#NEXUS 

Begin data;
	Dimensions ntax=4 nchar=1273;
	Format datatype=nucleotide gap=- missing=? matchchar=. interleave;
	Matrix
 Aquifex       CTCAGCGCGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGTGCGCAGA
 Deinococcus   CTCAGGGTGAACGCTGGCGGCGTGCTTAAGACATGCAAGTCGAACGCGGA
 Bacillus      CTCAGGACGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGGACA
 Thermus       CTCAGGGTGAACGCTGGCGGCGTGCCTAAGACATGCAAGTCGTGCGGGCA

 Aquifex       GCGGCAAACGGGTGAGTAACACGTGGGTAACCTACCCCCAGGAGGGGGAT
 Deinococcus   GTGGCGCACGGGTGAGTAACACGTAACTGACCTACCCAGAAGTCATGAAT
 Bacillus      GCGGCGGACGGGTGAGTAACACGTGGGTAACCTGCCTGTAAGACTGGGAT
 Thermus       GCGGCGGACGGGTGAGTAACGCGTGGGTGACCTACCCGGAAGAGGGGGAC

 Aquifex       AACCCCGGGAAACCGGGGCTAATACCCCATAAAGCCGATGGGCCCGCGGC
 Deinococcus   AACTGGCCGAAAGGTCAGCTAATACGTGATGTGGTGGATGGGGTTGCGTT
 Bacillus      AACTCCGGGAAACCGGGGCTAATACCGGATGGTTGTGATGGACCCGCGGC
 Thermus       AACCCGGGGAAACTCGGGCTAATCCCCCATGTGGACGATGGGCCCGCGTC

 Aquifex       CCATCAGGTAGTTGGTGGGGTAACGGCCCACCAAGCCTATGACGGGTAGC
 Deinococcus   CCATCAGCTGGTTGGTGGGGTAAAGGCCTACCAAGGCGACGACGGATAGC
 Bacillus      GCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAACGATGCGTAGC
 Thermus       CCATCAGCTAGTTGGTGGGGTAATGGCCCACCAAGGCGACGACGGGTAGC

 Aquifex       CGGCCTGAGAGGGTGGCCGGCCACAGCGGGACTGAGACACGGCCCGCACC
 Deinococcus   CGGCCTGAGAGGGTGGCCGGCCACAGGGGCACTGAGACACGGGTCCCACT
 Bacillus      CGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACT
 Thermus       CGGTCTGAGAGGATGGCCGGCCACAGGGGCACTGAGACACGGGCCCCACT

 Aquifex       CCTACGGGGGGCAGCAGTGGGGAATCGTGGGCAATGGGCGAAAGCCTGAC
 Deinococcus   CCTACGGGAGGCAGCAGTTAGGAATCTTCCACAATGGGCGCAAGCCTGAT
 Bacillus      CCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGAC
 Thermus       CCTACGGGAGGCAGCAGTTAGGAATCTTCCGCAATGGGCGCAAGCCTGAC

 Aquifex       CCCGCGACGCCGCGTGGGGGAAGAAGCCCTGCGGGGTGTAAACCCCTGTC
 Deinococcus   GGAGCGACGCCGCGTGAGGGATGAAGGTTTTCGGATCGTAAACCTCTGAA
 Bacillus      GGAGCAACGCCGCGTGAGTGATGAAGGTTTTCGGATCGTAAAGCTCTGTT
 Thermus       GGAGCGACGCCGCTTGGAGGAAGAAGCCCTTCGGGGTGTAAACTCCTGAA

 Aquifex       GGGGGGGACGTGACGGTACCCCCAGAGGGGACGGCTAACTACGTGCCAGC
 Deinococcus   TCTGGG-ACGTGACGGTACCAGAGTAAGCACCGGCTAACTCCGTGCCAGC
 Bacillus      GTTAGGGAAGTGACGGTACCTAACCAGGCCACGGCTAACTACGTGCCAGC
 Thermus       CCCGGG-ACGTGACGGTACCGGGGTAAGCGCCGGCCAACTCCGTGCCAGC

