E. coli RESOURCES |
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Description
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| A good site for rapid look-up of E. coli genes | |
| Excellent site for complete, up-to-date information on E. coli genes. Includes links to PDB, SWISS-PROT and ASKA/KEIO deletion collections | |
| Japanese genome analysis project on E. coli W3110. Includes ASKA/KEIO collections, microarray, 2D proteome and expression data. | |
| Homepage of the Blattner's lab. Includes clone collection in Gateway vectors, single gene deletion collection, microarray data, phenotypic analysis data, BLAST and annotation tools | |
| Bioinformatics database describing the genome, regulatory and biochemical machinery of E. coli | |
| Pathway and gemome databases for many organisms | |
| Information on all the publicly available, complete prokaryotic genomes | |
| E. coli genome and proteome database | |
| Database of E. coli regulons and transcriptional regulatory elements | |
| List of essential E. coli genes from the Blattner's lab as of March 2004 | |
| Proteomics Resources |
Description
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| Protein sequence database at ExPASy | |
| Protein sequence database at Entrez | |
| Protein structure database at Entrez | |
| Protein structure database at RCSB-PDB | |
| Automated protein homology modeling at ExPASy | |
| Clickable 2D-PAGE gels including E. coli at ExPASy | |
| N-terminal protein sequence from 2D-gels of E. coli grown under a variety of conditions at the Church laboratory | |
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Description
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| Collection of single gene knock out mutants | |
| Archive clones containing all predicted E. coli ORFs as His-tagged proteins with or without a C-terminus GFP fusion | |
| Searchable Kohara collection | |
| Strains and mutants from the CGSC at Yale | |
| Strains and mutants from the American Type Culture Collection | |
| Strains and plasmids from the Shigen laboratory collection | |
| Strains and plasmids from the Belgian Coordinated Collection of Microorganisms | |
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Description
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| Multiple sequence alignments for DNA and proteins at EMBL | |
| Sequence similarity searches for DNA and proteins at EMBL | |
| Genomewide similarity searches at EMBL | |
| Many useful proteomics tools at ExPASy including pI, MW, aa information, post-translational modifications... |