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8.4 Sample lm_markers output

lm_markers can be run with the same parameter file as lm_lods. Try:

 
lm_markers par15_lods

Here is the interesting part of the output. For each test position, we have the LOD score and the standard deviation.

 
LodScore estimates by Rao-Blackwellized computation:
 
Trait pos #     position (Haldane cM)
  or marker        male     female       LodScore    StdErr
 
          1    -115.129   -115.129        -0.0002    0.0030
          2     -60.199    -60.199         0.0114    0.0089
          3     -34.657    -34.657         0.0585    0.0210
          4     -17.834    -17.834         0.1796    0.0456
          5      -5.268     -5.268         0.3963    0.0716
   marker-1       0.000      0.000             NA        NA
          6       5.108      5.108         0.4937    0.0701
          7      12.771     12.771         0.4894    0.0595
          8      20.433     20.433         0.5476    0.0573
   marker-2      25.541     25.541             NA        NA
          9      30.650     30.650         0.5512    0.0552
         10      38.312     38.312         0.4880    0.0538
         11      45.974     45.974         0.4614    0.0682
   marker-3      51.083     51.083             NA        NA
         12      56.191     56.191         0.4424    0.0772
         13      63.853     63.853         0.4225    0.0736
         14      71.516     71.516         0.4236    0.0801
   marker-4      76.624     76.624             NA        NA
         15      81.732     81.732         0.3927    0.0826
         16      89.394     89.394         0.3585    0.0791
         17      97.057     97.057         0.3471    0.0888
   marker-5     102.165    102.165             NA        NA
         18     107.433    107.433         0.2465    0.0868
         19     119.999    119.999         0.0904    0.0486
         20     136.822    136.822         0.0147    0.0208
         21     162.364    162.364        -0.0091    0.0076
         22     217.294    217.294        -0.0067    0.0023



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