runmode = 0 seqtype = 1 CodonFreq = 2 model = 0 ncatG = 10 NSsites = 7 fix_omega = 0 omega = 0.30 fix_kappa = 0 cleandata = 0 method = 0 noisy = 2 outfile = codeml_test_out.txt seqfile = codons_test.paln treefile = tree_test.dnd