The scripts that I used for IBD mapping in the WTCCC type 1 diabetes data can be downloaded here.
Copyright (c) 2011 Sharon R. Browning
This page was last updated on 20 October 2011
Please note that these scripts are meant to be a guide rather than plug-and-play. Included in the gzipped archive are python and R scripts, as well as bash scripts to execute them. Have a look at the overarching bash script file "commands" first. This gives the full sequence of procedures. Please let me know if you find that any necessary files are missing, or if you have any comments. You are welcome to modify the scripts and redistribute them, as long as you give appropriate credit.
All rights reservedBecause these scripts are licensed free of charge, there is NO WARRANTY for the program, to the extent permitted by applicable law. Sharon Browning (the copyright holder) and/or other parties provide the program "as is" without warranty of any kind, either expressed or implied, including, but not limited to, the implied warranties of merchantability and fitness for a particular purpose. The entire risk as to the quality and performance of the program is with you. Should the program prove defective, you assume the cost of all necessary servicing, repair or correction. In no event unless required by applicable law or agreed to in writing will any copyright holder be liable to you for damages, including any general, special, incidental or consequential damages arising out of the use or inability to use the program (including but not limited to loss of data or data being rendered inaccurate or losses sustained by you or third parties or a failure of the program to operate with any other programs), even if such holder or other party has been advised of the possibility of such damages.