Ali Shojaie

  • Home
  • Research
  • Teaching
  • Software
  • People

    Software

      Below are selected software tools for some of the methods we have recently developed. Please visit my GitHub repo for more information and additional software.
    • R-package netgsa for Network Based Gene Set Analysis
    • R-package: grangerTlasso (Graphical Granger Causality using Truncating Lasso)
      Note 1: This is an early test release of the package, and is intended for experimental use only. The R-package glmnet should be installed in order for this package to work.
      Note 2: The grangerTlasso package is no longer maintained and is replaced with the ngc package (Network Granger Causality), which implements multiple related methods and is available on GitHub.
    • R-package: spacejam (Graph Estimation with Joint Additive Models)
    • R-package: lassoscore (High-Dimensional Inference with the Penalized Score Test)
    Please send any comments and feedback to ashojaie {AT} uw {DOT} edu.

    Datasets

    • Dataset for Putluri et al (2011): zipfile