Waters CD, Hard JJ, Brieuc MSO, Fast DE, Warheit KI, Waples RS, Knudsen CM, Bosch WJ, Naish KA. (2015) Effectiveness of managed gene flow in reducing genetic divergence associated with captive breeding. Evolutionary Applications. In press. Link
Brieuc MSO, Ono K, Drinan DP, Naish KA (2015) Integration of Random Forest with population-based outlier analyses provides insight on the genomic basis and evolution of run timing in Chinook salmon (Oncorhynchus tshawytscha). Molecular Ecology 24, 2729-2746. Link
Drinan DP, Webb MAH, Naish KA, Kalinowski ST, Boyer MC, Shepard BB, Muhlfeld CC (2015) Effects of Hybridization between Nonnative Rainbow Trout and Native Westslope Cutthroat Trout on Fitness-Related Traits. Transactions of the American Fisheries Society 144, 1275-1291. Link
Brieuc MSO, Purcell MK, Palmer A, Naish KA (2015) Genetic variation in resistance to infectious hematopoietic necrosis virus (IHNV) in a population of steelhead trout (Oncorhynchus mykiss). Diseases of Aquatic Organisms. In Press. Link
McKinney GJ, Seeb LW, Larson WA, Gomez-Uchida D, Limborg MT, Brieuc MSO, Everett MV, Naish KA, Waples RK, Seeb JE (2015) A consolidated linkage map reveals candidate genes underlying adaptive variation in Chinook salmon. Molecular Ecology Resources. Link
Kodama M , Brieuc MSO , Devlin RH , Hard JJ , Naish KA (2014). Comparative mapping between coho salmon Oncorhynchus kisutch and Pacific salmonids reveals the role of chromosomal rearrangements in re-diploidization, following a whole genome duplication event. G3: Genes|Genomes|Genetics. 4, 1717-1730. Link
Brieuc MSO, Waters CD, Seeb JE, Naish KA (2014) A dense linkage map for Chinook salmon (Oncorhynchus tshawytscha) reveals variable chromosomal divergence after an ancestral Whole Genome Duplication event. G3: Genes|Genomes|Genetics 4, 447-460. Link
Soare TW, Kumar A, Naish KA, O’Donnell S (2014) Genetic evidence for landscape effects on dispersal in the army ant Eciton burchellii. Molecular Ecology 23, 96-109. Link
Phillips RB, Park LK, Naish KA (2013) Assignment of Chinook salmon (Oncorhynchus tshawytscha) linkage groups to specific chromosomes reveals a karyotype with multiple rearrangements of the chromosome arms of rainbow trout (Oncorhynchus mykiss). G3: Genes|Genomes|Genetics 3, 2289-2295. Link
Naish KA, Phillips RB, Brieuc MSO, Newton LR, Elz AE, Park LK (2013) Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. G3: Genes|Genomes|Genetics 3, 2281-2288. Link
Ostberg C, Hauser L, Pritchard V, Garza JC, Naish KA (2013) Chromosome rearrangements, recombination suppression, and limited segregation distortion in hybrids between Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) and rainbow trout (O. mykiss). BMC Genomics 14, 570. Link
Naish KA, Seamons TR, Dauer MB, Hauser L, Quinn TP (2013) Relationship between effective population size, inbreeding and adult fitness-related traits in a steelhead (Oncorhynchus mykiss) population released in the wild. Molecular Ecology 22, 1295-1309. Link
Kodama M, Hard JJ, Naish KA (2012) Temporal variation and selection on body length and date of return in a wild population of coho salmon, Oncorhynchus kisutch. BMC Evolutionary Biology 12, 116. Link
Seamons TR, Hauser L, Naish KA, Quinn TP (2012) Can interbreeding of wild and artificially propagated animals be prevented by using broodstock selected for a divergent life history? Evolutionary Applications 5, 705-719. Link
Brieuc MSO, Naish KA (2011) Detecting signatures of positive selection in partial sequences generated on a large scale: pitfalls, procedures and resource. Molecular Ecology Resources 11, 172-183. Link
Seeb JE, Carvalho GR, Hauser L, Naish K, Roberts S, Seeb LW (2011) Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms. Molecular Ecology Resources 11, 1-8. Link
Eldridge WH, Hard JJ, Naish KA (2010) Simulating fishery-induced evolution in chinook salmon: the role of gear, location, and genetic correlation among traits. Ecological Applications 20, 1936-1948. Link
McClelland EK, Naish KA (2010) Quantitative trait locus analysis of hatch timing, weight, length and growth rate in coho salmon, Oncorhynchus kisutch. Heredity 105, 562-573. Link
