Ran the following Quast command to compare the two geoduck assemblies provided to us by Phase Genomics:

/home/sam/software/quast-4.5/quast.py \
-t 24 \
--labels 20180403_pga,20180421_pga \
/mnt/owl/Athaliana/20180421_geoduck_hi-c/Results/geoduck_roberts\ results\ 2018-04-03\ 11\:05\:41.596285/PGA_assembly.fasta \
/mnt/owl/Athaliana/20180421_geoduck_hi-c/Results/geoduck_roberts\ results\ 2018-04-21\ 18\:09\:04.514704/PGA_assembly.fasta
Results:

Quast Output folder: results_2018_04_30_11_16_04/

Quast report (HTML): results_2018_04_30_11_16_04/report.html

The two assemblies are nearly identical. Interesting…

from Sam’s Notebook https://ift.tt/2JEINax

Assembly Stats – Geoduck Hi-C Assembly Comparison
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