BLASTN 2.2.20 [Feb-08-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= OR1.5.6 (879 letters) Database: chr1.fasta 1 sequences; 249,250,621 total letters Score = 1742 bits (879), Expect = 0.0 Identities = 879/879 (100%) Strand = Plus / Plus Query: 1 atgggattttcgaattcctgggatattcagattgtacatgctgctctattcttcctagtt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247782983 atgggattttcgaattcctgggatattcagattgtacatgctgctctattcttcctagtt 247783042 Query: 61 tacctggcagctgtcataggaaatctcctaatcatcatacttaccactctggatgttcac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247783043 tacctggcagctgtcataggaaatctcctaatcatcatacttaccactctggatgttcac 247783102 Query: 121 ctccaaaccccaatgtatttctttttgagaaacttgtctttcttagatttttgttacatc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247783103 ctccaaaccccaatgtatttctttttgagaaacttgtctttcttagatttttgttacatc 247783162 Query: 181 tctgtcacaattccaaaatctattgttagttccttgactcatgatacttccatttctttc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247783163 tctgtcacaattccaaaatctattgttagttccttgactcatgatacttccatttctttc 247783222 Query: 241 tttgggtgtgctctgcaagccttctttttcatggacttggcaactacggaggtagccatc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247783223 tttgggtgtgctctgcaagccttctttttcatggacttggcaactacggaggtagccatc 247783282 Query: 301 cttacagtgatgtcctatgaccgctatatggccatctgccggcctttacattatgaggtc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247783283 cttacagtgatgtcctatgaccgctatatggccatctgccggcctttacattatgaggtc 247783342 Query: 361 atcataaaccaaggtgtctgtctgaggatgatggccatgtcgtggctcagtggggtgatc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247783343 atcataaaccaaggtgtctgtctgaggatgatggccatgtcgtggctcagtggggtgatc 247783402 Query: 421 tgtggattcatgcatgtgatagcaacattctcattaccattctgtgggcgcaatagaata 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247783403 tgtggattcatgcatgtgatagcaacattctcattaccattctgtgggcgcaatagaata 247783462 Query: 481 cgtcaatttttctgtaatattccacagctcctaagcctcttagaccccaaagtaattacc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247783463 cgtcaatttttctgtaatattccacagctcctaagcctcttagaccccaaagtaattacc 247783522 Query: 541 attgagattggagtcatggtttttggtacaagtcttgtgataatctcctttgttgtaatt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247783523 attgagattggagtcatggtttttggtacaagtcttgtgataatctcctttgttgtaatt 247783582 Query: 601 actctctcctacatgtacattttttctgtcatcatgaggattccttctaaggagggtaga 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247783583 actctctcctacatgtacattttttctgtcatcatgaggattccttctaaggagggtaga 247783642 Query: 661 tcaaaaacattttctacctgcattccacatcttgtggttgtaacactctttatgatatct 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247783643 tcaaaaacattttctacctgcattccacatcttgtggttgtaacactctttatgatatct 247783702 Query: 721 ggcagcattgcctatgtgaagccaatttcaaattctccccccgttctggatgttttcctg 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247783703 ggcagcattgcctatgtgaagccaatttcaaattctccccccgttctggatgttttcctg 247783762 Query: 781 tctgcgttctacacagtcgtgcccccgaccctgaaccccgtcatctatagtctgaggaat 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247783763 tctgcgttctacacagtcgtgcccccgaccctgaaccccgtcatctatagtctgaggaat 247783822 Query: 841 agggacatgaaggcagccctgagaaggcagtgtggtccc 879 ||||||||||||||||||||||||||||||||||||||| Sbjct: 247783823 agggacatgaaggcagccctgagaaggcagtgtggtccc 247783861 Score = 48.1 bits (24), Expect = 7e-004 Identities = 33/36 (91%) Strand = Plus / Plus Query: 304 acagtgatgtcctatgaccgctatatggccatctgc 339 ||||||||| |||||||| |||||||||||||||| Sbjct: 159568433 acagtgatgggctatgaccactatatggccatctgc 159568468 Score = 44.1 bits (22), Expect = 0.011 Identities = 28/30 (93%) Strand = Plus / Minus Query: 310 atgtcctatgaccgctatatggccatctgc 339 |||||||||||||||||| | ||||||||| Sbjct: 247887000 atgtcctatgaccgctatgtagccatctgc 247886971 Score = 44.1 bits (22), Expect = 0.011 Identities = 25/26 (96%) Strand = Plus / Minus Query: 310 atgtcctatgaccgctatatggccat 335 |||||||||||||||||| ||||||| Sbjct: 247997240 atgtcctatgaccgctatgtggccat 247997215 Score = 42.1 bits (21), Expect = 0.045 Identities = 30/33 (90%) Strand = Plus / Plus Query: 310 atgtcctatgaccgctatatggccatctgccgg 342 |||||| ||||||||||| ||||| |||||||| Sbjct: 247654781 atgtcccatgaccgctatgtggccgtctgccgg 247654813 Score = 40.1 bits (20), Expect = 0.18 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 atcatcatacttaccactct 110 |||||||||||||||||||| Sbjct: 37553428 atcatcatacttaccactct 37553409 Score = 40.1 bits (20), Expect = 0.18 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 ctatgaccgctatatggccatctg 338 |||||| ||||||||||||||||| Sbjct: 158435708 ctatgatcgctatatggccatctg 158435731 Score = 40.1 bits (20), Expect = 0.18 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 tatgaccgctatatggccatctgc 339 |||||||||||| ||||||||||| Sbjct: 159284089 tatgaccgctatgtggccatctgc 159284066 Score = 40.1 bits (20), Expect = 0.18 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 tatgaccgctatatggccatctgc 339 |||||||||||| ||||||||||| Sbjct: 159409939 tatgaccgctatgtggccatctgc 159409962 Score = 40.1 bits (20), Expect = 0.18 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 tatgaccgctatatggccatctgc 339 |||||||||||| ||||||||||| Sbjct: 159505440 tatgaccgctatgtggccatctgc 159505417 Score = 38.2 bits (19), Expect = 0.70 Identities = 19/19 (100%) Strand = Plus / Minus Query: 138 tttctttttgagaaacttg 156 ||||||||||||||||||| Sbjct: 70401959 tttctttttgagaaacttg 70401941 Score = 38.2 bits (19), Expect = 0.70 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 attcctgggatattcagat 32 ||||||||||||||||||| Sbjct: 79645968 attcctgggatattcagat 79645986 Score = 38.2 bits (19), Expect = 0.70 Identities = 34/39 (87%) Strand = Plus / Plus Query: 307 gtgatgtcctatgaccgctatatggccatctgccggcct 345 |||||||||||||| ||||| | |||||||||| |||| Sbjct: 111396918 gtgatgtcctatgatcgctacctagccatctgccagcct 111396956 Score = 38.2 bits (19), Expect = 0.70 Identities = 19/19 (100%) Strand = Plus / Minus Query: 855 agccctgagaaggcagtgt 873 ||||||||||||||||||| Sbjct: 117507040 agccctgagaaggcagtgt 117507022 Score = 38.2 bits (19), Expect = 0.70 Identities = 19/19 (100%) Strand = Plus / Plus Query: 587 cctttgttgtaattactct 605 ||||||||||||||||||| Sbjct: 160927555 cctttgttgtaattactct 160927573 Score = 38.2 bits (19), Expect = 0.70 Identities = 19/19 (100%) Strand = Plus / Plus Query: 170 tttgttacatctctgtcac 188 ||||||||||||||||||| Sbjct: 237357144 tttgttacatctctgtcac 237357162 Score = 38.2 bits (19), Expect = 0.70 Identities = 28/31 (90%) Strand = Plus / Plus Query: 297 catccttacagtgatgtcctatgaccgctat 327 ||||||||| | |||||||||||||||||| Sbjct: 247902249 catccttactgccatgtcctatgaccgctat 247902279 Score = 38.2 bits (19), Expect = 0.70 Identities = 28/31 (90%) Strand = Plus / Plus Query: 310 atgtcctatgaccgctatatggccatctgcc 340 ||||| |||||||||||||| ||||| |||| Sbjct: 248308801 atgtcttatgaccgctatattgccatttgcc 248308831 Score = 38.2 bits (19), Expect = 0.70 Identities = 25/27 (92%) Strand = Plus / Plus Query: 314 cctatgaccgctatatggccatctgcc 340 ||||||||||||| |||||||||||| Sbjct: 248525334 cctatgaccgctacgtggccatctgcc 248525360 Score = 38.2 bits (19), Expect = 0.70 Identities = 25/27 (92%) Strand = Plus / Plus Query: 314 cctatgaccgctatatggccatctgcc 340 ||||||||||||| |||||||||||| Sbjct: 248652257 cctatgaccgctacgtggccatctgcc 248652283 Score = 38.2 bits (19), Expect = 0.70 Identities = 25/27 (92%) Strand = Plus / Minus Query: 314 cctatgaccgctatatggccatctgcc 340 ||||||||||||| |||||||||||| Sbjct: 248722425 cctatgaccgctacgtggccatctgcc 248722399 Score = 38.2 bits (19), Expect = 0.70 Identities = 25/27 (92%) Strand = Plus / Minus Query: 314 cctatgaccgctatatggccatctgcc 340 |||||||||||||| |||| ||||||| Sbjct: 248756714 cctatgaccgctatgtggctatctgcc 248756688