MORGAN Version 3.1 gl_auto-3.1 Wed Mar 6 21:47:02 2013 === Parsing of parameter statements completed === Trait data are genotypic Genotypic data at trait locus are to be read from integer 2 in the pedigree record Sequential imputation to be used for setup, using 300 samples MCMC is being done for each component separately Sampling is to be by scan, with scores estimated every scan L-sampler probability set to 0.500 The number of MC burn-in iterations is 100 Number of MC iterations requested is 3000 with progress checked every 600 iterations Interim scores file to be written every 30 scored iterations === Checking of parameter statements completed === Opened input pedigree file "ped52.MORGAN.ped" === Checking of pedigree file completed === Opened input pedigree file "ped52.MORGAN.ped" Listing of pedigree meioses by individual: name name.pa name.ma component pat.meio mat.meio 101 0 0 1 0 0 102 0 0 1 0 0 201 101 102 1 2 1 202 101 102 1 4 3 2010 0 0 1 0 0 301 201 2010 1 6 5 302 201 2010 1 8 7 303 201 2010 1 10 9 304 201 2010 1 12 11 2020 0 0 1 0 0 305 2020 202 1 14 13 306 2020 202 1 16 15 307 2020 202 1 18 17 308 2020 202 1 20 19 3010 0 0 1 0 0 401 301 3010 1 22 21 402 301 3010 1 24 23 403 301 3010 1 26 25 404 301 3010 1 28 27 3040 0 0 1 0 0 405 3040 304 1 30 29 406 3040 304 1 32 31 407 3040 304 1 34 33 408 3040 304 1 36 35 3050 0 0 1 0 0 410 305 3050 1 38 37 411 305 3050 1 40 39 412 305 3050 1 42 41 3080 0 0 1 0 0 414 3080 308 1 44 43 415 3080 308 1 46 45 416 3080 308 1 48 47 4010 0 0 1 0 0 501 401 4010 1 50 49 502 401 4010 1 52 51 503 401 4010 1 54 53 504 401 4010 1 56 55 4040 0 0 1 0 0 505 4040 404 1 58 57 506 4040 404 1 60 59 507 4040 404 1 62 61 508 4040 404 1 64 63 4050 0 0 1 0 0 509 405 4050 1 66 65 510 405 4050 1 68 67 511 405 4050 1 70 69 512 405 4050 1 72 71 4080 0 0 1 0 0 513 4080 408 1 74 73 514 4080 408 1 76 75 515 4080 408 1 78 77 516 4080 408 1 80 79 Hexadecimal sampler seeds: 0xb69cb2f5 0x562302c9 === Setup for MCMC completed === === Inheritance indicators initialized using sequential imputation === === Setup for marriage structure completed === Opened output score file "framework.IVs" ====== Component 1 will be determined using MCMC ====== === MCMC sampling begun === Now starting 100 iterations of burn-in Now starting 3000 iterations of MCMC Starting M-sampler iteration 600 Starting M-sampler iteration 1200 Starting L-sampler iteration 1800 Starting M-sampler iteration 2400 Starting M-sampler iteration 3000 === MCMC sampling completed === Summary for component 1: hostname: elk.statgen.washington.edu system time: 1.340 sec user time: 1226.740 sec elapsed time: 0 hr 20 min 29 sec