| Version | Release date | Description | Contact | Size |
|
MORGAN 3.4 Tutorial | September 2019 (Labor Day) |
MORGAN-3.4 tutorial; online version and
PDF and single-file html and plain text With new morgan34_examples.tar.gz Examples file |
Elizabeth Thompson | 722kb 747kb and 508kb 2.7 Mb |
| MORGAN 3.4 | December 2017 (Winter Solstice) |
C-code source and plain text documentation. Full package, with new dense-marker versions of ibddrop and markerdrop, and new version of ibd_haplo (ibd_trios) and other improvements. |
Steven Lewis and Elizabeth Thompson | 7091kb |
|
MORGAN 3.3.2 Tutorial | January 2017 (New Year) |
MORGAN-3.3.2 tutorial; online version and
PDF and single-file html and plain text With morgan33_examples.tar.gz Examples file |
Elizabeth Thompson | 700kb 649kb and 484kb 2.7 Mb |
| MORGAN 3.3.2 | July 2016 (Bastille Day) |
C-code source and plain text documentation. Full package, with new program base_trait_lods, and other improvements. |
Steven Lewis and Elizabeth Thompson | 6843kb |
| MORGAN 3.3.1 | February 2016 (Leap Day) |
C-code source and plain text documentation. Full package, with updated 6 subprograms of ibd_create, and other improvements. |
Steven Lewis and Elizabeth Thompson | 6803kb |
|
MORGAN 3.3 Tutorial and Examples | May 2015 (Memorial Day) |
MORGAN-3 tutorial; online version and PDF and gzipped html Examples in gzipped tar file Updated with IBD_Haplo Programs and Examples. |
Elizabeth Thompson | 674kb 623kb 2760kb |
| MORGAN 3.3 | May 2015 (Memorial Day) |
C-code source and plain text documentation. Full package, with 5 new subprograms of ibd_create. |
Steven Lewis and Elizabeth Thompson | 7383kb |
|
MORGAN 3.2 Online Tutorial | January 2014 (New Year's Day) |
MORGAN-3 tutorial; online version Updated for MORGAN 3.2 (but no new Examples files as yet). |
Elizabeth Thompson | |
| MORGAN 3.2 | December 2013 (Hanukkah) |
C-code source and plain text documentation. Full package, with updated ibd_haplo and gl_lods. |
Steven Lewis and Elizabeth Thompson | 2808kb |
|
MORGAN 3.1.1 Online Tutorial | July 2013 (July 4 holiday) |
MORGAN-3 tutorial; online version Minor updates to online release only. |
Elizabeth Thompson | |
|
MORGAN 3.1.1 Tutorial and Examples | December 2012 (Christmas) |
MORGAN-3 tutorial; online version and PDF and gzipped paginated html Examples in gzipped tar file Updated with new IBD_Haplo Chapter and Examples. |
Elizabeth Thompson | 747kb 126kb 144kb |
| MORGAN 3.1.1 | November 2012 (Veterans Day) |
C-code source and plain text documentation. Full package, with fully updated IBD_Haplo. |
Steven Lewis and Elizabeth Thompson | 2804kb |
| MORGAN 3.1 | April 2012 (Easter) |
C-code source and plain text documentation. Full package, with fully integrated IBD_Haplo. |
Steven Lewis and Elizabeth Thompson | 2406kb |
|
lnkg2lmlnk script and examples | March 2012 (Spring break) |
Improved updated version of Rothstein
lnkg2lmm script to transform from LINKAGE to MORGAN: updated for MORGAN 3.0.3 lm_linkage program. Also includes example in gzipped tar. | Ellen Wijsman and Hiep Nguyen | 23kb 1.5kb |
|
lnkg3lmm script and examples | December 2011 (Christmas) |
Updated version of Rothstein
lnkg2lmm script to transform from LINKAGE to MORGAN: updated for MORGAN 3.0.3 lm_linkage program. Also includes example in gzipped tar. | Elizabeth Thompson | 94kb 29kb |
|
MORGAN 3.0.3 Tutorial and Examples | December 2011 (Christmas) |
MORGAN-3 tutorial; online version and PDF and gzipped paginated html Examples in gzipped tar file Minor corrections to tutorial and examples files. |
