Virtual Cell Virtual Cell Website School of Health Sciences Website Purdue University Website
About the Virtual Cell Download VC Examples Theory User Manual Help Archive of Biological Datasets
RMR input file used to generate fit
Human Bladder Carcinoma Cells

   MODEL: DRM=RMR CKM=QECK         
   CELL: DNA=5.667D+09 NC=46
   IRAD: CL=25                                     
   CLRP: RHT=2.2091982E-01 BMR=1.1448708E-03 PHI= 6.3836614E-03 A0=0.00
   CCKM: TCC=10 TPOT=20 GF=0.0 N0=1 KAP=1.0D+38 VOL=1
   RBM: KX=6.0E+06 FMAX=1   
!  Parameters that impact on solution accuracy
   SOLVER: DBLV=0 ETOL=1.0E-09 MXSS=999999 HMAX=10
!  Parameters that control the time steps and stopping criteria
   SIMCON: FSDX=1 TSAX=12 TCUT=96 FRDL=1.0E+00 RCUT=1.0D-09
   BCONF: MITR=10000 MXFN=100000 SGT=1.0D-04 SST=1.0D-09 FCT=1.0D-09
   MCAT: NPAR=3
   AMP1: CID=CLRP PNAM=BMR   PLB=0 PUB=1.0E-02 PIG=1.0E-04
   AMP2: CID=CLRP PNAM=PHI   PLB=0 PUB=1.0 PIG=0.01
   AMP3: CID=CLRP PNAM=RHT   PLB=0.01 PUB=12.0 PIG=2
/*
  Figure of Merit (FOM) Weight
  1: cell survival data
  2: DSB rejoining data (FAR)
  3: DSB rejoining data (Avg. DSB/cell)
  4: Transformed cells per survivor
  5: Transformed cells per irradiated cell
 */
  FOM: UW=LFWT
  LFWT = 1 0 0 0 0 /

School of Health Sciences
Purdue University
Disclaimer

Last updated: 10 June, 2011
Webmaster