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4.3 Sample kin output

Run the example with the command:

 
kin par15_kin

Here is the interesting part of the output from kin. It is self-explanatory. When the recombination frequency is 0.0, the two-locus inbreeding coefficient is the same as the one-locus inbreeding coefficient. When the recombination frequency is 0.5, the two loci are independent and the two-locus inbreeding coefficient is the squared one-locus inbreeding coefficient. Check the output to see if this is the indeed the case.

 
 Kinship coefficients:

 531  431   .32031
 431  432   .10938

 Inbreeding coefficients:

 431   .06250
 531   .10938

 2-locus inbreeding coefficients:
 (g4link is probability of IBD at both of 2 linked loci)

 proband  recomb   g4link
            freq     prob
     531    .000   .10938
            .010   .10234
            .040   .08386
            .050   .07849
            .100   .05660
            .180   .03455
            .300   .01910
            .500   .01196



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