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MCDS Literature Citations

A Request: Please email additional citations that make use of the MCDS software to Dr. Rob Stewart

Journal Articles

  1. Hsiao YY, Hung TH, Tu SJ, Tung CJ. Fast Monte Carlo simulation of DNA damage induction by Auger-electron emission. Int J Radiat Biol. 2014 May;90(5):392-400. doi: 10.3109/09553002.2014.892649. Epub 2014 Mar 12. PMID: 24517473
  2. Georgakilas AG, O'Neill P, Stewart RD. Induction and repair of clustered DNA lesions: what do we know so far? Radiat Res. 2013 Jul;180(1):100-9. PMID: 23682596
  3. Kirkby C, Ghasroddashti E, Poirier Y, Tambasco M, Stewart RD. RBE of kV CBCT radiation determined by Monte Carlo DNA damage simulations. Phys Med Biol. 2013 Aug 21;58(16):5693-704. doi: 10.1088/0031-9155/58/16/5693. PMID: 23899567
  4. Frese MC, Yu VK, Stewart RD, Carlson DJ. A mechanism-based approach to predict the relative biological effectiveness of protons and carbon ions in radiation therapy. Int J Radiat Oncol Biol Phys. 2012 May 1;83(1):442-50. PMID: 22099045
  5. Neshasteh-Riz A1, Koosha F, Mohsenifar A, Mahdavi SR. DNA Damage Induced in Glioblastoma Cells by I-131: A Comparison between Experimental Data and Monte Carlo Simulation. Cell J. 2012 Spring;14(1):25-30. PMID: 23626934
  6. Wang CC, Hsiao Y, Lee CC, Chao TC, Wang CC, Tung CJ. Monte Carlo simulations of therapeutic proton beams for relative biological effectiveness of double-strand break. Int J Radiat Biol. 2012 Jan;88(1-2):158-63. PMID: 21823821
  7. Chao TC, Wang CC, Li J, Li C, Tung CJ. Cellular- and micro-dosimetry of heterogeneously distributed tritium. Int J Radiat Biol. 2012 Jan;88(1-2):151-7. PMID: 21770699
  8. R.D. Stewart, V.K. Yu, A.G. Georgakilas, C. Koumenise, J.H. Park, D.J. Carlson, Effects of Radiation Quality and Oxygen on Clustered DNA Lesions and Cell Death, Radiat. Res. 176, 587-602 (2011).
  9. Yoshii Y, Sutherland K.L., Date H. Electron track analysis for damage formation in bio-cells, NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION B-BEAM INTERACTIONS WITH MATERIALS AND ATOMS  Volume: 269   Issue: 17   Pages: 1887-1891   DOI: 10.1016/j.nimb.2011.05.028   Published: SEP 1 2011
  10. Sage Evelyne; Harrison Lynn, Clustered DNA lesion repair in eukaryotes: Relevance to mutagenesis and cell survival, MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS  Volume: 711   Issue: 1-2   Special Issue: SI   Pages: 123-133   DOI: 10.1016/j.mrfmmm.2010.12.010   Published: JUN 3 2011
  11. Surdutovich E.; Yakubovich A. V.; Solov'yov A. V. Multiscale approach to radiation damage induced by ion beams: complex DNA damage and effects of thermal spikes, EUROPEAN PHYSICAL JOURNAL D  Volume: 60   Issue: 1   Pages: 101-108   DOI: 10.1140/epjd/e2010-00232-3   Published: OCT 2010
  12. Van den Heuvel F.; Locquet Jean-Pierre; Nuyts S. Beam energy considerations for gold nano-particle enhanced radiation treatment, PHYSICS IN MEDICINE AND BIOLOGY  Volume: 55   Issue: 16   Pages: 4509-4520   DOI: 10.1088/0031-9155/55/16/S06   Published: AUG 21 2010 
