Earlier today I finished trimming Hollie’s RRBS BS-seq FastQ data.

However, the original files were never analyzed with FastQC, so I ran it on the original files.

These libraries were originally created by Hollie Putnam using the TruSeq DNA Methylation Kit (Illumina):

FastQC was run, followed by MultiQC. Analysis was run on Roadrunner.

All analysis is documented in a Jupyter Notebook; see link below.

Jupyter Notebook:

Results:
FastQC output folder:
MultiQC output folder:
MultiQC report (HTML):

from Sam’s Notebook https://ift.tt/2KvNoMM

FastQC – RRBS Geoduck BS-seq FASTQ data
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