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1.4 Additional LOD score examples

In addition to this tutorial document, a brief introduction to MORGAN and in particular to MCMC LOD score estimation is provided in the ped52_lodscores PDF file. This file is also included with the examples.

This document was written for a 90-minute computing session for the module "Advanced pedigree analysis using MCMC" of the 2004 NCSU Summer Institute in Statistical Genetics. The document introduces MORGAN parameter statements through use of the three tutorial examples make pedchk1.out (section 3.1), make genedrop.out (section 3.2), and make lm_auto.out (section 3.3). It then provides seven examples of LOD score estimation, using three alternative LOD score estimation programs, and three different traits simulated on a 52-member pedigree. see Comparison of LOD scores methods.



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