Suplements WmVariableLoader by allowing you to load "arbitrary" data to variable subdomains
►Nlib	Various utilities and helpful classes used throughout warpxm
CExcept	Wxm::lib::Except is the class to use for creating and throwing exceptions
►Nmesh	Input mesh capabilities
Carb_mesh	Handles reading in input meshes from disk
Cblock_mesh	Generates axis aligned uniform unstructured block meshes including a NumLayers padding of boundary ghost layers
Cmesh	Base class for handling input meshes
►Nmeta
Call	Determines if all predicated values are true or not
Call< false, Vals... >
Call< true, Vals... >
►Nsync
Cpatch_synchronizer_t
Crank_synchronizer_t
►Ntemporal
Cimplicit	Fully implicit temporal solver
CImplicitRKScheme	Handles basic singly implicit RK time integration
►Ntimer
CWmTimer	Parameters for the walltime report
►Nvariable
Cdistributed_variable_t	Defines an interface for variables that exits over distributed memory
Cvariable_t
►Capp_base
CApplication_Variable
Cint_DDn_dv_cylindrical_mhd	Computes the integral of DDn reactivity over domain volume, given MHD variables @params Vars
Cint_Ex2_dv	Computes the integral of component of field energy over domain volume @params Vars
Cint_KEx_dv	Computes the integral of x component of kinetic energy over domain volume @params Vars
Cint_q2_dv	Computes the integral of variable q^2 over domain volume @params Vars
Cint_q_dv	Computes the integral of variable q over domain volume @params Vars
Cint_q_dv_cylindrical	Computes the integral of variable q over domain volume @params Vars
Cintegrate_app	Base class for performing a volume integral
CintegrateVariables
CIntKeComponentdv	Computes the integral of of kinetic energy component over domain volume
Cmax_diff	Computes max(|a-b|)
Cmulti_iterator	A multi-dimensional iterator Stores the index in each dimension, as well as a global flattened index
Cp_norm_diff	Computes |a-b|^p, for finite p
Cp_norm_diff_analytic	Computes |a-b|^p, for finite p @params Vars
Craii_base
Craii_base< T, T, T >
►Ctemporal_solver	Base class for all temporal solvers
Ctemporal_var
Cva_runner	Runs a set of variable adjusters
Cvolume_integrator	Computes the volume (i.e
CBsplineEvaluator2D	The elements needed to evaluate the 2D B-spline
Cconstants_5moment_t	Structure for holding constants used in the 5moment solvers
Cconstants_vlasovmaxwell_t
Cface_t
CsolverVariables_t
CSphericalHemisphereConverter	This class should be used to convert face normal to a direction in the upper half of a hemisphere with origin at the origin of the vector This is used to get the consistent common normal used in the local discontinuous galerkin method
CSphericalPositionVector	This class computes Cartesian and Spherical components of a poition vector in space emanating from origin
CTimestepConstraint	Information that constrain the time step
CTimestepDecision	Encapsulates information necessary to communicate and explain a decision about what timestep should be taken
CTimestepStatus	Manages information about dt tried first, dt actually taken, and dt suggested for the next timestep, along with the explanation (TimestepDecision) for each
CvariableType_t
CVlasovDiffusion
CWmAdvectionFlux
CWmApplication	Base Class for physics applications
CWmApplication_ActionMoment
CWmApplication_AXISYMMETRIC_IMHD_1D
CWmApplication_AXISYMMETRIC_IMHD_2D
CWmApplication_BGKcollisionSource
CWmApplication_FirstMoment
CWmApplication_IMHD_Arbitrarysource
CWmApplication_IMHD_Powellsource
CWmApplication_LangmuirDiffusionCoefficient
CWmApplication_LangmuirEnergySource