 Aquifex       AGCCGCGGTAATACGTAGGTCCCGAGCGTTGCGCGAAGTCACTGGGCGTA
 Deinococcus   AGCCGCGGTAATACGGAGGGTGCAAGCGTTACCCGGAATCACTGGGCGTA
 Bacillus      AGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTA
 Thermus       AGCCGCGGTAATACGGAGGGCGCGAGCGTTACCCGGATTCACTGGGCGTA

 Aquifex       AAGCGTCCGCAGCCGGTCGGGTAAGCGGGATGTCAAAGCCCACGGCTCAA
 Deinococcus   AAGGGCGTGTAGGCGGATATTTAAGTCTGGTTTTAAAGACCGAGGCTCAA
 Bacillus      AAGGGCTCGCAGGCGGTTTCTTAAGTCTGATGTGAAAGCCCCCGGCTCAA
 Thermus       AAGGGCGTGTAGGCGGCCTGGGGCGTCCCATGTGAAAGACCACGGCTCAA

 Aquifex       CCGTGGAATGGCATCCCGAACTGCCCGACTTGAGGCACGCCCGGGCAGGC
 Deinococcus   CCTCGGGAGTGGACTGGATACTGGATGTCTTGACCTCTGGAGAGGTAACT
 Bacillus      CCGGGGAGGGTCATTGGAAACTGGGGAACTTGAGTGCAGAAGAGGAGAGT
 Thermus       CCGTGGGGGAGCGTGGGATACGCTCAGGCTAGACGGTGGGAGAGGGTGGT

 Aquifex       GGAATTCCCGGGGTAGCGGTGAAATGCGTAGATCTCGGGAGGAACACCGA
 Deinococcus   GGAATTCCTGGTGTAGCGGTGGAATGCGTAGATACCAGGAGGAACACCAA
 Bacillus      GGAATTCCACGTGTAGCGGTGAAATGCGTAGAGATGTGGAGGAACACCAG
 Thermus       GGAATTCCCGGAGTAGCGGTGAAATGCGCAGATACCGGGAGGAACGCCGA

 Aquifex       AGGGGAAGCCAGCCTGCTGGGGCTGTCCTGACGGTCAGGGACGAAAGCCG
 Deinococcus   TGGCGAAGGCAAGTTACTGGACAGAAGGTGACGCTGAGGCGCGAAAGTGT
 Bacillus      TGGCGAAGGCGACTCTCTGGTCTGTAACTGACGCTGAGGAGCGAAAGCGT
 Thermus       TGGCGAAGGCAGCCACCTGGTCCACCCGTGACGCTGAGGCGCGAAAGCGT

 Aquifex       GGGGAGCGAACCGGATTAGATACCCGGGTAGTCCCGGCCGTAAACCATGG
 Deinococcus   GGGGAGCAAACCGGATTAGATACCCGGGTAGTCCACACCCTAAACGATGT
 Bacillus      GGGGAGCGAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA
 Thermus       GGGGAGCAAACCGGATTAGATACCCGGGTAGTCCACGCCCTAAACGATGC

 Aquifex       GCGCTAGGGCTGCAGGCTCGCAGCTAACGCGTTAAGCGCCCCGCCTGGGG
 Deinococcus   ACGTTGGCTAATGCTTGGCGAAGCTAACGCGATAAACGTACCGCCTGGGA
 Bacillus      GTGCTAAGTGTTTAGTGCTGCAGCTAACGCATTAAGCACTCCGCCTGGGG
 Thermus       GCGCTAGGTCTTGGGGGCCGAAGCTAACGCGTTAAGCGCGCCGCCTGGGG

 Aquifex       AGTACGGGCGCAAGCCTGAAACTCAAAGGAATTGGCGGGGGCCCGCACAA
 Deinococcus   AGTACGGCCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAA
 Bacillus      AGTACGGTCGCAAGACTGAAACTCAAAGGAATTGACGGGGGCCCGCACAA
 Thermus       AGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAA

 Aquifex       CCGGTGGAGCGTCTGGTTCAATTCGATGCTAACCGAAGAACCTTACCCGG
 Deinococcus   GCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGG
 Bacillus      GCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGG
 Thermus       GCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGG

