mSMCTransition[tree] randomizes a mSMC transition {e0,t1,e1} on tree, where the recombation occurs on the branch e0, and the emerging branch coalesces on the branch e1 at time t1. |
mSMCTransition[tree, els] randomizes a mSMC transiton {e0,t1,e1} on tree, under the constraint that the branch on which the recombation occurs is randomly chosen among the branch list els,weighted by the branch length. |
mSMCTransition[tree, e0] randomizes a mSMC transiton {e0,t1,e1} on tree, under the constraint that the branch on which the recombation occurson the branch e0. |
mSMCTransition[tree, {e0, -1, e1}] randomizes a mSMC transiton {e0,t1,e1} on tree, under the constraint that the recombation occurs on the branch e0, and the emerging branch coalesces on the branch e1. |