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3.2 Running pedcheck examples

Here are some pedcheck examples for you to run:

pedcheck pedchk_par

runs on input pedigree file `pedchk_ped'. The pedigree is correct, but has no gender specified and is not in chronological order. The output pedigree file `pedchk_out1' has gender assigned and has the members reordered. Note that you will get an error message if `pedchk_out1' already exists. Delete it and try again or use another output file name.

pedcheck pedchk_par2

runs on input pedigree file `pedchk_imp'. The pedigree has an individual who is his own ancestor.

pedcheck emptypar ped pedchk_sex

runs with an empty parameter file, with input pedigree file `pedchk_sex' specified on the command line. What does the output say is wrong with this pedigree?

pedcheck emptypar ped pedchk_dup

runs with an empty parameter file, with input pedigree file `pedchk_dup' specified on the command line. What does the output say is wrong with this pedigree?

pedcheck apob_chk_par

runs with input pedigree file `ped_apob'. This is a real data set from the Werner's syndrome study.



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