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lm_markers
output
lm_markers
can be run with the same parameter file as lm_lods
.
Try:
lm_markers par15_lods |
Here is the interesting part of the output. For each test position, we have the LOD score and the standard deviation.
LodScore estimates by Rao-Blackwellized computation: Trait pos # position (Haldane cM) or marker male female LodScore StdErr 1 -115.129 -115.129 -0.0002 0.0030 2 -60.199 -60.199 0.0114 0.0089 3 -34.657 -34.657 0.0585 0.0210 4 -17.834 -17.834 0.1796 0.0456 5 -5.268 -5.268 0.3963 0.0716 marker-1 0.000 0.000 NA NA 6 5.108 5.108 0.4937 0.0701 7 12.771 12.771 0.4894 0.0595 8 20.433 20.433 0.5476 0.0573 marker-2 25.541 25.541 NA NA 9 30.650 30.650 0.5512 0.0552 10 38.312 38.312 0.4880 0.0538 11 45.974 45.974 0.4614 0.0682 marker-3 51.083 51.083 NA NA 12 56.191 56.191 0.4424 0.0772 13 63.853 63.853 0.4225 0.0736 14 71.516 71.516 0.4236 0.0801 marker-4 76.624 76.624 NA NA 15 81.732 81.732 0.3927 0.0826 16 89.394 89.394 0.3585 0.0791 17 97.057 97.057 0.3471 0.0888 marker-5 102.165 102.165 NA NA 18 107.433 107.433 0.2465 0.0868 19 119.999 119.999 0.0904 0.0486 20 136.822 136.822 0.0147 0.0208 21 162.364 162.364 -0.0091 0.0076 22 217.294 217.294 -0.0067 0.0023 |