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6.4 ibddrop statements

set [component M] proband gametes N1 K1 N2 K2...

In this statement, one or more scoring sets are given for each pedigree component. Pairs of names and meiosis indicators are given, with `0' indicating maternal inheritance, `1' indicating paternal inheritance.

The number of proband gametes in a set is limited, in the current program version, to 10.

set [chromosome I] locus window K

This statement gives the window size (number of loci) for which the multilocus ibd probabilities are scored. If no size is given, each locus is scored separately.

set sampler seeds H1 H2

This statement initializes a pair of seeds for the random number generator. The seeds must be positive and no greater than `0xFFFFFFFF', with the first seed (congruential seed) odd, and the second seed (Tausworthe seed) nonzero. If no seeds are specified, default seeds are used.

set MC iterations I

Required. This statement specifies the total number of Monte Carlo iterations.



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