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kin
output Run the example with the command:
kin par15_kin |
Here is the interesting part of the output from kin
. It is
self-explanatory. When the recombination frequency is 0.0, the two-locus
inbreeding coefficient is the same as the one-locus inbreeding
coefficient. When the recombination frequency is 0.5, the two loci are
independent and the two-locus inbreeding coefficient is the squared
one-locus inbreeding coefficient. Check the output to see if this is the
indeed the case.
Kinship coefficients: 531 431 .32031 431 432 .10938 Inbreeding coefficients: 431 .06250 531 .10938 2-locus inbreeding coefficients: (g4link is probability of IBD at both of 2 linked loci) proband recomb g4link freq prob 531 .000 .10938 .010 .10234 .040 .08386 .050 .07849 .100 .05660 .180 .03455 .300 .01910 .500 .01196 |