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Concept Index: N -- U
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O
P
Q
S
T
U
Index Entry
Section
N
names of individuals
2.4 Pedigree file
O
observed individuals
2.4 Pedigree file
observed individuals
9.4.3
multivar
computational parameters
overview of
MORGAN
1.1 Overview of
MORGAN
P
parameter file
2.2 Parameter file.
parameter statements
2.2 Parameter file.
parameter statements in pedigree files
2.4 Pedigree file
pedcheck
examples
3.2 Running
pedcheck
examples
pedcheck
introduction
3.1 Introduction to
pedcheck
pedcheck
sample parameter file
3.3 Sample
pedcheck
parameter file
pedcheck
statements
3.4
pedcheck
statements
pedigree file
2.3 File identification statements
pedigree file
2.4 Pedigree file
pedigree file descriptions
2.5 Pedigree file description statements
pedigree options
3.4
pedcheck
statements
pedigree order
3.4
pedcheck
statements
pedigree record format
2.5 Pedigree file description statements
pedigree size
2.5 Pedigree file description statements
pedigree trait data order
2.5 Pedigree file description statements
pedigree validity
3.1 Introduction to
pedcheck
PolyEM
9. Polygenic Modeling of Quantitative Traits by EM Algorithm
PolyEM introduction
9.1 Introduction to PolyEM programs
PolyEM statements
9.4
multivar
statements
polygenic model
9. Polygenic Modeling of Quantitative Traits by EM Algorithm
posterior
ibd
probabilities
7. Estimating Posterior
ibd
Probabilities by MCMC
proband gametes
6.2 Sample
ibddrop
parameter file
proband gametes
6.4
ibddrop
statements
proband gametes
7.2 Sample
lm_auto
parameter file
Q
quantitative traits
9. Polygenic Modeling of Quantitative Traits by EM Algorithm
S
seed file
2.3 File identification statements
seeds for data simulation
5.1 Introduction to
genedrop
.
seeds for data simulation
5.3 Sample
genedrop
output file
seeds for data simulation
5.4.4
genedrop
computational parameters
seeds for data simulation
5.4.6
genedrop
output seed file options
seeds for sampler
6.2 Sample
ibddrop
parameter file
seeds for sampler
6.4
ibddrop
statements
sequential imputation
7.6.5 Autozyg MCMC parameters and options
sequential imputation
8.5 Sample
lm_bayes
parameter file
sequential imputation proposals
8.8.5 Location LOD scores MCMC parameters and options
simulating marker data
5. Simulating Data on Pedigrees
simulating trait data
5. Simulating Data on Pedigrees
T
trait data
7.2 Sample
lm_auto
parameter file
trait data
7.6.4 Autozyg computational parameters
trait test positions
8.8.2 Location LOD scores mapping model parameters
Tutorial for LOD score examples with
`ped52.ped'
1.4 Additional LOD score examples
U
unibig
9.1 Introduction to PolyEM programs
univar
9.1 Introduction to PolyEM programs
unobserved individuals
2.4 Pedigree file
unobserved individuals
5.1 Introduction to
genedrop
.
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