CONCLUSIONS
In this project, seven bio-acids, pH and ethanol were measured quantitatively in fermenting coffee samples at three pH ranges corresponding to (1) optimum fermentation completion (mucilage just liquified) and (2 and 3) two over-fermented ranges corresponding to approximately 0.33 pH unit and 1.5 hours past optimum to 0.7 pH unit and 4 hours past optimum, respectively.  From the quantified bio-acid and ethanol concentrations in these ranges the following conclusions can be drawn:
•The bio-acids glacturonic, formic, malic, acetic, citric and propionic are found not to vary during the conditions of over-fermentation.
•Both lactic acid and ethanol increase in concentration with statistical significance (one-tailed t test) between ranges 1 and 2 and 1 and 3.  Both lactic acid and ethanol concentrations approximately quadrupled during the period of over-fermentation.
•The use of pH as an indicator of over-fermentaion is justified.  The other species, namely, ethanol and lactic acid, track with pH and have been found to be indicative of over-fermentation.8,9
The findings of this research will lead to a better understanding of the coffee mucilage fermentation process. This knowledge can then be applied to generate coffee improvement methods beneficial to family coffee farms.  Results from this and future research may lead to new, inexpensive techniques that can be utilized and applied by impoverished coffee farmers in Nicaragua and other poverty-stricken countries impacted by the coffee crisis.
HPLC and test strip analysis of bio-acids produced in fermented                                      coffee mucilage on small farms in Nicaragua
Jackels, S.*, Edquist, B.*, Pham, T.*, Jackels, C.**, Rivas, R.***, and Vallejos, C.***
*Seattle University, Seattle WA, **University of Washington Bothell, Bothell WA, ***University of Central America Managua, Managua NI
RESULTS
Acids determined by HPLC in
fermenting coffee samples:
      
     Table 1.  Order of elution of organic acids.
      Since lactic and ascorbic acids eluted in the same peak, these acids were determined by the Reflectoquant test strip method.  Ethanol was determined by Reflectoquant test strip.
     Prior to initiation of fermentation, the following concentrations were found in freshly depulped coffee muclilage.
Table 2.  Initial Concentrations prior to fermentation.
     As shown in the Table 3 below, for 25 samples, galacturonic, formic, malic, acetic, citric and propionic acids were found not to vary during the course of fermentation.7
Table 3.  Average concentrations of non-statistically varying acids.
      As shown in Table 4, next column, for 25 samples, average lactic acid and ethanol concentrations were found to increase during the course of fermentation from range 1 to range 3.
Table 4. (See next column, above) Average concentrations and changes of lactic acid and ethanol (mg/L) during pH ranges of fermentation. aReported as: mean (standard deviation, number of batches); bReported as: change in mean (one-tailed p-value from t-test).
ABSTRACT
Small-holder coffee farmers in developing countries like Nicaragua are seeking reliable methods to produce better coffee and the information and tools needed to enter specialty coffee markets like Fair Trade and Organic.  The goal of this research is to understand the changes taking place during a critical step in coffee production on the farm: the fermentation step that uses a natural process to break down coffee mucilage fruit that clings to the coffee beans.  This paper reports the results of a field study conducted during the 2005-06 Nicaraguan coffee harvest in order to investigate the relationship between scientific control of the coffee fermentation process and the quality of the resulting roasted coffee.  First, small-scale, well-controlled laboratory fermentation was carried out on twelve different daily batches of coffee at the farm La Canavalia in Matagalpa, Nicaragua.  With otherwise identical treatment, fermentation of the small samples was halted by washing when the pH of the fermenting mass decreased from a starting pH of 5.8 to approximately 4.6, 4.3, or 3.9. Samples of coffee with mucilage were reserved and frozen for laboratory analysis.  Bio-acids were separated and quantified by HPLC (for formic, proprionic, citric, malic, acetic, and glacturonic) or Merck Reflectoquant test strips (for ascorbic and lactic). Results of this study, including correlation between the final fermentation pH and bio-acid profiles, will be presented.  This project was supported by a NSF Discovery Corps Senior Fellowship (CHE-0512867).