 Aquifex       GCTTGACATGGCACAGGTGGTGCATGGCCGTCGTCAGCTCGTGTCGTGAG
 Deinococcus   TCTTGACATGACACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAG
 Bacillus      TCTTGACATCTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAG
 Thermus       CCTTGACATGGCACAGGTGCTGCATGGCCGTCGTCAGCTCGTGCCGTGAG

 Aquifex       ATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTGCCCCTAGTTGCTGA
 Deinococcus   ATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGCTTCCAGTTGCCGG
 Bacillus      ATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGATCTTAGTTGCCGG
 Thermus       GTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCCGCCGTTAGTTGCCGG

 Aquifex       GCACTCTAGGGGGACCGCCGGCGCCGGAGGAAGGGGGGGATGACGTCAGG
 Deinococcus   GCACTCTGGAGGGACTGCCTGTGCAGGAGGAAGGCGGGGATGACGTCTAG
 Bacillus      GCACTCTAAGGTGACTGCCGGTGCCGGAGGAAGGTGGGGATGACGTCAAA
 Thermus       GCACTCTAACGGGACTGCCCGCGCGGGAGGAAGGAGGGGACGACGTCTGG

 Aquifex       TCAGTATGCCCTTTATGCCCGGGGCCACACAGGCGCTACAGTGGCCGGGA
 Deinococcus   TCAGCATGGTCCTTACGTCCTGGGCTACACACGTGCTACAATGGATAGGA
 Bacillus      TCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACAGAA
 Thermus       TCAGCATGGCCCTTACGGCCTGGGCGACACACGTGCTACAATGCCC--TA

 Aquifex       CAATGGGAAGCGACCCCGCAAGGGGGAGCTAATCCCAGAAACCCGGTCAT
 Deinococcus   CAACGCGCAGCAAACATGTGAGTGTAAGCGAATCGCTGAAACCTATCCCC
 Bacillus      CAAAGGGCAGCGAAACCGCGAGGTTAAGCCAATCCCACAAATCTGTTCTC
 Thermus       CAAAGCGATGCCACCCGGCAACGGGGAGCTAATCGCAAAAAGGTGGGCCC

 Aquifex       GGTGCGGATTGGGGGCTGAAACTCGCCCCCATGAAGCCGGAATCGGTAGT
 Deinococcus   AGTTCAGATCGGAGTCTGCAACTCGACTCCGTGAAGTTGGAATCGCTAGT
 Bacillus      AGTTCGGATCGCAGTCTGCAACTCGACTGCGTGAAGCTGGAATCGCTAGT
 Thermus       AGTTCGGATTGGGGTCTGCAACCCGACCCCATGAAGCCGGAATCGCTAGT

 Aquifex       AACGGGGTATCAGCGATGTCCCCGTGAATACGTTCTCGGGCCTTGCACAC
 Deinococcus   AATCGCGGGTCAGC-ATACCGCGGTGAATACGTTCCCGGGCCTTGTACAC
 Bacillus      AATCGCGGATCAGC-ATGCCGCGGTGAATACGTTCCCGGGCCTTGTACAC
 Thermus       AATCGCGGATCAGCCATGCCGCGGTGAATACGTTCCCGGGCCTTGTACAC

 Aquifex       ACCGCCCGTCACGCCACGGAAGTCGGTCCGGCCGGAAGGACTGGGGCGAA
 Deinococcus   ACCGCCCGTCACACCATGGGAGTAGATTGCAGTTGAAAGACTGGGGTGAA
 Bacillus      ACCGCCCGTCACACCACGAGAGTTTGTAACACCCGAAGGATTGGGGTGAA
 Thermus       ACCGCCCGTCACGCCATGGGAGCGGGCTCTACCCGAAGGACTGGGGCGAA

 Aquifex       GTCGTAACAAGGTAGCCGTAGGG
 Deinococcus   GTCGTAACAAGGTAACTGTACCG
 Bacillus      GTCGTAACAAGGTAGCCGTATCG
 Thermus         GTCGTAACAAGGTAGCTGTACCG
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