
Systems biology
Systems biology of microbial cultures & metagenomes
Genomics & transcriptomics of microbes involved in methane metabolism
- Genome sequencing and resequencing
- Metabolic reconstruction
- Transcriptomics
Collaborators: Lidstrom Lab including Mary Lidstrom, Mila Chistoserdova, Marina Kalyuzhnaya
Environmental metagenomics in biogeochemical cycling
- Probing the role of methane consumers in the natural environment
- Community dynamics in fresh water sediments
- Nitrogen metabolism
Collaborators: Lidstrom Lab including Mary Lidstrom, Mila Chistoserdova, Marina Kalyuzhnaya
Oral microbial communities and their role in disease
- Proteomics of model oral microbial communities
- Transcriptomics of model oral microbial communities
- Methods development for proteomics of microbial communities
Collaborators: Hackett Lab & Center for Microbial Proteomics