THIS SCHEDULE IS PRELIMINARY, AND SUBJECT TO CHANGE
| Wednesday, March 31 |
Gene descent in pedigrees Meiosis indicators and recombination. | |
| Friday, April 2 |
Genetic models and inference problems Models for Meiosis. | My book: Chapter 5. |
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| Wednesday, Apr 7 |
Tetrads, chromatids and Mather's formula. The chaismata avoidance function | Speed & Waterman Pp. 65-88: "What is a map function?". |
| Friday, Apr 9 |
Count-location meiosis models Renewal process chiasmata models | Lange Chapter 12: "Models for meiosis" |
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| Wednesday, Apr 14 |
Peeling: sums on graphs Baum algorithm for likelihoods Peeling the FGL graph |
Book 6.1, 6.2 Japan paper (2003) |
| Friday, Apr 16 |
Peeling on pedigree structures. 3.30: UW Science Forum | Book 6.3, 6.4 Garry Odell speaking on Gene networks at 3.30 p.m. |
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| Wednesday, Apr 21 | NO CLASS: I am in Minnesota | Plan your presentations |
| Friday, Apr 23 | NO CLASS: I am in Minnesota | Plan your presentations |
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| Wednesday, Apr 28 |
Peeling for likelihoods on pedigrees, ctd. Reverse peeling in an HMM | Book: 6.5, 6.6, 7.1 |
| Friday, Apr 30 |
Monte Carlo reverse peeling Pedigree risk probabilities etc. | Ting-Yuan : Browning (2000): interference |
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| Wednesday, May 5 |
Monte Carlo likelihood Sequential imputation | Book: 7.3, 7.6 |
| Friday, May 7 |
I-Yu Chiu : Elston,Sobel (1979) Ascertainment Saonli Basu: Kruglyak (1998) FTT for HMMs | |
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| Wednesday, May 12 |
MCMC on pedigrees MCMC estimates of lod-scores | Book: Ch 8, 9.1, 9.5 |
| Friday, May 14 |
Haoyuan Zhu : Excoffier, Slatkin (1995): EM for haplotypes Grace Ge : Stephens, PHASE; Bayes for haplotypes | |
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| Wednesday, May 19 |
Integrated proposals and joint updating Pseudo-Bayes estimation of lod scores | New stuff! George and Thompson, Statist. Sci. Nov 2003 |
| Friday, May 21 |
Arindam RoyChoudhury: Donnelly (1986): urn models and Ewens sampling
formula Paul Scheet: Pritchard et al.: Population structure | |
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| Wednesday, May 26 |
Metropolis-Hastings; sequential imputation, reweighting Examples of MCMC lod score estimation?? | |
| Friday, May 28 |
Caroline Cutting: Zhao,McPeek, Speed: Chromatid interference Bill Stewart: map estimation using MCMC | |
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| Wednesday, Jun 2 |
Examples of MCMC lod score estimation?? (ctd) MCMC for general meiosis models | Book: Chapter 11. |
| Friday, Jun 4 |
Garrett Hellenthal: Thomas/Gutin; advances MCMC on pedigrees Joe Rothstein: Sequential imputation on pedigrees | |
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