Elizabeth Thompson | 723kb 232kb 104kb |
| MORGAN 3.0.3 | October 2011 (Halloween) |
C-code source and plain text documentation. Full package, (including IBD_Haplo). |
Steven Lewis and Elizabeth Thompson | 2654kb |
|
MORGAN 3.0.3 Tutorial and Examples | October 2011 (Halloween) |
MORGAN-3 tutorial; online version and PDF and gzipped paginated html Examples in gzipped tar file |
Elizabeth Thompson and Adam Gustafson | 723kb 222kb 207kb |
| MORGAN 3.0.2 | April 2011 (May Day) |
C-code source and plain text documentation. Full package, (excluding Schnell and IBD_Haplo). |
Steven Lewis and Elizabeth Thompson | 1533kb |
| MORGAN 3.0.1 | September 2010 (Labor Day) |
C-code source and plain text documentation. Full package, including IBD_Haplo 2.0 directory. |
Steven Lewis and Elizabeth Thompson | 2108kb |
| MORGAN 3.0 | November 2009 (Veterans' Day) |
C-code source and plain text documentation: full package. |
Steven Lewis and Elizabeth Thompson | 1465kb |
| MORGAN 3.0 (beta2) | March 2009 (Equinox) | C-code source and plain text documentation: full package. |
Elizabeth Thompson | 1394kb |
| MORGAN 3.0 (beta) | March 2008 (Easter) | C-code source and plain text documentation: partial package only |
Elizabeth Thompson | 664kb |
| Version | Release date | Description | Contact | Size |
| SMARTree | May 2014 | Mathematica code for the analyses of
Zheng et al (2014, Journal of Molecular Evolution). Includes documentation file. |
Chaozhi Zheng | 8148kb |
| JointIBD | February 2014 (Presidents' Day) |
Mathematica code for the analyses of
Zheng et al (2014, Journal of Computational Biology). Includes documentation file. |
Chaozhi Zheng | 4931kb |
| IBD_Create V2.0 | December 2013 (Hanukkah) |
Programs to create IBD patterns at varying LD includes simpop_fgl, beaglesim, fgl2haplo, fgl2ibd Includes examples and documentation files. |
Fiona Grimson and Elizabeth Thompson | 9619kb |
| IBDhaploRtools 1.5 | March 2013 (Easter) |
An R-package of tools to analyze ibd_haplo output, includes example data files and PDF tutorial. Released to CRAN |
Fiona Grimson | 248kb |
| SAGMB_files | January 2012 (MLK Day) |
The files and instructions to recreate the IBDmerge analyses of Glazner and Thompson (2012). Gzipped tar file. |
Chris Glazner and Elizabeth Thompson | 2803kb |
| IBDhaploRtools 1.2 | November 2011 (UW 150th birthday) |
An R-package of tools to analyze ibd_haplo output, includes example data files and PDF tutorial. Gzipped tar file. |
Marshall Brown and Elizabeth Thompson | 209kb |
| IBD_Create | October 2011 (Halloween) |
Programs to create IBD patterns at varying LD includes simu, beaglesim, ibd_states Includes examples and documentation files. |
Elizabeth Thompson and Chris Glazner | 7874kb |
| IBD_Haplo 2.1 | October 2011 (Halloween) |
An add-on for MORGAN-3; C-code source, and gold examples: INCLUDED IN MORGAN 3.0.3 above |
Elizabeth Thompson | N/A |
| IBDhaploRtools 1.1 | May 2011 (Memorial Day) |
An R-package of tools to analyze ibd_haplo output, includes example data files and PDF tutorial. Gzipped tar file. |
Marshall Brown and Elizabeth Thompson | 229kb |
| IBDhaploRtools 1.0 | March 2011 (St Patricks Day) |
An R-package of tools to analyze ibd_haplo output, includes example data files and PDF tutorial. Gzipped tar file. |
Marshall Brown and Elizabeth Thompson | 411kb |
| IBD_Haplo 2.0 | August 2010 (Labor Day) |
An add-on for MORGAN-3; C-code source, examples and plain text documentation. Added simuation program and python script. |
Chris Glazner and Elizabeth Thompson | 514kb |
