reaction_source_mol.h

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#pragma once
 
// wxm includes
#include "apps/wmapplication.h"
#include "app_setup_helper.h"
 
// STL includes
#include <memory>
 
namespace wxm
{
namespace apps
{
namespace five_moment
{
 
class ReactionSourceMol : public WmApplication
{
public:
    ReactionSourceMol();
 
    ~ReactionSourceMol() override;
 
    void setup(const WxCryptSet& wxc) override;
 
    const std::vector<int>& getInputVariableIndexes(int flag) const override
    {
        return _input_variables;
    }
 
    const std::vector<int>& getAuxiliaryVariableIndexes(int flag) const override
    {
        return _aux_variables;
    }
 
    const std::vector<int>& getOutputVariableIndexes(int flag) const override
    {
        return _input_variables;
    }
 
    real source(const real* q,
                const real* aux,
                const elementGeometry_t* pEG,
                real* source) const override;
 
protected:
    std::unique_ptr<AppSetupHelper> _setup_helper;
 
    real _min_density;   
    real _min_pressure;  
    real _gas_gamma;     
    real _gas_gamma_mol; 
    real _Ae;            
    real _Ai;            
    real _Aa;            
    real _Am;            
    int _species;
 
    int _atom;
    
    real _ompt; 
    real _omct; 
    real _L;    
    real _eps0; 
    real _ni_floor;
 
    real _dt_lambda;
 
    std::vector<int> _input_variables;
    std::vector<int> _aux_variables;
 
private:
    ReactionSourceMol& operator=(const ReactionSourceMol& var);
    ReactionSourceMol(const ReactionSourceMol& var);
};
} // namespace five_moment
} // namespace apps
} // namespace wxm