Last updated 15 December 2015
GENESIS: GENetic EStimation and Inference in Structured samples (GENESIS)
Software available from Bioconductor with statistical methods for analyzing genetic data from samples with population structure and/or relatedness
REAP: Relatedness Estimation in Admixed Populations
NEW: Version 1.1 just released (January 8, 2013)!
Thornton T, Tang H, Hoffman TJ, Ochs-Balcom HM, Baan BJ, and Risch N (2012) "Estimating Kinship in Admixed Populations", American Journal of Human Genetics 91: 122-138.
MQLX_XM: Autosomal and X-chromosome
association testing of a binary trait in case-control samples with related
NEW: Version 1.0 just released!
MQLS: More powerful case-control association
test of a binary trait in samples that contain related
Version 1.5 released March 2011
Thornton T., McPeek M. S. "Case-Control Association
Related Individuals: A More Powerful Quasi-Likelihood Score Test"
(2007) American Journal of Human Genetics 81:321-337
ROADTRIPS: Case-Control Association Testing
with Partially or Completely Unknown Population and Pedigree Structure
Version 2.0 released November 2013
Thornton T., McPeek M. S.
"ROADTRIPS: case-control association testing
with partially or completely unknown population and pedigree structure" (2010) American Journal of Human Genetics 86:172-184.