| IBDgraph 2.0 | August 13, 2010: Updated Aug 30, 2010 |
Another add-on for MORGAN-3; C-code source for library, now choice of python calling script or C program, examples and plain text documentation |
Lucas Koepke and Elizabeth Thompson | 94kb 149kb |
| IBDgraph | March 2010 Updated April 2010 |
Another add-on for MORGAN-3; C-code source for library, python calling script, examples and plain text documentation |
Hoyt A. Koepke and Elizabeth Thompson | 82kb 112 kb |
| IBD_Haplo | December 2009 (Christmas) |
An add-on for MORGAN-3; C-code source, examples and plain text documentation |
Elizabeth Thompson | 359kb |
| Version | Release date | Description | Contact | Size |
| MORGAN 2.9 Tutorial | September 2010 (Labor Day) | Full release of Tutorial for 2.9 : full tar and paginated html only (both gzipped) |
Marshall Brown and Elizabeth Thompson | 993 kb 222kb |
| MORGAN 2.9 Examples | September 2010 (Labor Day) | Updated tutorial examples file (gzipped) for use with MORGAN 2.9 | Elizabeth Thompson | 75kb |
| MORGAN 2.9 Tutorial | December 2009 (Christmas) | Online release only: full download release after testing | Elizabeth Thompson | |
| MORGAN 2.9 Examples | December 2009 (Christmas) | Updated tutorial examples file for use with MORGAN 2.9 | Elizabeth Thompson | 97kb |
| MORGAN 2.9 | November 2008 (Thanksgiving) | C-code source and plain text documentation: Bug affecting lm_multiple is fixed. |
Elizabeth Thompson and Steven Lewis | 1393kb |
| MORGAN 2.9 executables | September 2008 | Win32 (tested WinXP) executables. Mac OSX (tested 10.5 Leopard) Universal Binary |
Michael Na Li Univ. Minnesota | 6527kb 7343kb |
| MORGAN 2.9 | August 2008 (Labor Day) | C-code source and plain text documentation | Elizabeth Thompson and Steven Lewis | 1393kb |
| MORGAN 2.8.3 tutorial examples | April 2008 | Updated tutorial examples file for use with MORGAN 2.8.3 | Elizabeth Thompson | 116kb |
| MORGAN 2.8.3 | March 2008 (Easter) | C-code source and plain text documentation | Elizabeth Thompson | 1427kb |
| MORGAN-tutorial for 2.8.1 | August 2007 | Updated to 2.8.1, and with new examples |
Audrey Fu | |
| MORGAN 2.8.2 | April 2007 (Easter) | C-code source and plain text documentation | Elizabeth Thompson | 1184kb |
| MORGAN 2.8.1 | April 2006 (Easter) | C-code source and plain text documentation | Myrna Jewett | 1246kb |
| MORGAN 2.7/2.8- Examples | April 2006 (Easter) | Examples checked and updated to current tutorial release. | Elizabeth Thompson | 150kb |
| MORGAN-tutorial 2.7/2.8 | Feb 2006 (Presidents' Day) | Updated to 2.8: but with no lm_map or lm_ibdtests examples |
Adele Mitchell | |
| MORGAN 2.8 | December 2005 (Christmas) | C-code source and plain text documentation | Myrna Jewett | 1212kb |
| MORGAN 2.7 | August 2005 (before Labor Day) | C-code source and plain text documentation | Myrna Jewett | 1176kb |
| MORGAN 2.6.01 | June 2004 (Summer Solstice) | C-code source and plain text documentation | Myrna Jewett | 616kb |
| MORGAN-tutorial 2.6 | June 2004 (Summer Solstice) | Updated to 2.6.01: with new examples | Myrna Jewett | |
| MORGAN 2.6 | February 2004 (Leap Day) | Unix/linux source and documentation | Myrna Jewett | 614 kb |
| MORGAN-tutorial 2.5 | March 2003 | test version only | Michael Li | 548 kb |
| MORGAN 2.5 | November 2002 (Veterans' Day) | Unix/linux source and documentation | Myrna Jewett | 985 kb |
| MORGAN 2.5 | Executables for windows (win32) | Michael Li | 1.34 Mb | |
| MORGAN 2.4.1 | June 2002 (Queen's Golden Jubilee) | Unix/linux source and documentation | Myrna Jewett | 892 kb |
