Bakker, J.D. 2009. Increasing the utility of Indicator Species Analysis. Journal of Applied Ecology. In press.

Sanchez Meador, A.J., M.M. Moore, J.D. Bakker, and P.F. Parysow. 2009. 108 years of change in spatial pattern following selective harvest of a ponderosa pine stand in northern Arizona, USA. Journal of Vegetation Science. In press.

Laughlin, D.C., J.D. Bakker, M.L. Daniels, M.M. Moore, C.A. Casey, and J.D. Springer. 2008. Restoring plant species diversity and community composition in a ponderosa pine-bunchgrass ecosystem. Plant Ecology 197:139-151.

MacDougall, A.S., S.D. Wilson, and J.D. Bakker. 2008. Climate variability alters long-term community assembly. Journal of Ecology 96:346-354.

Bakker, J.D., and M.M. Moore. 2007. Controls on vegetation structure in southwestern ponderosa pine forests, 1941 and 2004. Ecology 88:2305-2319.

Laughlin, D.C., M.M. Moore, J.D. Bakker, C.A. Casey, J.D. Springer, P.Z. Fule, and W.W. Covington. 2006. Assessing targets for the restoration of herbaceous vegetation in ponderosa pine forests. Restoration Ecology 14:548-560.

Moore, M.M., C.A. Casey, J.D. Bakker, J.D. Springer, P.Z. Fule, W.W. Covington, and D.C. Laughlin. 2006. Herbaceous vegetation responses (1992-2004) to restoration treatments in a ponderosa pine forest. Rangeland Ecology and Management 59:135-144.

Bakker, J.D. 2005. A new, proportional method for reconstructing historical tree diameters. Canadian Journal of Forest Research 35:2515-2520.

Laughlin, D.C., J.D. Bakker, and P.Z. Fule. 2005. Understorey plant community structure in lower montane and subalpine forests, Grand Canyon National Park, USA. Journal of Biogeography 32:2083-2102.

Kooistra, C.M., and J.D. Bakker. 2005. Frozen-stored conifer container stock can be outplanted without thawing. Native Plants Journal 6:267-278.

Bakker, J.D., and S.D. Wilson. 2004. Using ecological restoration to constrain biological invasion. Journal of Applied Ecology 41:1058-1064. Profiled in Botanical Electronic News, issue 340.

Laughlin, D.C., J.D. Bakker, M.T. Stoddard, M.L. Daniels, J.D. Springer, C.N. Gildar, A.M. Green, and W.W. Covington. 2004. Toward reference conditions: effects of wildfire on flora of a remote old-growth ponderosa pine forest. Forest Ecology and Management 199:137-152.

Wilson, S.D., J.D. Bakker, J.M. Christian, X. Li, L.G. Ambrose, and J. Waddington. 2004. Semiarid old-field restoration: is neighbor control needed? Ecological Applications 14:476-484.

Bakker, J.D., S.D. Wilson, J. Christian, X. Li, L. Ambrose, and J. Waddington. 2003. Contingency of prairie restoration success on year, site and competition from introduced grasses. Ecological Applications 13:137-153.

Kooistra, C.M., and J.D. Bakker. 2002. Planting frozen conifer seedlings: warming trends and effects on seedling performance. New Forests 23:225-237.

Bakker, J., and S. Wilson. 2001. Competitive abilities of introduced and native grasses. Plant Ecology 157:117-125.

Bakker, J.D., J. Christian, S.D. Wilson, and J. Waddington. 1997. Seeding blue grama in old crested wheatgrass fields in southwestern Saskatchewan. Journal of Range Management 50:156-159.