INTRODUCTION
      With coffee prices reaching the lowest inflation-adjusted prices in 100 years in 2001, the impact remains considerable among the poverty-stricken coffee producers in developing countries.1  Nicaragua, the second poorest country in the Western hemisphere, has lost roughly 122,000 jobs to the crisis and has experienced a notable impact on family farms.2  One solution to the crisis is to aid family farms with development programs.  Cooperative groups of farmers are working toward organic and fair-trade certifications and are using inexpensive methods to farm and produce better coffee for specialty markets in developed countries.
       Though there are several steps in the processing of coffee, the fermentation step (step 6, Fig. 1) is the step of focus for this research.  Over-fermentation and under-fermentation of coffee mucilage alters the beverage’s quality by creating an unpleasant taste and smell.3 Currently, most Nicaraguan coffee producers determine the completion time for fermentation of coffee mucilage manually.  This is problematic since the fermenting mucilage must be checked on periodically given that the amount of time needed to ferment has many variables and is different each day.
      Previously, our research has connected pH of coffee mucilage to stages of fermentation. 4  The pH of coffee mucilage at different points of fermentation (under, over and optimal fermentation) was measured and lead to the findings that coffee is optimally fermented around a pH of 4.6 and as coffee mucilage becomes more fermented, the pH decreases.
METHODS
      During the harvest of December 2005, small-scale, well-controlled fermentation was carried out on eleven daily batches of coffee processed on the farm La Canavalia in Matagalpa, Nicaragua.  Each field experiment consisted of six buckets derived from a common batch of coffee.  The fermentation was terminated and samples were collected at the time of washing which was controlled such that the pH was in the range 4.5 – 4.8 (range 1), 4.1 – 4.4 (range 2), or 3.6 – 4.0 (range 3).  Fermentation was “complete,” meaning that the mucilage was liquified, in range 1 so that ranges 2 and 3 were over-fermented by 1.5 to 4 hours.  Samples were collected and frozen after being field analyzed for pH, glucose, lactic acid and ethanol.
      Subsequently, in the Seattle University laboratory, coffee mucilage samples were prepared by thawing sample coffee beans with attached mucilage.  30 g of coffee sample were mixed with 50 mL of purified water.  The mixture was stirred for forty-five minutes with the magnetic stir bar and 4.5mL aliquots of the solution were taken and centrifuged (5 min at 10,000 g).   The supernatant was filtered twice through 0.45 μm micrometer filters.  Finally, 1400 μl of the resulting liquid was then placed in a vial containing a 200 μL of pyrazinecarboxylic acid standard solution (0.05mg/mL) for analysis by HPLC (Agilent 1100 series instrument). The mobile phase was 0.5 % aqueous ammonium phosphate at pH 2.8. The flow rate was 0.8 mL/min.with an Alltech Prevail column (5 μm particle size, 4.6 mm x 150 mm size) and detection in the ultraviolet (Spectraphysics Model 8450) at 260 nm. 
REFERENCES
1 Oxfam International. 2003. Mugged:  Poverty in your Coffee Cup.  Oxford, U.K.: Oxfam Publishing Nov. 2003. 58P.
2 International Coffee Organization. 2003.  Impact of the coffee crisis on poverty in producing countries.  London:  International Coffee Organization.  International Coffee Council document 89-5. 10 p. Available:  http://www.ico.org/documents/icc89-5r1e.pdf.
3 Lopez, C.I.; Bautista, E.; Moreno, E.; Dentan, E. ASIC 1989, 13, 373-384.
4 Jackels, S.; Jackels, C. J. of Food Science. 2005, 70, 321-325.
5 Jackels, C.; Jackels, S.; Kleven, S.; Fraser-Dauphinne, S.; Vallejos, C.  Proceedings of the 21st ASIC meeting.  2006, 434-443.