| MORGAN 2.4 | February 2002 (Presidents' Day) | Myrna Jewett | 789 kb | |
| MORGAN 2.3.2 | November 2001 (Veterans' Day) | Bug fix files for 2.3.2 added | Myrna Jewett | 779 kb |
| MORGAN 2.3.2 | September 2001 | Myrna Jewett | ||
| MORGAN 2.3.1 | May 2001 (Memorial Day) | Bug fixed | Myrna Jewett | 734 kb |
| MORGAN 2.3.1 | April 2001 (Easter) | Myrna Jewett | ||
| MORGAN 2.3 | December 2000 (Christmas) | Myrna Jewett | 704 kb | |
| MORGAN 2.2 | April 2000 (Good Friday) | Myrna Jewett | 226 kb | |
| MORGAN 2.1 | May 1999 (Memorial Day) | Myrna Jewett | 206 kb | |
| MORGAN 2.0.1 | Feb 1998 (Presidents' Day) | Myrna Jewett | 518 kb | |
| MORGAN 2.0 | Nov 1997 (Thanksgiving) | Myrna Jewett |
| ALBERT | May 2006 | Adele Mitchell |
| Eclipse 1.1 | December 2003 (Christmas) | Solveig Sieberts |
| Eclipse 1.0 | Sept 2003 (Labor Day) | Solveig Sieberts |
| Eclipse 0.3 | November 2001 (Veterans' Day) | Solveig Sieberts |
| Eclipse 0.2 | Sept 2001 (Labor Day) | Solveig Sieberts |
| Eclipse 0.1 | Christmas 2000 | Solveig Sieberts |
| MCLEEPS V1.1 | Sept 2001 (Labor Day) | Eric Anderson |
| MCLEEPS V1.0.1 | December 2000 (St. Nicolas) | Eric Anderson, Ellen Williamson |
| MCLEEPS V1.0 | Sept 2000 (Labor Day) | Eric Anderson, Ellen Williamson |
| Version | Release date | Contact |
| Loki 2.4.5 | March, 2003 | Simon Heath |
| Loki 2.4 | August, 2002 | Simon Heath |
| Loki 2.3 | November 11, 2000 (Veterans' Day) | Simon Heath |
| Loki 2.1.4r2 | July 4, 1998 | Simon Heath |
| Loki 2.1.4 | March 17, 1998 (St Patrick's Day) | Simon Heath |
| Loki 2.1.3 | March 1, 1998 (St David's Day) | Simon Heath |
| Loki 2.1.2 | Dec 1997 (Christmas) | Simon Heath |
| Version | Release date | Comment | Contact | Size |
| Pedfiddler v0.6 | April 2010 | Zip file of Windows executable and pdf instructions |
J.C.Loredo-Osti | 884 kb 60 kb |
| Pedfiddler v0.6 | September 2008 | Linux source: tar, gzipped | J.C.Loredo-Osti | 765 kb |
|
Pedfiddler v0.5 Mac Binaries | September 2008 | Mac OSX Binaries (OK for Intel and PPC G4/G5). Tested only under Mac OS 10.5 Leopard. | Michael Na Li | 1052 kb |
| Pedfiddler v0.5 | August 2005 | Unix/linux: source /executables. (gzipped tar) Windows 2000 versions: executables. (zip file) |
J.C.Loredo-Osti | various. 264 kb |
| Pedfiddler v0.4 | March 2003 | Unix/linux and Windows 2000 versions | J.C.Loredo-Osti | |
| Pedfiddler v0.31 | November 2002 (Election Day: USA) | Various fixes. Also Windows version. | J.C.Loredo-Osti, Michael Li | |
| Pedfiddler v0.3 | November 2001 (Thanksgiving) | bug-fixed file; binaries removed | J.C.Loredo-Osti, Ken Morgan | |
| Pedfiddler v0.3 | November 2001 (Veterans' Day) | Source and true-64 binaries | J.C.Loredo-Osti, Ken Morgan | |
| Pedfiddler v0.2 | Christmas 2000 | - | J.C.Loredo-Osti, Ken Morgan |
MORGAN Version 1
(Note MORGAN 1.x is now superceded by MORGAN versions 2.3 and subsequent)
| Version | Release date | Contact |
| MORGAN 1.1.2 | July 4, 1999 | Elizabeth Thompson |
| MORGAN 1.1.1 | July 4, 1997 | Elizabeth Thompson |
| MORGAN 1.1 | May 1997 (Memorial Day) | Elizabeth Thompson |
| Gibbs 1.0 | July 4, 1996 | Elizabeth Thompson |
InSegT
| Version | Release date | Contact |
| InSegT_V1.1 | Sept 1999 (Labor Day) | Jochen Kumm |
| InSegT | Jan 1999 (New Year's Day) | Jochen Kumm |
| Version | Release date | Contact |
| Pedpack | Elizabeth Thompson, Alun Thomas | |
| Borel | Elizabeth Thompson, Ian Painter | |
| Hardy | Elizabeth Thompson. Sun Wei Guo |
| UW - Statistics: Sunday, 08-Sep-19 | Contact: Elizabeth Thompson <eathomp@u.washington.edu> |