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MORGAN Tutorial

This is a tutorial for the MORGAN (Monte Carlo Genetic Analysis) package, focusing on how to use the provided programs.

The current version of this document is written for MORGAN Version 2.6.

1. Get Started  
2. Common Features and File Formats  
3. Checking Pedigree Validity  
4. Computing Kinship and One- or Two-Locus Inbreeding Coefficients  
5. Simulating Data on Pedigrees  
6. Estimating a priori ibd Probabilities by Monte Carlo  
7. Estimating Posterior ibd Probabilities by MCMC  
8. Estimating Location LOD Scores by MCMC  
9. Polygenic Modeling of Quantitative Traits by EM Algorithm  
Concept Index  
Statement Index  



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