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Concept Index: N -- U

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Index Entry Section

N
names of individuals2.4 Pedigree file

O
observed individuals2.4 Pedigree file
observed individuals9.4.3 multivar computational parameters
overview of MORGAN1.1 Overview of MORGAN

P
parameter file2.2 Parameter file.
parameter statements2.2 Parameter file.
parameter statements in pedigree files2.4 Pedigree file
pedcheck examples3.2 Running pedcheck examples
pedcheck introduction3.1 Introduction to pedcheck
pedcheck sample parameter file3.3 Sample pedcheck parameter file
pedcheck statements3.4 pedcheck statements
pedigree file2.3 File identification statements
pedigree file2.4 Pedigree file
pedigree file descriptions2.5 Pedigree file description statements
pedigree options3.4 pedcheck statements
pedigree order3.4 pedcheck statements
pedigree record format2.5 Pedigree file description statements
pedigree size2.5 Pedigree file description statements
pedigree trait data order2.5 Pedigree file description statements
pedigree validity3.1 Introduction to pedcheck
PolyEM9. Polygenic Modeling of Quantitative Traits by EM Algorithm
PolyEM introduction9.1 Introduction to PolyEM programs
PolyEM statements9.4 multivar statements
polygenic model9. Polygenic Modeling of Quantitative Traits by EM Algorithm
posterior ibd probabilities7. Estimating Posterior ibd Probabilities by MCMC
proband gametes6.2 Sample ibddrop parameter file
proband gametes6.4 ibddrop statements
proband gametes7.2 Sample lm_auto parameter file

Q
quantitative traits9. Polygenic Modeling of Quantitative Traits by EM Algorithm

S
seed file2.3 File identification statements
seeds for data simulation5.1 Introduction to genedrop.
seeds for data simulation5.3 Sample genedrop output file
seeds for data simulation5.4.4 genedrop computational parameters
seeds for data simulation5.4.6 genedrop output seed file options
seeds for sampler6.2 Sample ibddrop parameter file
seeds for sampler6.4 ibddrop statements
sequential imputation7.6.5 Autozyg MCMC parameters and options
sequential imputation8.5 Sample lm_bayes parameter file
sequential imputation proposals8.8.5 Location LOD scores MCMC parameters and options
simulating marker data5. Simulating Data on Pedigrees
simulating trait data5. Simulating Data on Pedigrees

T
trait data7.2 Sample lm_auto parameter file
trait data7.6.4 Autozyg computational parameters
trait test positions8.8.2 Location LOD scores mapping model parameters
Tutorial for LOD score examples with `ped52.ped'1.4 Additional LOD score examples

U
unibig9.1 Introduction to PolyEM programs
univar9.1 Introduction to PolyEM programs
unobserved individuals2.4 Pedigree file
unobserved individuals5.1 Introduction to genedrop.

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