6 http://www.merck.com.my/reflectoquant.html
7 Rivas, R. Undergraduate Research Thesis, University of Central America Managua, 2006.
8 Avallone, S.; Guiraud, J.P.; Guyot, B.; Olguin, E.; Brillouet, J.M.  J. of Agricultural and Food Chemistry. 2001, 49, 5556-5559.
9 Avallone, S.; Brillouet, J.M.; Guyot, B.; Olguin, E.; Guiraud, J.P.  International J. of Food Science and Technology 2002, 37, 191-198.
Background Image from Flickr: http://flickr.com/photos/tonx/145685020/
RESEARCH QUESTION
       What is the relationship between the pH and the concentration of bio-acids in coffee mucilage sampled at different stages of fermentation? Hpothesis: lactic acid is responsible for the drop in pH at the time of completion.
5.   Pulped coffee emerging from the cherry pulping machine
6.   Pulped coffee in a cement tank with a drain (no water added) for natural fermentation
7.   Washing the mucilage from the fermented coffee
8.   Drying and sorting defective coffee beans
9.   Final drying stage, under the sun
10. Coffee stored in warehouse until sold
Figure 1. Steps in coffee process on the farm Nicaragua.
1.   Harvesting of ripe coffee cherries
2.   Sorting picked cherries to remove unripe cherries
3.   Coffee cherries washed and selected by density
4.   Coffee cherries mechanically pulped in the wet mill building
Optimal fermentation is the point when the mucilage is liquifed so that it can be washed off the beans. Previous field research5 established the variation of pH during the coffee fermentation period as shown in Fig. 2.
 
These studies established that the coffee mucilage became liquified in pH range 1 (4.5 – 4.8) and in ranges 2 and 3 the coffee was over-fermented resulting in a decrease in coffee quality observed in the resulting roasted coffee in the cup.5
The goal of the present research is to understand the changes taking place during the natural fermentation step in coffee processing.  Toward this end, we used HPLC and enzyme- based test strips to measure bio-acid concentrations in controlled experiments on fermenting coffee.
     
The HPLC data were collected with the Peak SimpleTM system and were quantified by peak integration in comparison with calibration curves of the pure acids.  Statistical analysis of the results was carried out with Excel.
These solutions were also tested for lactic and ascorbic acid concentrations and pH using the reflectoquant system.6
Figure 2.  Curve showing the variation of pH during coffee fermentation.
ACKNOWLEDGEMENTS
This project was supported by a NSF Discovery Corps Senior Fellowship (CHE-0512867).  Edquist and Pham acknowledge summer research support through a Merck/AAAS grant.  The authors thank Catholic Relief Services/Nicaragua and the cooperative ADDAC for access to the farm and use of coffee during processing.
15.1
Standard (pyrazine carboxylic acid)
11.4
Propionic
6.1
Citric
4.5
Acetic
3.9
Lactic and Ascorbic
3.3
Malic
2.7
Formic
2.1 min.
Galacturonic
HPLC elution time
Organic Acid
10
130
Propionic
30
250
Citric
80
320
Acetic
60
220
Malic
190
340
Formic
320
10,600
Galacturonic
Standard Deviation
Average Concentration (mg/L)
Acid
377 (291, 9)
117 (26, 9)
3.88 (.16, 9)
Range 3a
110 (.044)
41 (.009)
-0.33 (.0005)
Change (1→2)b
266 (.034)
88 (.024)
-0.70 (2.9 x 10-6)
Change (1→3)b
221 (129, 11)
70 (31, 11)
4.25 (.14, 11)
Range 2a 
111 (45, 5)
29 (17, 5)
4.58 (.18, 5)
Range 1a 
Ethanol
Lactic Acid
pH
Table 4.
515
2,150 mg/L
Glucose
2.9
4.9 mg/L
Lactic Acid
8.0
16.6 mg/L
Ethanol
0.18
5.92
pH
Std. Dev.
Average
Concentration