  13. Shi, CY (Shi, Chengyu); Guo, BQ (Guo, Bingqi); Cheng, CY (Cheng, Chih-Yao); Eng, T (Eng, Tony); Papanikolaou, N (Papanikolaou, Nikos), Applications of tissue heterogeneity corrections and biologically effective dose volume histograms in assessing the doses for accelerated partial breast irradiation using an electronic brachytherapy source. PHYSICS IN MEDICINE AND BIOLOGY, 55 (18): 5283-5297 SEP 21 2010. ISSN: 0031-9155 DOI: 10.1088/0031-9155/55/18/003
  14. Van den Heuvel, F; Locquet, JP (Locquet, Jean-Pierre); Nuyts, S (Nuyts, S.), Beam energy considerations for gold nano-particle enhanced radiation treatment. PHYSICS IN MEDICINE AND BIOLOGY, 55 (16): 4509-4520 AUG 21 2010. ISSN: 0031-9155 DOI: 10.1088/0031-9155/55/16/S06
  15. Harper, JV (Harper, Jane V.); Anderson, JA (Anderson, Jennifer A.); O'Neill, P (O'Neill, Peter), Radiation induced DNA DSBs: Contribution from stalled replication forks? DNA REPAIR, 9 (8): 907-913 AUG 5 2010. ISSN: 1568-7864 DOI: 10.1016/j.dnarep.2010.06.002
  16. Tavares, AAS (Tavares, Adriana Alexandre S.); Tavares, JMRS (Tavares, Joao Manuel R. S.), Evaluating Tc-99m Auger electrons for targeted tumor radiotherapy by computational methods. MEDICAL PHYSICS, 37 (7): 3551-3559 JUL 2010. ISSN: 0094-2405 DOI: 10.1118/1.3451117
  17. Zhang, LM (Zhang, Liming); Tan, ZY (Tan, Zhenyu), A new calculation on spectrum of direct DNA damage induced by low-energy electrons. RADIATION AND ENVIRONMENTAL BIOPHYSICS, 49 (1): 15-26 MAR 2010. ISSN: 0301-634X DOI: 10.1007/s00411-009-0262-8
  18. Wang, CKC (Wang, C. -K. Chris), The progress of radiobiological models in modern radiotherapy with emphasis on the uncertainty issue. MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH, 704 (1-3): 175-181 Sp. Iss. SI APR-JUN 2010. ISSN: 1383-5742 DOI: 10.1016/j.mrrev.2010.02.001
  19. Nikjoo, H (Nikjoo, Hooshang); Lindborg, L (Lindborg, Lennart). RBE of low energy electrons and photons. PHYSICS IN MEDICINE AND BIOLOGY, 55 (10): R65-R109 MAY 21 2010. ISSN: 0031-9155 DOI: 10.1088/0031-9155/55/10/R01
  20. Malyarchuk, S (Malyarchuk, Svitlana); Castore, R (Castore, Reneau); Harrison, L (Harrison, Lynn). Apex1 can cleave complex clustered DNA lesions in cells. DNA REPAIR, 8 (12): 1343-1354 DEC 3 2009. ISSN: 1568-7864 DOI: 10.1016/j.dnarep.2009.08.008
  21. Bousis, C (Bousis, C.); Emfietzoglou, D (Emfietzoglou, D.); Hadjidoukas, P (Hadjidoukas, P.); Nikjoo, H (Nikjoo, H.), A Monte Carlo study of cellular S-factors for 1 keV to 1 MeV electrons. PHYSICS IN MEDICINE AND BIOLOGY, 54 (16): 5023-5038 AUG 21 2009. ISSN: 0031-9155 DOI: 10.1088/0031-9155/54/16/012
  22. Abolfath, RM (Abolfath, Ramin M.), Optical Control of DNA Base Radio Sensitivity. JOURNAL OF PHYSICAL CHEMISTRY B, 113 (19): 6938-6941 MAY 14 2009. ISSN: 1520-6106 DOI: 10.1021/jp901425p