CWmApplication_LangmuirWaveKinetic
CWmApplication_LOBC_SOURCE
CWmApplication_SecondMoment	Computes the Reduced Second Moment which becomes the fluid pressure p_{alpha} = n_{alpha} T_{alpha} = Full velocity space integral of A_{alpha}/ v_{dims}
CWmApplication_VlasovMaxwell
CWmApplication_VlasovPonderomotiveForce
CWmApplication_ZerothMoment
CWmArrayBase	Defines common interface for variables that are arrays
CWmBasisArraySet
CWmBurgersFlux
CWmConstOpaquePtr	Opaque Pointer object that carries the referenced data type, but does not expose this payload type as part of the pointer type
CWmDistributedVariable	Defines an interface for variables that exits over distributed memory
CWmDomain
CWmEulerRoeFlux
CWmExecutionStep
CWmExplicitRungeKuttaScheme	The WmExplicitRungeKuttaScheme class
CWmFillValue	Fills all components of a variable with a specified fill value from the input parameters
►CWmFunctionApplicator	Generates initial conditions
►Capplicator_t
►Ccomponents_t
Ccomponent_t
CWmGenerateChargedQuantities
CWmGhostSync	Syncs distributed array overlapping cells bordering node boundaries (ghost cells) for the specified distributed arrays, or specific components of those distributed arrays
CWmHostAction	Base class for sub-solvers in the WARPXM system
CWmHostSequencedGroup	Sequenced group that contains serial set of host steps generally implemented as host (C++) code
CWmICFunction	Base class for functions used in generating initial conditions
CWmICFunction_5Moment_Electron_Zpinch_1D
CWmICFunction_5Moment_Electron_Zpinch_1D_Car
CWmICFunction_5Moment_Electron_Zpinch_2D
CWmICFunction_5Moment_Ion_Zpinch_1D
CWmICFunction_5Moment_Ion_Zpinch_1D_Car
CWmICFunction_5Moment_Ion_Zpinch_2D
CWmICFunction_Bandpass	Base class for functions used in generating initial conditions
CWmICFunction_BrioWu_ShockTube
CWmICFunction_Bump	Base class for functions used in generating initial conditions
CWmICFunction_Couette_Fluid5
CWmICFunction_Cylindrical_Couette_Fluid5
CWmICFunction_DaiWoodward_ShockTube
CWmICFunction_Field_Zpinch_1D
CWmICFunction_Field_Zpinch_1D_Car
CWmICFunction_Field_Zpinch_2D
CWmICFunction_Field_Zpinch_Test_1D
CWmICFunction_Fluid13_Custom
CWmICFunction_Fourier	Base class for functions used in generating initial conditions
CWmICFunction_Gaussian	Base class for functions used in generating initial conditions
CWmICFunction_Hartmann_Field
CWmICFunction_Hartmann_Fluid13
CWmICFunction_Hartmann_MHD
CWmICFunction_Heaviside	Base class for functions used in generating initial conditions
CWmICFunction_IMhd_Zpinch_1D
CWmICFunction_IMhd_Zpinch_2D
CWmICFunction_Langmuir_Dispersion_Field
CWmICFunction_Langmuir_Dispersion_Fluid5
CWmICFunction_Mhd_Custom
CWmICFunction_Orszag_Tang_MHD
CWmICFunction_PHField_Zpinch_1D
CWmICFunction_Polynomial	Base class for functions used in generating initial conditions
CWmICFunction_Pulse_Fluid13
CWmICFunction_Pulse_Fluid5
CWmICFunction_Pulses_Fluid13
CWmICFunction_Pulses_Fluid5
CWmICFunction_Ramp	Base class for functions used in generating initial conditions
CWmICFunction_RandomVelocity_Fluid13
CWmICFunction_SetTo	Base class for functions used in generating initial conditions
CWmICFunction_ShockTube_Fluid13
CWmICFunction_ShockTube_Fluid5
CWmICFunction_Sinc_Field
CWmICFunction_Sinc_Field_2D
CWmICFunction_Sinc_Fluid13
CWmICFunction_Sine_Field
CWmICFunction_Slab_Fluid5
CWmICFunction_TE_TM_Mode	Base class for functions used in generating initial conditions
CWmICFunction_Vlasov_Landau_Damping	Base class for functions used in generating initial conditions
