reaction_source.h

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#pragma once
 
// Wm includes
#include "apps/wmapplication.h"
 
// STL includes
#include <memory>
 
namespace wxm
{
namespace apps
{
namespace five_moment
{
 
class reaction_source_t : public WmApplication
{
public:
    reaction_source_t();
 
    ~reaction_source_t() override;
 
    void setup(const WxCryptSet& wxc) override;
 
    const std::vector<int>& getInputVariableIndexes(int flag) const override
    {
        return _input_variables;
    }
 
    const std::vector<int>& getAuxiliaryVariableIndexes(int flag) const override
    {
        return _aux_variables;
    }
 
    const std::vector<int>& getOutputVariableIndexes(int flag) const override
    {
        return _input_variables;
    }
 
    real source(const real* q,
                const real* aux,
                const elementGeometry_t* pEG,
                real* source) const override;
 
protected:
    int _species;
    int _atom;
    real _Ae;
    real _Ai;
    real _Aa;
    real _ompt;
    real _omct;
    real _L;
    real _eps0;
    real _phi_ion;
    real _phi_eff;
    real _ni_floor;
    real _dt_lambda;
 
    std::vector<int> _input_variables;
    std::vector<int> _aux_variables;
 
    // pointer to subapplications and boolean
    std::unique_ptr<WmApplication> _floor_app;
    bool _has_floor_app;
 
private:
    reaction_source_t& operator=(const reaction_source_t& var);
    reaction_source_t(const reaction_source_t& var);
};
} // namespace five_moment
} // namespace apps
} // namespace wxm