  23. Bernal, MA (Bernal, M. A.); Liendo, JA (Liendo, J. A.), An investigation on the capabilities of the PENELOPE MC code in nanodosimetry. MEDICAL PHYSICS, 36 (2): 620-625 FEB 2009. ISSN: 0094-2405 DOI: 10.1118/1.3056457
  24. Shikazono, N (Shikazono, Naoya); Noguchi, M (Noguchi, Miho); Fujii, K (Fujii, Kentaro); Urushibara, A (Urushibara, Ayumi); Yokoya, A (Yokoya, Akinari), The Yield, Processing, and Biological Consequences of Clustered DNA Damage Induced by Ionizing Radiation. JOURNAL OF RADIATION RESEARCH, 50 (1): 27-36 JAN 2009. ISSN: 0449-3060 DOI: 10.1269/jrr.08086
  25. Reniers, B (Reniers, Brigitte); Liu, D (Liu, Derek); Rusch, T (Rusch, Thomas); Verhaegen, F (Verhaegen, Frank), Calculation of relative biological effectiveness of a low-energy electronic brachytherapy source. PHYSICS IN MEDICINE AND BIOLOGY, 53 (24): 7125-7135 DEC 21 2008. ISSN: 0031-9155 DOI: 10.1088/0031-9155/53/24/008
  26. Pasciak, AS (Pasciak, A. S.); Ford, JR (Ford, J. R.), Title: High-speed evaluation of track-structure Monte Carlo electron transport simulations, PHYSICS IN MEDICINE AND BIOLOGY, 53 (19): 5539-5553 OCT 7 2008. ISSN: 0031-9155 DOI: 10.1088/0031-9155/53/19/018
  27. Georgakilas, AG (Georgakilas, Alexandros G.), Title: Processing of DNA damage clusters in human cells: current status of knowledge. MOLECULAR BIOSYSTEMS, 4 (1): 30-35 2008. ISSN: 1742-206X DOI: 10.1039/b713178j
  28. Nikjoo, H (Nikjoo, H.); Uehara, S (Uehara, S.); Emfietzoglou, D (Emfietzoglou, D.); Brahme, A (Brahme, A.), Heavy charged particles in radiation biology and biophysics. NEW JOURNAL OF PHYSICS, 10: Art. No. 075006 JUL 28 2008. ISSN: 1367-2630 Article Number: 075006 DOI: 10.1088/1367-2630/10/7/075006
  29. Hada, M (Hada, Megumi); Georgakilas, AG (Georgakilas, Alexandros G.), Title: Formation of clustered DNA damage after high-LET irradiation: A review. JOURNAL OF RADIATION RESEARCH, 49 (3): 203-210 MAY 2008. ISSN: 0449-3060 DOI: 10.1269/jrr.07123
  30. Carlson, DJ (Carlson, David J.); Stewart, RD (Stewart, Robert D.); Semenenko, VA (Semenenko, Vladimir A.); Sandison, GA (Sandison, George A.), Title: Combined use of Monte Carlo DNA damage Simulations and deterministic repair models to examine putative mechanisms of cell killing. RADIATION RESEARCH, 169 (4): 447-459 APR 2008. ISSN: 0033-7587
  31. Hsiao, Y; Stewart, RD (Stewart, Robert D.), Monte Carlo simulation of DNA damage induction by x-rays and selected radioisotopes. PHYSICS IN MEDICINE AND BIOLOGY, 53 (1): 233-244 JAN 7 2008. ISSN: 0031-9155 DOI: 10.1088/0031-9155/53/1/016
  32. Stewart, RD (Stewart, Robert D.); Li, XA (Li, X. Allen), BGRT: Biologically guided radiation therapy - The future is fast approaching! MEDICAL PHYSICS, 34 (10): 3739-3751 OCT 2007. ISSN: 0094-2405 DOI: 10.1118/1.2779861
  33. Tsao, D (Tsao, Doug); Kalogerinis, P (Kalogerinis, Peter); Tabrizi, I (Tabrizi, Isla); Dingfelder, M (Dingfelder, Michael); Stewart, RD (Stewart, Robert D.); Georgakilas, AG (Georgakilas, Alexandros G.), Induction and processing of oxidative clustered DNA lesions in Fe-56-Ion-irradiated human monocytes. RADIATION RESEARCH, 168 (1): 87-97 JUL 2007. ISSN: 0033-7587