CWmICFunction_Vlasov_Two_Stream	Base class for functions used in generating initial conditions
CWmICFunction_Vlasovmaxwell_Custom	Base class for functions used in generating initial conditions
►CWmICGenerator	Generates initial conditions
CWmICApplicator
CWmIndexer	Template<typename T> class WxArray;
CWmNameTree	Provides hierarchical container for T values according to unique string keys
CWmOpaquePtr	Opaque Pointer object that carries the referenced data type, but does not expose this payload type as part of the pointer type
CWmPatchProcess	Base class for processes that are broken up onto separate sections of the mesh (patches)
CWmPatchProcessor	Used to manage taskes run on patches of a domain
CWmPCMaxwellFlux
CWmPearsonIVClosureSchemeGenerator
CWmPearsonIVHLLFlux
CWmPearsonIVReconditioner
CWmPHMaxwellFluidSource
CWmPHMaxwellFlux
CWmPlasma13MomentCollisionFlux
CWmPlasma13MomentFieldSource
CWmPlasma13MomentInterCollisionalSourceBGK
CWmPlasma13MomentIntraCollisionalSourceBGK
CWmPlasma13MomentRelax
CWmPlasma5MomentBraginskiiFlux
CWmPlasma5MomentBraginskiiSource
CWmPlasma5MomentCollisionSource
CWmPlasma5MomentFieldSource
CWmProbeLocation	Used to probe a position in a dataset and export that data to a hdf5 file over the course of the simulation
CWmQuadratureSystem
CWmReconstructionTest
CWmSequencedGroup	Represents a set of events that must be executed serially in the specified sequence
CWmSimulation	Top level class for WARPXM simulations
CWmSolver	Provides many vital functionality to building and executing a sequence of simulation code
►CWmSolverBase	A base class for solvers in WARPM
CsolverParameters_t
CWmStructuredGeometry	Class used for generating Structured Geometry information for kinetic phase space calculations
CWmStructuredSquare	Class used for generating Structured Geometry information for kinetic phase space calculations specifically of a SQUARE this object is 2D where the "x" direction is x and where the "y" direction is vx
CWmSubSolver	Base class for sub-solvers in WARPXM compute kernel system
CWmSynchronizer	Syncs distributed variables overlapping cell boundaries (ghost cells)
CWmTemporalSolver_RK
CWmTestSuggestedDt	Used with the HOFVM scheme to calculate the absolute minimum of a dataset
CWmTimedSwapVariables	Swaps two like variables, internalized storage remains, while outer shell naming is swapped
CWmTypedArray	Defines common interface for arrays of type T elements
CWmTypeOpaqueArray	Defines common interface for arrays of elements
CWmTypeWrapper
CWmUDGGeometry
CWmUHOFVGeometry
CWmUnstructuredApp
►CWmUnstructuredArray	Class for handling unstructured arrays
CSwapImpl
CsyncRegistry_t
CWmUnstructuredEquationSet
CWmUnstructuredGeometry	Class used for generating mesh geometry concerns
CWmUnstructuredPatch
CWmUnstructuredPatchArray
CWmUnstructuredPatchLink	Used to define the elements to pull from another patch
CWmUnstructuredReconstruction	Class used for generating reconstruction arrays for the high-order finite volume method
CWmUnstructuredSubdomainArray
CWmUnstructuredSubdomainArrayBase
►CWmVariable	Base class for variables that store one or more components of data
CSwapImpl
CWmVariableLoader	Loads all components of a variable from a specified file from the input parameters
►CWmVariableParser
Ccomponent_t
CWmVariableSwapper	Swaps two like variables, internalized storage remains, while outer shell naming is swapped
CWmWriteOut	Writes a dataset to a file each frame
CWxAny	Class WxAny is based on the "any" class described in "Valued Conversion", Kevlin Henney, C++ Report, July-August 2000, pages 37–40
