SNP Workshop

The Leaché Lab hosted a workshop focused on collecting and analyzing SNP data using the  ddRADseq method. Participants included students, postdocs, and faculty from the UW, USGS San Diego, San Diego State University, and Mexico (Universidad Nacional Autonoma de Mexico). The first four days of the workshop were spent constructing genomic DNA libraries in the molecular lab for all sorts of organisms, including lizards, frogs, snakes, scorpions, birds, agave plants, and hazelnuts.  We spent the fifth and final day of the workshop bringing everyone up to speed on the bioinformatics and data analysis skills that they’ll need to handle the DNA sequences once they’re ready. It was an exciting week that produced a ton of new data. We hope to conduct another SNP workshop in the future. Please let us know if you’re interested in attending.

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Everyone was in a great mood after seeing computer output (TapeStation) showing that their SNP libraries were successful.

RADseq_Workshop

Front row, left to right: Andreas Chavez, Itzue Caviedes-Solis, Rob Bryson, Rubi Meza, Dustin Wood, Jared Grummer.
Back row, left to right: Andy Gottscho, Jon Richmond, Matt McElroy, Kevin Epperly, Adam Leaché, Leonard Jones.
Not shown: Alejandro Zadívar Riverón and Audrey Ragsac.

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Honest Abe Linkem a.k.a Alexander

Alexander Linkem learning family trade at 6 days old.

Alexander Linkem learning family trade at 6 days old.

Congrats to Charles and Gabrielle on the arrival of Alexander “Honest Abe” Linkem. Alexander is the first official lab baby. Not that he was conceived in the lab (to our knowledge). More babies are on the way! Check back in January for details.

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New Species Tree Sampling Design Study

Rebecca Harris has a new paper in the journal Evolution on the influence of sampling design on species tree inference. The paper also has a new phylogeny for New World Chickadees.

Link to article.

Screen Shot 2013-11-02 at 4.14.27 PM

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Road Cruising Washington: Africa Edition

Savannah monitor from Bellingham.

Savannah monitor from Bellingham. Courtesy Jess Hackler.

Road cruising for reptiles in Washington just got a lot more interesting. This savannah monitor lizard (Varanus exanthematicus) was found over the weekend in Bellingham merging onto Interstate 5 at the Lakeway Exit 253 on-ramp. The species is typically found in arid regions of Africa, not the Pacific Northwest. The lizard probably rafted across the Atlantic Ocean on a log, and then trekked across North America before giving up on circumnavigating the globe when it encountered the Pacific Ocean. The species is also popular in the pet trade.

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Rocket Frog

This photo was taken by NASA during a launch on September 6, 2013 from the Wallops/Mid-Atlantic Regional Spaceport.

Apparently, the launchpad has a pool for the high-volume water deluge system that activates during launches to protect the pad from damage and for noise suppression. This might be a nice spot for a frog to hang out, or this is a terrestrial toad that was just caught in the wrong place at the wrong time. Full story.

Rocket frog launch at Wallops Island Flight Facility in Virginia on September 6, 2013. Credit NASA/Wallops/Mid-Atlantic Regional Spaceport.

Rocket frog launch at Wallops Island Flight Facility in Virginia on September 6, 2013. Credit NASA/Wallops/Mid-Atlantic Regional Spaceport.

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