Professor Hong Qian
Lewis Hall 319
office hours: Thursday: 10:30am-12:00pm
[Several chapters including Preface and Chapter 1 can be obtained free online] [Supplemental materials]
S. P. Ellner and J. Guckenheimer "Lab Manual: An Introduction to R for Dynamic Models in Biology" (Free Download 2011)
R Core Team "An Introduction to R" (Free Download 2013).
James D. Murray, "Mathematical Biology: I. An Introduction" (3rd edition, Springer, 2007).
Daniel A. Beard and Hong Qian, "Chemical Biophysics: Quantitative Analysis of Cellular Systems" (Cambridge Univ. Press, 2008).
Stormy Attaway, "Matlab: A Practical Introduction to Programming and Problem Solving" (Butterworth-Heinemann 2013). Available at University bookstore.
Two 6-10 mins presentations: Wed. February 26, 2014 in class (literature review and plan), Wed. March 12, 2014 in class (final presentation)
Final term papers are due on Wed. March 19.
Please read carefully Project and Presentation Guidelines, replacing MATLAB with R.
You can find a list of possible topics here or more advanced papers here.
Jan. 6 Notes
Jan. 8 Notes, Michalis-Menten Kinetics code
Jan. 13 Notes
Jan. 15 Notes
No class on Monday January 20, Martin Luther King Day.
Jan. 22 Notes
Jan 27, Leslie Matrix Population code
Feb. 3rd Notes, Lotka-Volterra Dynamics code, Plot 2d Vector Field code
Feb. 5 Notes, Morris-Lecar Dynamics code
Feb. 10 Notes
Feb. 12 Notes
No class on Monday February 17, Presidents Day.
Wed. February 26, in class presentation on literature review and plan.
Wed. March 12, in class final presentation.
Last day of class, Wednesday March 12, 2014.
Term paper due, Wednesday March 19, 2014 .
Homework #2: Due Jan 20, Solutions
Homework #3: Due Feb. 3 Solutions
Homework #4: Due Feb. 10 Solutions
Homework #5: Due ***Feb. 19*** Solutions
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