Getting back into gear, I am assisting Andrew ID some targets from a salmonid transcriptome. With said transcriptome I am taking the blast output and getting some protein names sans SQLshare.
The tldr can be seen here, but if you have the time I will point out the key code aspects and leave you with a tabular file.
First we had the good ol
Then I went ahead and downloaded the newest version of Swiss-prot details
joining I needed to
And with the
join I needed a few parameters
!join -t $'\t' -1 3 -2 1 \
And because we need to get to Excel
!open blastx-join-uniprot-info.tab -a "Microsoft Excel"
Volia a tab file is created that can be examined further.
from half-shell http://ift.tt/2ajge08