O’Malley KG, McClelland EK, Naish KA (2010) Clock Genes Localize to Quantitative Trait Loci for Stage-Specific Growth in Juvenile Coho Salmon, Oncorhynchus kisutch. Journal of Heredity 101, 628-632. Link
Dauer M, Seamons T, Hauser L, Quinn TP, Naish KA (2009) Estimating the ratio of hatchery-produced to wild adult steelhead on the spawning grounds using scale pattern analyses Transactions of the American Fisheries Society 138, 15-22. Link
Eldridge WH, Myers JM, Naish KA (2009) Long term changes in fine scale population structure of coho salmon populations (Oncorhynchus kisutch) subject to extensive supportive breeding. Heredity 103, 299–309. Link
Hard J.J. , Eldridge WH, Naish KA (2009) Genetic consequences of size-selective fishing: implications for viability of Yukon River Chinook salmon. American Fisheries Society Symposium 70, 1-22. Link
Waples RS, Naish KA (2009) Genetic and evolutionary considerations in fishery management: Research needs for the future. In: The Future of Fisheries Science in North America (eds. Beamish R, Rothschild B), pp. 427-451. Springer, Fish and Fisheries Series. Link
McClelland EK, Naish KA (2008) A genetic linkage map for coho salmon (Oncorhynchus kisutch). Animal Genetics 39, 169-179. Link
Naish KA, Hard JJ (2008) Bridging the gap between the phenotype and the genotype: linking genetic variation, selection, and adaptation in fishes. Fish and Fisheries 9, 396-422. Link
Naish KA, Taylor JE, Levin PS, Quinn TP, Winton JR, Huppert D, Hilborn R (2008) An evaluation of the effects of conservation and fishery enhancement hatcheries on wild populations of salmon. Advances in Marine Biology 53, 61-194. Link
Eldridge WH, Naish KA (2007) Long term effects of translocation and release numbers on fine scale population structure among coho salmon (Onchorhynchus kisutch) Molecular Ecology 16, 2407-2421. Link
McClelland EK, Naish KA (2007a) What is the fitness outcome of crossing unrelated fish populations? A meta-analysis and an evaluation of future research directions. Conservation Genetics 8, 397-416. Link
McClelland EK, Naish KA (2007b) Comparisons of FST and QST of growth related traits in two populations of coho salmon. Transactions of the American Fisheries Society 136, 1276-1284. Link
Phillips RB, Dekoning JJ, Nichols KM, Rexroad C, Gahr S, Danzmann RG, Naish KA, Drew RE, Thorgaard GH (2007) Assignment of rainbow trout linkage groups to salmonid chromosomes, S299-S300.
Spies IB, Anderson EC, Naish KA, Bentzen P (2007) Evidence for the existence of a native population of sockeye salmon (Oncorhynchus nerka) and subsequent introgression with introduced populations in a Pacific Northwest watershed. Canadian Journal of Fisheries and Aquatic Sciences 64, 1209-1221. Link
Hauser L, Seamons TR, Dauer M, Naish KA, Quinn TP (2006) An empirical verification of population assignment methods by marking and parentage data: hatchery and wild steelhead (Oncorhynchus mykiss) in Forks Creek, Washington, USA. Molecular Ecology 15, 3157-3173. Link
McClelland EK, Myers JM, Hard JJ, Park LK, Naish KA (2005) Two generations of outbreeding in coho salmon (Oncorhynchus kisutch): effects on size and growth Canadian Journal of Fisheries and Aquatic Sciences 62, 2538-2547. Link
Phillips RB, Morasch MR, Park LK, Naish KA, Devlin RH (2005) Identification of the sex chromosome pair in coho salmon (Oncorhynchus kisutch): lack of conservation of the sex linkage group with Chinook salmon (Oncorhynchus tshawytscha). Cytogenetic and Genome Research 111, 166-170. Link
Woram RA, Gharbi K, Sakamoto T, Hoyheim B, Holm LE, Naish KA, McGowan C, Ferguson MM, Phillips RB, Stein J, Guyomard R, Cairney M, Taggart JB, Powell R, Davidson W, Danzmann RG (2003) Comparative genome analysis of the primary sex determining locus in five species of salmonid fish. Genome Research 13, 272-280. Link
Naish KA, Park LK (2002) Linkage relationships for 35 new microsatellite loci in chinook salmon Oncorhynchus tshawytscha. Animal Genetics 33, 316-318. Link
For a full list of publications, see ResearchGate and Google Scholar