This is a collection of python scripts to process output of Beagle IBD and HBD.
Copyright (c) 2010 Sharon R. Browning
Email: sguy@uw.edu
This page was last updated on 9 November 2010
To process IBD files from multiple seeds, first run max_ibd.py. To find out how to run it, run "python max_ibd.py" (with no arguments). Then run get_ibd_tracts.py on the output of max_ibd.py to get a list of discovered ibd tracts. Again, you can find out how to run it with "python get_ibd_tracts.py". Similarly, for HBD, use max_hbd.py and get_hbd_tracts.py.
To combine results from multiple runs of BEAGLE fastIBD, and/or to apply a more stringent score threshold, use process_fibd.py.
Please e-mail me if you find any bugs.
All rights reserved
Because these scripts are licensed free of charge, there is NO WARRANTY for the program, to the extent permitted by applicable law. Sharon Browning (the copyright holder) and/or other parties provide the program "as is" without warranty of any kind, either expressed or implied, including, but not limited to, the implied warranties of merchantability and fitness for a particular purpose. The entire risk as to the quality and performance of the program is with you. Should the program prove defective, you assume the cost of all necessary servicing, repair or correction. In no event unless required by applicable law or agreed to in writing will any copyright holder be liable to you for damages, including any general, special, incidental or consequential damages arising out of the use or inability to use the program (including but not limited to loss of data or data being rendered inaccurate or losses sustained by you or third parties or a failure of the program to operate with any other programs), even if such holder or other party has been advised of the possibility of such damages.