sample by scan
sample by step
select [chromosome] all markers
select [chromosome] markers
select inheritence
markerdrop
select partially phased data
select phased data
select state transition matrix
select trait
multivar
select unphased data
set batches MC variance estimation
set [chromosome] locus window
ibddrop
set [chromosome] marker allele frequencies
genedrop
set [chromosome] marker names
set [component] [scoreset] proband gametes
set [component] [scoreset] window patterns
set [component] proband gametes
set [scoreset] proband gametes
set base log likelihood
set breeding convergence
set burn-in iterations
set centimorgans per million base pairs
set chromosome length centimorgans
set debug level
set debug libname
set debug main
set dummy integers
set dummy reals
set eigenvalues
set EM convergence
lm_map
set females per generation
set genotyping error rate
set global MCMC
set ibd measures
lm_ibdtests
civil
set ibd permutations
set ibd tests
set inheritance tlocs
set kinship change rate
set L-sampler probability
set LD relaxation probability
set likelihood-ratio lambda-p model gridpoints
set likelihood-ratio measures
set likelihood-ratio tests
set limit for exact computation
set LRT statistics iterations
set map estimation with [no] mistyping
set marker data
set marker seeds
set maximum ibdgraphs per component
set MC iterations
set MCMC markers only
set million base pairs per centrimorgan
set normalized allele frequencies
set number of permutations
set offspring generations
set permutation seeds
set population kinship
set printlevel
set proband gametes all individual pairs
set pseudo-prior iterations
set pseudo-priors
set recombination frequencies
kin
set remating probability weight
set SA ascent iterations
set SA convergence
set SA curvature iterations
set SA gradient iterations
set sampler seeds
set sequential imputation proposals every iterations
set test position window
set tlocs allele frequencies
set trait data
set trait data discrete
set trait effects
set trait for tlocs joint genotype means
set trait seeds
set traits additive variance
set traits for tlocs genotype means
set traits for tlocs incomplete penetrances
set traits multiple tlocs
set traits residual variance
set traits tlocs
set transition matrix null fraction
simulate [chromosome] markers
simulate ibd realizations
simulate IBD realizations for trait
simulate markers
simulate tloc
simulate traits
start additive correlations
start additive covariances
start additive variances
start residual correlations
start residual covariances
start residual variances
start trait effect
start trait mean