CWxBox	WxBox represents a n-dimensional box of elements specified by lower coordinates and upper coordinates
CWxCreator	This creator is meant to be used for classes with default constructor
CWxCreatorBase
CWxCreatorForChildren	This creator is meant to be used for classes that require a parent argument to their constructor
CWxCreatorForChildrenBase
CWxCreatorMap
CWxCreatorMapBase	Defines Common Interface for WxCreatorMap
CWxCrypt	WxCrypt provides a container to store/retrive name-value pairs
CWxCryptSet	WxCryptSet extends WxCrypt by providing, in addition to name-value pairs, an set of named WxCryptSets, thus providing a powerful way of representing hierarchical data
CWxCryptSetLexer	Class that provides utility to read an input stream into a WxCryptSet
CWxFileHandler	Class to log messages to a file
CWxHdf5Io	WxHdf5Io is the interface for the HDF5 implementation of HDF5
CWxHdf5IoTmpl	WxHdf5IoTmpl does the reading and writing to HDF5 files for a given data type
CWxHdf5NodeTypev	HDF5 specific i/o node wrapper
CWxHdf5Traits	Traits class for HDF5
►CWxIoBase	Provides an abstract interface for access to hierachical datasets
CAtttributeNotFoundException	Exception class for reporting when an attribute does not exist
CWxIoNodeTypev	Provides a means for derived messengers to return implimentation specific message status flags and data
CWxIoTmpl	WxIoTmpl is the base class for access to a hierarchical file system with groups, data sets, and attributes for those datasets
CWxLogger
CWxLoggerBase	Establishes basic interface of loggers
CWxLogRecordHandler	Class to handle log messages generated by WarpX logging system
CWxLogStream	Provides interface to streaming iostreams to logs
CWxLogStreamStrm	Works with WxLogStream for providing streaming to logs
CWxMpiMsg	MPI Messenger
CWxMpiMsgStatus_v	Mpi specific message status wrapper
CWxMpiMsgTmpl
CWxMpiTraits	Type traits for use in MPI messengers
CWxMpiTraits< bool >
CWxMpiTraits< char >
CWxMpiTraits< double >
CWxMpiTraits< float >
CWxMpiTraits< int >
CWxMpiTraits< long >
CWxMpiTraits< long double >
CWxMpiTraits< long long int >
CWxMpiTraits< short >
CWxMpiTraits< unsigned >
CWxMpiTraits< unsigned char >
CWxMpiTraits< unsigned long >
CWxMpiTraits< unsigned short >
►CWxMsgBase	Provides an abstract interface for message based communication between different processes
CWxMsgContainer
CWxMsgStatus_v	Provides a means for derived messengers to return implimentation specific message status flags and data
CWxMsgTmpl	Provides interface for messaging between processes
CWxObject	WxObject is a base class for WarpX classes which need to go through a creation/destruction cycle within the simulation
CWxRange	WxRange represents a hyper-rectangular domain of an n-dimensional space of integers
CWxSplitRange	WxSplitRange splits a range into smaller ranges in a cartesian manner
CWxStepper	Base class for objects which can be advanced in time
CWxStepperStatus	Represents important parameters for the efficacy of a completing simulation step
CWxStreamHandler	Class to log messages to an open stream
CWxTimer	Timer class which keeps accurate wall time
CWxTypeList	WxTypeList class provides a means of defining a list of types (hence the name "typelist")
►CWxTypeMap	WxTypeMap can be used to generate a whole class hierachy at compile time
CRebind
►CWxTypeMap< WxNullType, Unit >	Specialization 3: For WxNullType do nothing
CRebind
►CWxTypeMap< WxTypeList< T1, T2 >, Unit >	Specialization 1: Inherit from WxTypeMap generated from the elements of the typelist
CRebind