  34. Gollapalle, E (Gollapalle, Esha); Wangb, R (Wangb, Rong); Adetolu, R (Adetolu, Ronke); Tsao, D (Tsao, Doug); Francisco, D (Francisco, Dave); Sigounas, G (Sigounas, George); Georgakilas, AG (Georgakilas, Alexandros G.), Detection of oxidative clustered DNA lesions in X-irradiated mouse skin tissues and human MCF-7 breast cancer cells. RADIATION RESEARCH, 167 (2): 207-216 FEB 2007. ISSN: 0033-7587
  35. Kundrat, P (Kundrat, Pavel); Stewart, RD (Stewart, Robert D.), On the biophysical interpretation of lethal DNA lesions induced by ionising radiation. RADIATION PROTECTION DOSIMETRY, 122 (1-4): 169-172 DEC 2006. ISSN: 0144-8420 DOI: 10.1093/rpd/nc1439
  36. Tan, ZY (Tan, Zhenyu); Xia, YY (Xia, Yueyuan); Zhao, MW (Zhao, Mingwen); Liu, XD (Liu, Xiangdong). Electron stopping power and inelastic mean free path in amino acids and protein over the energy range of 20-20,000 eV. RADIATION AND ENVIRONMENTAL BIOPHYSICS, 45 (2): 135-143 JUL 2006. ISSN: 0301-634X DOI: 10.1007/s00411-006-0049-0
  37. Semenenko, VA; Stewart, RD, Fast Monte Carlo simulation of DNA damage formed by electrons and light ions. PHYSICS IN MEDICINE AND BIOLOGY, 51 (7): 1693-1706 APR 7 2006. ISSN: 0031-9155 DOI: 10.1088/0031-9155/51/7/004
  38. Kundrat, P, Detailed analysis of the cell-inactivation mechanism by accelerated protons and light ions. PHYSICS IN MEDICINE AND BIOLOGY, 51 (5): 1185-1199 MAR 7 2006. ISSN: 0031-9155 DOI: 10.1088/0031-9155/51/5/010
  39. Semenenko, VA; Stewart, RD; Ackerman, EJ, Monte Carlo simulation of base and nucleotide excision repair of clustered DNA damage sites. I. Model properties and predicted trends. RADIATION RESEARCH, 164 (2): 180-193 AUG 2005. ISSN: 0033-7587
  40. Semenenko, VA; Stewart, RD. Monte Carlo simulation of base and nucleotide excision repair of clustered DNA damage sites. II. Comparisons of model predictions to measured data. RADIATION RESEARCH, 164 (2): 194-201 AUG 2005. ISSN: 0033-7587
  41. Semenenko, VA; Stewart, RD, A fast Monte Carlo algorithm to simulate the spectrum of DNA damages formed by ionizing radiation, RADIATION RESEARCH, 161 (4): 451-457 APR 2004. ISSN: 0033-7587

Book Chapters

  1. RD Stewart, JH Park, DJ Carlson, Chapter 7 Isoeffect Calculations in Adaptive Radiation Therapy and Treatment Individualization, In Adaptive Radiation Therapy, X.A. Li, Editor. Taylor and Francis Group, January 2011
  2. R.D. Stewart and V.A. Semenenko, Induction and Repair of DNA Damage Formed by Energetic Electrons and Light Ions, In Handbook of Cancer Models With Applications to Cancer Screening, Cancer treatment and Risk Assessment, W.Y. Tan and A. Yakovlev, Editors. World Scientific Publishing Company, (August 2008). ISBN-13: 978-9812779472

Last updated: July 29, 2014
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