Strand-switching utility for BEAGLE

This is a collection of python scripts to perform strand-checking of input files from different genotyping platforms to prepare for imputation using Beagle. Scripts are also available to check for Mendelian errors in trios and parent-offspring pairs for files in Beagle format.
Copyright (c) 2009, 2011 Sharon R. Browning
This page was last updated on 6 June 2011

Link to README file (also included in the archive).

Link to archive containing the scripts.

All rights reserved

Because these scripts are licensed free of charge, there is NO WARRANTY for the program, to the extent permitted by applicable law. Sharon Browning (the copyright holder) and/or other parties provide the program "as is" without warranty of any kind, either expressed or implied, including, but not limited to, the implied warranties of merchantability and fitness for a particular purpose. The entire risk as to the quality and performance of the program is with you. Should the program prove defective, you assume the cost of all necessary servicing, repair or correction.

In no event unless required by applicable law or agreed to in writing will any copyright holder be liable to you for damages, including any general, special, incidental or consequential damages arising out of the use or inability to use the program (including but not limited to loss of data or data being rendered inaccurate or losses sustained by you or third parties or a failure of the program to operate with any other programs), even if such holder or other party has been advised of the possibility of such damages.