Best ASIH Symposium that Never Was.

Are you going to the 2015 American Society of Ichthyologists and Herpetologists (ASIH) meetings in Reno, Nevada?
If not, then you won’t miss this symposium:
The Next-Generation: Genomic Studies of Herps and Fishes”

The ASIH Symposium Committee rejected our proposal.  The committee informed us that the field is too exploratory. They suggested that we try again after waiting two or three years to let the field develop. They also pointed out that they already have some genomics talks scheduled for 2014. They did offer us the chance to self-organize our talks into a contributed paper session, which could lead to a series of papers in Copeia.

Here’s a sneak peek at the best ASIH symposium that never was!

We proposed a joint symposium of ichthyologists and herpetologists to address the major advances in systematics and evolution that are a result of the NGS revolution. We thought that this symposium was well timed for the broader ichthyology and herpetology communities. The symposium participants would have included experts that spanned phylogenetic and population level analyses of fishes and herps, and different types of NGS methods, including RADseq, sequence capture, whole genome sequencing, and transcriptomics.

List of speakers and topics:
Mike Alfaro – (UCLA) percomorph genomics
Todd Castoe – (UT Arlington) snake genomics
Prosanta Chakrabarty – (LSU) genomics at the family level of fishes
Brant Faircloth – (UCLA) vertebrate genomics
Matt Fujita – (UT Arlington) lizard genomics
Paul Hime – (U Kentucky) amphibian genomics
Adam Leaché – (UW) population genomics
Emily Lemmon – (FSU) frog genomics
Rachel Mueller – (CSU) salamander genomics
Gavin Naylor – (College of Charleston) shark genomics
Tom Near– (Yale) percomorph genomics
Brad Schaeffer (UCLA) – amphibian and turtle genomics
Laurie Sorenson – (LSU) squalomorph genomics
Erica Rosenblum – (UC Berkeley) genomics of adaptation
Sara Ruane – (AMNH) Madagascar snake phylogenomics
David Weisrock – (U Kentucky) salamander genomics


Posted in Burke, Lab | Comments Off

Molecular Evolution: A Statistical Approach

Ziheng Yang's new book with Charles Linkem's cover photo.

Ziheng Yang’s new book with Charles Linkem’s cover photo.

Ziheng Yang’s new book, “Molecular Evolution: A Statistical Approach” is on sale at Amazon. The cover photo, a western fence lizard (Sceloporus occidentalis), was taken by Charles Linkem during our collecting trip to Oregon last summer. Some people think that the lizard is beautiful, while others (Ziheng included) think that it looks terrifying. The book covers the statistical and computational foundations of molecular evolution, phylogenetics and phylogeography. It provides explanations and examples using real data analysis. The data and computer programs are available on the web, and course materials are provided at the end of each chapter. This will make it easy to use the book for teaching, perhaps in a graduate seminar course.

Posted in Lab | Comments Off

Bayesian Phylogenetics Workshop

A new workshop on Bayesian phylogenetic analysis using the program RevBayes is happening August 25-31, 2014 at the National Evolutionary Synthesis Center (NESCent) in Durham, NC.  The course will cover a lot of useful material, including probability theory, divergence dating, species trees, biogeography, phylodynamics, comparative methods, and fully integrative Bayesian inference of phylogenetic parameters.  The course instructors are awesome too:
Bastien Boussau, LBBE, Lyon, France
Tracy Heath, UC Berkeley & U Kansas
Sebastian Höhna, UC Davis & UC Berkeley
John Huelsenbeck, UC Berkeley
Michael Landis, UC Berkeley
Nicolas Lartillot, LBBE, Lyon, France
Brian Moore, UC Davis
Fredrik Ronquist, NRM Stockholm
Tanja Stadler, ETH Zürich

They expect a lot of competition for space, so get your application in early.

Also, dress will be very casual, with a good chance of thunderstorms.

Posted in Lab | Comments Off

New Postdoc. Andreas Chavez Joins the Lab!

A new postdoctoral researcher recently joined the lab. Dr. Andreas Chavez is a recent graduate from UW Biology. He is a mammalogist who specializes in phylogenetics, phylogeography, and hybrid zones. Andreas will only be with us until Summer, and then he’s moving to UC Berkeley to start work on a new postdoctoral research position at the Museum of Vertebrate Zoology. While he’s still here, Andreas is going to learn how to work with next-generation sequence data, including library preparation for RADseq and sequence capture approaches, data management, bioinformatics, and also phylogenetic analysis. Welcome to the lab!

Dr. Andreas Chavez

Dr. Andreas Chavez

Posted in Lab | Comments Off

Anaconda Boxcavation

Last week at the annual Burke Museum Behind the Scenes Night we excavated the skeleton of a yellow anaconda. We acquired the anaconda from the Woodland Park Zoo, and we skinned the snake at the 2013 Behind the Scenes Night.

Anaconda boxcavation. Photo by Mike Etnier.

Anaconda boxcavation. Photo by Mike Etnier.

Mike Etnier from Boxcavations helped with the logistics, which involved burying the snake in a box of sand and storing it for the last year. You can watch the entire excavation process on youtube

Posted in Burke | Comments Off