9.6.1 Autozyg computing requests

select [chromosome I] all markers [traits 1]

This statement selects all markers on the chromosome for the computation; if not all markers are to be used, use the next statement. If the trait for lm_auto is linked, `traits 1' is included in the statement. Omit `traits 1' for lm_pval.

select [chromosome I] markers J1 J2... [traits 1]

This alternate form of the `select markers' statement specifies a subset of the markers. As in the previous statement, specify a linked trait for lm_auto, but not for lm_pval here.

select unlinked trait K

Use this statement for lm_auto if the trait is unlinked. K is the trait number.