Systems biology

Systems biology

Systems biology of microbial cultures & metagenomes

Genomics & transcriptomics of microbes involved in methane metabolism

  • Genome sequencing and resequencing
  • Metabolic reconstruction
  • Transcriptomics

Collaborators: Lidstrom Lab including Mary Lidstrom, Mila Chistoserdova, Marina Kalyuzhnaya

 

Environmental metagenomics in biogeochemical cycling

  • Probing the role of methane consumers in the natural environment
  • Community dynamics in fresh water sediments
  • Nitrogen metabolism

Collaborators: Lidstrom Lab including Mary Lidstrom, Mila Chistoserdova, Marina Kalyuzhnaya

 

Oral microbial communities and their role in disease

  • Proteomics of model oral microbial communities
  • Transcriptomics of model oral microbial communities
  • Methods development for proteomics of microbial communities

Collaborators: Hackett Lab & Center for Microbial Proteomics