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PolymorphicProb

PolymorphicProb[tree, theta, epsilon, modelid]
returns the probabllity that the number of minor alleles ≥ 2 results for mutation and typing error, given the tree.
PolymorphicProb[trees, theta, epsilon, modelid]
returns a list of probabllities that the number of minor alleles ≥ 2 results for mutation and typing error, given a list of trees.