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7.4 Sample lm_pval parameter file

The parameter file looks a lot like the file for lm_auto.

 
select all markers
select unlinked null locus

For lm_pval we select markers, but no trait. lm_pval uses a no-phenotype unlinked null locus.

 
set affected individuals 531 331 333

This statement is new; we specify three members of the pedigree, 532, 331 and 333, as affected with the disease.



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